Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03582 and RBAM_022340

See Amino acid alignment / Visit BSNT_03582 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:50
# Commandline: needle
#    -asequence dna-align/BSNT_03582___lpdV.1.9828.seq
#    -bsequence dna-align/RBAM_022340___lpdV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03582___lpdV-RBAM_022340___lpdV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03582___lpdV-RBAM_022340___lpdV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03582___lpdV
# 2: RBAM_022340___lpdV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1457
# Identity:    1087/1457 (74.6%)
# Similarity:  1087/1457 (74.6%)
# Gaps:          67/1457 ( 4.6%)
# Score: 3999.5
# 
#
#=======================================

BSNT_03582___      1 ATGGCAACTGAGTATGACGTAGTCATTCTGGGCGGCGGTACCGGCGGTTA     50
                     |||||.|||||||||||.||.|||||||||||||||||.||.||||||||
RBAM_022340__      1 ATGGCGACTGAGTATGATGTGGTCATTCTGGGCGGCGGCACGGGCGGTTA     50

BSNT_03582___     51 TGTTGCGGCCATCAGAGCCGCTCAGCTCGGCTTAAAAACAGCCGTTGTGG    100
                     |||.||.|||||||||||.||.|||||||||||||||||.||||||||.|
RBAM_022340__     51 TGTAGCCGCCATCAGAGCGGCCCAGCTCGGCTTAAAAACGGCCGTTGTAG    100

BSNT_03582___    101 AAAAGGAAAAACTCGGAGGAACATGTCTGCATAAAGGCTGTATCCCGAGT    150
                     ||||.|||||.||.||.||||||||.|||||||||||.||||||||||||
RBAM_022340__    101 AAAAAGAAAAGCTTGGCGGAACATGCCTGCATAAAGGATGTATCCCGAGT    150

BSNT_03582___    151 AAAGCGCTGCTTAGAAGCGCAGAGGTATACCGGACAGCTCGTGAAGCCGA    200
                     |||||||||.|.||||||||.||.||.|||||.||.||....|||||.| 
RBAM_022340__    151 AAAGCGCTGTTAAGAAGCGCGGAAGTGTACCGAACCGCAAAGGAAGCGG-    199

BSNT_03582___    201 TCA--ATTCGGGGTGGAAACGGCTGGCGTGTCCCTCAACTTTGAAAAAGT    248
                      ||  ||||||..|.|||||||..||.||.||||||..||||||.|..||
RBAM_022340__    200 -CAGCATTCGGCATTGAAACGGAAGGTGTCTCCCTCCGCTTTGACAGCGT    248

BSNT_03582___    249 GCAGCAGCGTAAGCAAGCCGTTGTTGATAAGCTTGCAGCGGGTGTAAATC    298
                     |||..|.||.|||||.|...|.|||||...|||.||.|..|||||....|
RBAM_022340__    249 GCAAAAACGAAAGCAGGGAATCGTTGACCGGCTGGCCGGCGGTGTCGCCC    298

BSNT_03582___    299 ATTTAATGAAAAAAGGAAAAATTGACGTGTACACCGGATATGGACGTATC    348
                     |.||.||||||||.||.||.|||||.||.|.||.|||.||.||||||||.
RBAM_022340__    299 ACTTGATGAAAAAGGGGAAGATTGATGTATTCAACGGGTACGGACGTATG    348

BSNT_03582___    349 CTTGGACCGTCAATCTTCTCTCCGCTGCCGGGAACAATTTCTGTTGA---    395
                     ||.||.||.||.||||||||.||.||.||.||.||..||||.||.||   
RBAM_022340__    349 CTCGGCCCTTCCATCTTCTCACCTCTTCCCGGTACGGTTTCAGTCGAATA    398

BSNT_03582___    396 -GCGGGGAAATGGCGAAGAAAATGACATGCTGATACCGAAACAAGTGATC    444
                      ||    ||||||.||||||||.|||||||||||||||||||||.||||.
RBAM_022340__    399 CGC----AAATGGTGAAGAAAACGACATGCTGATACCGAAACAATTGATT    444

