Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03585 and RBAM_022370

See Amino acid alignment / Visit BSNT_03585 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:51
# Commandline: needle
#    -asequence dna-align/BSNT_03585___ptb.1.9828.seq
#    -bsequence dna-align/RBAM_022370___ptb.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03585___ptb-RBAM_022370___ptb.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03585___ptb-RBAM_022370___ptb.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03585___ptb
# 2: RBAM_022370___ptb
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 927
# Identity:     667/927 (72.0%)
# Similarity:   667/927 (72.0%)
# Gaps:          60/927 ( 6.5%)
# Score: 2324.5
# 
#
#=======================================

BSNT_03585___      1 ATGAAGCTGAAAGATTTAATCGGCAAAGCGTCGATGCACAAAAA---TAA     47
                     ||||||||||.|||..||.|.|..|||||  ||..||| |||||   .||
RBAM_022370__      1 ATGAAGCTGAGAGACCTAGTTGAAAAAGC--CGCGGCA-AAAAACGCAAA     47

BSNT_03585___     48 GACCATTGCGGTTGCTCATGCTGAGGATGAGGAAGTGATCCGGGCTGTAA     97
                     .||||||||.||.||.||.||.|..|||.|.||||||||||.|||.||.|
RBAM_022370__     48 AACCATTGCAGTGGCCCACGCAGCAGATAAAGAAGTGATCCAGGCCGTCA     97

BSNT_03585___     98 AGCTGGCTGCCGAGCACCTATCCGCCCGTTTCTTGTTAACGGGCGACAGC    147
                     |..||||.||.||.|||.|.||.||.||.||.||..|.|||||.||||||
RBAM_022370__     98 AAATGGCGGCAGAACACTTGTCGGCACGATTTTTACTGACGGGTGACAGC    147

BSNT_03585___    148 ACAAAACTGAACGAGCT-----GACATCATCCATGCAAGGGCATCAAGTG    192
                     ..|||.|||||.|||||     .|.||.|.||   .|||   .|||| ||
RBAM_022370__    148 GGAAAGCTGAAAGAGCTTCTGGCAAATGAGCC---GAAG---TTCAA-TG    190

BSNT_03585___    193 --GAAATCGTCCATGCCGATACTCCTGAGGAAT---CGGCAAAATTAGCG    237
                       ||||||.||||.||||||.|.||.||.||||   |||||||   |||.
RBAM_022370__    191 CTGAAATCATCCACGCCGATTCACCCGAAGAATCTGCGGCAAA---AGCA    237

BSNT_03585___    238 GTTCGTGCTGTGCATCATAAAACA-GCGGACGTTTTAATGAAAGGCAATG    286
                     ||.||.||.||||.|.| |.||.| ||||||||||||||||||||.|||.
RBAM_022370__    238 GTGCGCGCAGTGCGTGA-ACAAGAGGCGGACGTTTTAATGAAAGGGAATC    286

BSNT_03585___    287 TGCCGA--------CTTCTGTTTTGCTTAAAGCGGTATTGAACAGACAGG    328
                     |.||||        ||||||        |||.||||.||.|||.|.||.|
RBAM_022370__    287 TCCCGAGCTCAACTCTTCTG--------AAATCGGTTTTAAACCGCCATG    328

BSNT_03585___    329 AGGGGCTTCGGTCATCAA--GTGTCCTTTCCCACGTGGCTGTCTTTGATA    376
                     |.||||||||.|||..||  ||||  |.||.||.||.||.||.|||||..
RBAM_022370__    329 AAGGGCTTCGTTCAAAAATGGTGT--TATCACATGTAGCCGTTTTTGAGG    376

BSNT_03585___    377 TACCGGATTTTGACCGGCTGATGTTTGTGACAGATTCGGCAATGAATATT    426
                     |.|||||.|.||||||||||||||.||||||.|||||.||..||||.|||
RBAM_022370__    377 TGCCGGACTATGACCGGCTGATGTATGTGACTGATTCAGCGCTGAACATT    426

BSNT_03585___    427 GCTCCTTCGCTGGAAGAGCTTCGGCAGATTTTGCAAAATGCCGTTCATGT    476
                     ||.||.||.||.||||||||..||||.|||.||||||||||.|||||.||
RBAM_022370__    427 GCCCCGTCTCTTGAAGAGCTCGGGCATATTCTGCAAAATGCGGTTCACGT    476

BSNT_03585___    477 GGCCCATGCAGTGGGGAACAATATGCCAAAAGCAGCTGCTCTGGCAGCGG    526
                     .||.|||.||||.||||||..||||||.|||||.||.|..||.||.||..
RBAM_022370__    477 TGCACATTCAGTAGGGAACCCTATGCCGAAAGCCGCAGTCCTTGCCGCTA    526

BSNT_03585___    527 TCGAAACGGTGAACCCTAAAATGGAAGCGACCGTGAATGCAGCTGCTCTA    576
                     |.||||||||.||.||.||||||||.||||||.||||.||.|||||..|.
RBAM_022370__    527 TTGAAACGGTTAATCCGAAAATGGAGGCGACCCTGAACGCGGCTGCGATC    576

BSNT_03585___    577 GCTCAAATGTACAAAAGGGGCCAGATCAAAGGCTGCATTGTTGATGGACC    626
                     |..||.||||.|||.||.||.|||||.|..||||||||||..||.|||||
RBAM_022370__    577 GTCCAGATGTGCAATAGAGGACAGATTACCGGCTGCATTGCGGACGGACC    626

BSNT_03585___    627 ACTTGCTTTGGATAACGCAGTTTCACAAATTGCCGCGGCCCAGAAAAAA-    675
                     .||||||||||||||.||.||.||.|||   ||.||.||.|.|.||||| 
RBAM_022370__    627 GCTTGCTTTGGATAATGCCGTATCCCAA---GCGGCTGCGCTGCAAAAAG    673

BSNT_03585___    676 --ATTTCGGGAGACGTAGCGGGCAACGCAGATATCCTTCTCGTCCCAACA    723
                       |||||.|||..||||||||||.|.||.|||||.||..|.||.||..||
RBAM_022370__    674 GGATTTCCGGAAGCGTAGCGGGCCAGGCGGATATTCTCTTGGTTCCTTCA    723

BSNT_03585___    724 ATTGAGGCCGGCAATATTTTATATAAATCTCTGATTTATTTTGCCAAGGC    773
                     ||.||||||||.|||||..|.|||||.||..|||||||||||||.||.||
RBAM_022370__    724 ATCGAGGCCGGAAATATGCTTTATAAGTCAATGATTTATTTTGCGAAAGC    773

BSNT_03585___    774 CAGCGTGGCGGCTGTCATTACAGGAGCCAAAGCACCGATTGCCTTAACAA    823
                     .|..||.||.||.|||||..|.||.||.|||||.|||||.||.|||||.|
RBAM_022370__    774 AAATGTTGCTGCCGTCATCGCCGGTGCAAAAGCGCCGATCGCATTAACGA    823

BSNT_03585___    824 GCAGAGCGGACTCTGCTGAAAATAAACTGTATTCCATTGCGCTGGCAATA    873
                     ||||||||||..|.||.|||||||||||||||||.||||||||.||.||.
RBAM_022370__    824 GCAGAGCGGATACCGCAGAAAATAAACTGTATTCAATTGCGCTTGCGATT    873

BSNT_03585___    874 TGCGCATCTGAAGAATACACACATTAG    900
                     ||||||||..||||      |||.|||
RBAM_022370__    874 TGCGCATCACAAGA------ACAGTAG    894


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