Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03601 and RBAM_022470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:52
# Commandline: needle
# -asequence dna-align/BSNT_03601___yqiI.1.9828.seq
# -bsequence dna-align/RBAM_022470___yqiI.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03601___yqiI-RBAM_022470___yqiI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03601___yqiI-RBAM_022470___yqiI.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03601___yqiI
# 2: RBAM_022470___yqiI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 652
# Identity: 425/652 (65.2%)
# Similarity: 425/652 (65.2%)
# Gaps: 77/652 (11.8%)
# Score: 1295.0
#
#
#=======================================
BSNT_03601___ 1 ---------TTG-------GCGCTG-TGCGGATTGGCTT---TGACGCTC 30
.|| |||||| ||| ||| ||.|||||
RBAM_022470__ 1 GTGGGTTTACTGACAAAAAGCGCTGCTGC-------CTTCGGTGCCGCTC 43
BSNT_03601___ 31 -----------GCGCCTTGTGCACAGGCAGCAGAGCCGATAGAAGGGAAA 69
|||||.|.|||..|.|||||.||.||..|..||||||||
RBAM_022470__ 44 TTCTTCTGCTTGCGCCGTCTGCTTATGCAGCTGAACCTTTGCAAGGGAAA 93
BSNT_03601___ 70 ACAGTGTATATTGATGCCGGACACGGCGGTGAAGATAGTGGAGCGGTCGG 119
||..|.|||||.|||||||||||.|||||.|||||.||.||.||...|||
RBAM_022470__ 94 ACCATTTATATCGATGCCGGACATGGCGGAGAAGACAGCGGGGCCAGCGG 143
BSNT_03601___ 120 AAACGGGCTCTTTGAAAAGGATATTAATTTGGCTGTCTCAGAGCATGTGA 169
|||.||.||..||||.||..|.||.|||||.||.||.|||.|..|.||||
RBAM_022470__ 144 AAATGGACTGCTTGAGAAAAACATCAATTTAGCGGTGTCAAACAAGGTGA 193
BSNT_03601___ 170 CAGACAAACTAAAAGAG---GAGGGAGCCAATCCTGTTGCATCCCGGTCT 216
..|.||||.| .||| ||.||.||.||.||||||||.||..||.||
RBAM_022470__ 194 TCGCCAAATT---GGAGACAGAAGGCGCAAAACCTGTTGCTTCAAGGACT 240
BSNT_03601___ 217 GACGATCATTTTCTGAC-CTTGGAGGAAAGAGTGGCTAAGGCAAGTGCCA 265
|||||| |.|||.|.|| .|||||.||..|.|||||.||.|||||.||||
RBAM_022470__ 241 GACGAT-ACTTTTTTACGTTTGGACGAGCGGGTGGCGAAAGCAAGCGCCA 289
BSNT_03601___ 266 ATCAGGCTGACCTTTTTGTCAGCATTCATGTGAATTCAGGGGTTGCTTCA 315
..||..|.||..|.||.||||||.|.|||..||||||||..||..|..|.
RBAM_022470__ 290 GCCAATCCGATTTATTCGTCAGCCTCCATACGAATTCAGCCGTCTCAACG 339
BSNT_03601___ 316 GCTTCAGGAACAGAAACGTATTTTCAATCTGA-TTATGAAGG-GGAGAAC 363
||.||.||.||.|||||||||||| |||..|| .|||||||| |.|| ||
RBAM_022470__ 340 GCATCGGGCACGGAAACGTATTTT-AATTCGACATATGAAGGAGCAG-AC 387
BSNT_03601___ 364 AGCCGGCGTCTGGCATCCGATATTCAGTCA-CAGCTCGTTTCTTCCTTAC 412
|||....|.||.||.|||||.||.||| || |||||.||..|.||.|||.
RBAM_022470__ 388 AGCGAAAGGCTTGCTTCCGACATCCAG-CAGCAGCTTGTCACGTCTTTAG 436
BSNT_03601___ 413 AAACGAGAGACAGGGGCGTGAAAGAATCAGACTTTTACGTCATTACATAT 462
..|.||..|||||.|||||.||||||.|....|||||.||||||||||||
RBAM_022470__ 437 GGATGAAGGACAGAGGCGTAAAAGAAGCTCCTTTTTATGTCATTACATAT 486
BSNT_03601___ 463 TCACAAATGCCAAGTGTGTTGGCGGAGCTTGGGTTTATCACTAACAGTTC 512
|||.|.|||||.||||||.||||.||..|.||.||||||||.|| |.|
RBAM_022470__ 487 TCAAAGATGCCGAGTGTGCTGGCTGAATTAGGTTTTATCACAAA---TCC 533
BSNT_03601___ 513 T---GATGCGGACAAGCTGGGAAGTGAAGAATACCAG-CAAAAG---GCC 555
| |||||||||||||||..|||.| |||.|.| |||.|| |||
RBAM_022470__ 534 TCAAGATGCGGACAAGCTGAAAAGCG----ATAACGGACAAGAGCACGCC 579
BSNT_03601___ 556 GCAGATGCGATTGTCAACGGCATTGATTCTTATTATGATCAGTAG----- 600
||.||.||..||||.|||||.||.||..|.||||| |||..|
RBAM_022470__ 580 GCGGACGCCGTTGTAAACGGAATCGAAACCTATTA----CAGCGGACGGT 625
BSNT_03601___ 600 -- 600
RBAM_022470__ 626 AA 627
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