BSNT_03582___    445 ATTGCAACAGGATCAAGACCGAGAATGCTTCCGGGTCTTGAAGCGGACGG    494
                     ||.|||||.||.|||||.||||.||||||.||||||.|.|||||.|||||
RBAM_022340__    445 ATCGCAACCGGTTCAAGGCCGAAAATGCTGCCGGGTTTAGAAGCAGACGG    494

BSNT_03582___    495 TAAGTCTGTACTGACTTCAGATGAGGCGCTCCAAATGGAGGAGCTGCCAC    544
                     ||..|.|.|.|||||.||||||||.|||.|..|..|.||....|||||.|
RBAM_022340__    495 TACATATATTCTGACATCAGATGAAGCGTTAGAGCTTGAACGTCTGCCCC    544

BSNT_03582___    545 AATCAATCATCATTGTCGGCGGAGGGGTTATCGGTATCGAATGGGCGTCT    594
                     ||||.||.||.||.||||||||.||.||.|||||.||.||||||||.||.
RBAM_022340__    545 AATCCATGATGATCGTCGGCGGCGGTGTCATCGGAATTGAATGGGCATCC    594

BSNT_03582___    595 ATGCTTCATGATTTTGGTGTGAAGGTAACGGTTATTGAATACGCGGATCG    644
                     |||||..|.|||||.||.||.||..|.||.||.||||||||.||.||.||
RBAM_022340__    595 ATGCTGAACGATTTCGGCGTCAATATCACTGTGATTGAATATGCAGACCG    644

BSNT_03582___    645 CATATTGCCGACTGAAGATCTAGAGATTTCAAAAGAAATGGAAAGTCTTC    694
                     |||.||||||||.|||||.|..||.|||||||..||.|||||||..| |.
RBAM_022340__    645 CATTTTGCCGACGGAAGACCGTGATATTTCAAGCGAGATGGAAAAAC-TG    693

BSNT_03582___    695 TTAA-GAAAAAAGGCATCCAGTTCATAACAGGGGCAAAAGTGCTGCCTGA    743
                     |||| |||||||||.||..||.||.|.||.||.||.||||||||.||.||
RBAM_022340__    694 TTAACGAAAAAAGGAATTAAGATCGTGACGGGTGCGAAAGTGCTTCCGGA    743

BSNT_03582___    744 CACAATGACAAAAAC-------------AT--CAGATGATATCAGCATAC    778
                     .|||.||..||||.|             ||  |.|.|||.|  ||.||  
RBAM_022340__    744 TACATTGGAAAAAGCGGACGGCGTTTCAATTGCCGCTGAAA--AGAAT--    789

BSNT_03582___    779 AAGCGGAAAAAGACGGAGAAACCGTTACCTACTCTGCTGAGAAAATGCTA    828
                         |||||||    .||||||  .||.| ||   ||.||..|||||||.
RBAM_022340__    790 ----GGAAAAA----AAGAAAC--GTATC-AC---GCGGAACAAATGCTT    825

BSNT_03582___    829 GTTTCCATCGGCAGACAGGCAAATATCGAAGGCATTGGCCTAGAGAACAC    878
                     ||||||||||||.|.|||.|.||.||.|||||.||.||.||.||.|||||
RBAM_022340__    826 GTTTCCATCGGCCGCCAGCCGAACATTGAAGGGATCGGGCTTGAAAACAC    875

BSNT_03582___    879 CGATATTGTTACTGAAAATGGCATGATTTCA--GTCAATGAAAGCTGCCA    926
                     .|||||||...|.|||||.||  |..|.|||  ||.||.|||..|.|.||
RBAM_022340__    876 GGATATTGAAGCGGAAAACGG--TTCTATCATCGTGAACGAAGCCGGGCA    923

BSNT_03582___    927 GACGAAGGAATCTCATATTTATGCAATTGGAGACGTAATCGGTGGTCTGC    976
                     ||||||||||||.||.||||||||.||.||.||.||..||||.||.||||
RBAM_022340__    924 GACGAAGGAATCGCACATTTATGCGATCGGTGATGTTGTCGGCGGGCTGC    973

BSNT_03582___    977 AGTTAGCTCACGTTGCTTCACATGAGGGAATTATTGCTGTTGAGCATTTT   1026
                     ||.|.||.||.||.||.||.|.||||||.||.|||||.|||||||||.|.
RBAM_022340__    974 AGCTTGCGCATGTGGCCTCCCGTGAGGGCATCATTGCCGTTGAGCATATG   1023

BSNT_03582___   1027 GCAGGTCTCAATCCGCATCCGCTTGAT-CCGACGCTTGTGCCGAAGTGCA   1075
                     ||.|||||.||||||..|||||||||| ||| |.|||||||||||.||.|
RBAM_022340__   1024 GCGGGTCTTAATCCGGCTCCGCTTGATGCCG-CTCTTGTGCCGAAATGTA   1072

BSNT_03582___   1076 TTTACTCAAGCCCTGAAGCTGCCAGTGTTGGCTTAACCGAAGACGAAGC-   1124
                     ||||.||||..||.|||||.||.||.||.||..|.||.|||||.||||| 
RBAM_022340__   1073 TTTATTCAAATCCGGAAGCGGCGAGCGTCGGTCTGACAGAAGAGGAAGCT   1122

BSNT_03582___   1125 ------AAAGGCGAACGGGCATAATGTCAAAATCGGCAAGTTCCCATTTA   1168
                           |||       ||||||.|..|.||.|||||.|||||.||.||.|
RBAM_022340__   1123 CTTCGAAAA-------GGGCATGAACTGAAGATCGGGAAGTTTCCGTTCA   1165

BSNT_03582___   1169 TGGCGATTGGAAAAGCGCTTGTATACGGTGAAAGCGACGGTTTTGTCAAA   1218
                     ||||.||.|||||.||.|||||||||||.||.|||||.||.|||||||||
RBAM_022340__   1166 TGGCAATCGGAAAGGCTCTTGTATACGGAGATAGCGATGGCTTTGTCAAA   1215

BSNT_03582___   1219 ATCGTGGCGGACCGAGATACAGATGATATTCTCGGCGTTCATATGATCGG   1268
                     |||||.||.||.||..|||||||||||||||||||.||.|||||||||||
RBAM_022340__   1216 ATCGTCGCCGATCGGAATACAGATGATATTCTCGGTGTCCATATGATCGG   1265

BSNT_03582___   1269 CCCGCATGTCACCGACATGATTTCTGAAGCGGGTCTTGCCAAAGTGCTGG   1318
                     .|||||.||||||||.|||||.|||||||||||.||||||||.|||||.|
RBAM_022340__   1266 TCCGCACGTCACCGATATGATCTCTGAAGCGGGGCTTGCCAAGGTGCTCG   1315

BSNT_03582___   1319 ACGCAACGCCGTGGGAGATCGGGCAAACGATTCACCCGCATCCAACGCTT   1368
                     ||||.|||||.|||||.|||||.||..|.||.||.||||||||..||||.
RBAM_022340__   1316 ACGCGACGCCTTGGGAAATCGGCCAGTCCATACATCCGCATCCGTCGCTG   1365

BSNT_03582___   1369 TCTGAAGCAATTGGGGAAGCAGCGCTTGCCGCAGATGGCAAAGCCATTCA   1418
                     ||.|||||.|||||.|||||.|||.|.||||||||.||.||.||.|||||
RBAM_022340__   1366 TCAGAAGCGATTGGAGAAGCTGCGTTAGCCGCAGACGGAAACGCGATTCA   1415

BSNT_03582___   1419 TTTTTAA   1425
                     |||||||
RBAM_022340__   1416 TTTTTAA   1422


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