Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03619 and RBAM_022600

See Amino acid alignment / Visit BSNT_03619 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_03619___dxs.1.9828.seq
#    -bsequence dna-align/RBAM_022600___dxs.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03619___dxs-RBAM_022600___dxs.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03619___dxs-RBAM_022600___dxs.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03619___dxs
# 2: RBAM_022600___dxs
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1916
# Identity:    1529/1916 (79.8%)
# Similarity:  1529/1916 (79.8%)
# Gaps:          28/1916 ( 1.5%)
# Score: 6033.5
# 
#
#=======================================

BSNT_03619___      1 TTGGATCTTTTATCAATACAGGACCCGTCGTTTTTAAAAAACATGTCCAT     50
                     |||||||||||||||||||||||||||||.|||.|.|||||.|||||.||
RBAM_022600__      1 TTGGATCTTTTATCAATACAGGACCCGTCATTTCTTAAAAAGATGTCAAT     50

BSNT_03619___     51 TGA-----TGAATTAGAGAAATTAAGTGATGAAATCCGTCAGTTT-TTAA     94
                     |||     ||.|  ||||   .|.|||||.||.||||| ||.||| .|.|
RBAM_022600__     51 TGAACAGCTGGA--AGAG---CTGAGTGAGGAGATCCG-CAATTTCCTCA     94

BSNT_03619___     95 TTACAAGTTTATCCGCTTCCGGCGGCCACATCGGCCCAAACTTAGGTGTC    144
                     |.|||....|.||.||.||.||||||||.|||||.||.|||.|.||.||.
RBAM_022600__     95 TCACATCGCTGTCTGCCTCTGGCGGCCATATCGGGCCGAACCTCGGGGTT    144

BSNT_03619___    145 GTAGAGCTTACTGTTGCCCTGCATAAGGAATTTAACAGCCCGAAAGACAA    194
                     ||.|||||.||..||||.||.||.||.||||||.||||.||||||||.||
RBAM_022600__    145 GTCGAGCTGACAATTGCGCTTCACAAAGAATTTGACAGTCCGAAAGATAA    194

BSNT_03619___    195 ATTTTTATGGGATGTAGGCCATCAGTCGTATGTCCATAAGCTGCTGACAG    244
                     |||||||||||||||.||.||||||||.|||||.|||||.|||.|.||.|
RBAM_022600__    195 ATTTTTATGGGATGTCGGACATCAGTCCTATGTTCATAAACTGTTAACCG    244

BSNT_03619___    245 GACGCGGAAAAGAATTTGCGACGCTT-CGCCAGTACAAAGGGCTTTGCGG    293
                     |||||||.||.||.||||..|| ||| |||||.||.||||||||||||||
RBAM_022600__    245 GACGCGGCAAGGAGTTTGAAAC-CTTGCGCCAATATAAAGGGCTTTGCGG    293

BSNT_03619___    294 ATTTCCAAAGCGGAGTGAAAGCGAGCACGATGTTTGGGAAACCGGGCACA    343
                     .||.||.||.||.||.||||||||.||.||.||.||||||||.||.||||
RBAM_022600__    294 TTTCCCGAAACGCAGCGAAAGCGAACATGACGTATGGGAAACAGGCCACA    343

BSNT_03619___    344 GCTCGACTTCTCTGTCAGGCGCGATGGGAATGGCAGCTGCCCGTGATATT    393
                     ||||.||.||.||.||||||||||||||||||||.||.||||||||||||
RBAM_022600__    344 GCTCAACCTCGCTCTCAGGCGCGATGGGAATGGCTGCCGCCCGTGATATT    393

BSNT_03619___    394 AAAGGAACGGATGAATATATTATTCCGATCATTGGTGACGGCGCGCTGAC    443
                     ||||||.||.|.||||||||.||.|||||.||.||.||||||||..|.||
RBAM_022600__    394 AAAGGATCGAAAGAATATATCATCCCGATTATCGGAGACGGCGCTTTAAC    443

BSNT_03619___    444 CGGCGGTATGGCGCTCGAAGCCCTTAACCACATCGGCGACGAGAAAAAAG    493
                     |||.||.||||||||.|||||.||.|||||.|||||.||.||||||||||
RBAM_022600__    444 CGGAGGAATGGCGCTTGAAGCGCTGAACCATATCGGTGATGAGAAAAAAG    493

BSNT_03619___    494 ACATGATTGTCATCCTTAATGATAATGAAATGAGTATTGCGCCAAACGTC    543
                     |||||||.||||||||.|||||||||||.|||||.||||||||.||.|||
RBAM_022600__    494 ACATGATCGTCATCCTGAATGATAATGAGATGAGCATTGCGCCGAATGTC    543

BSNT_03619___    544 GGTGCCATTCACTCTATGCTCGGACGGCTCCGCACTGCGGGGAAATACCA    593
                     ||.||.|||||.||||||||.||||||||.|||||.||.||.|||||.||
RBAM_022600__    544 GGGGCGATTCATTCTATGCTTGGACGGCTTCGCACGGCCGGCAAATATCA    593

BSNT_03619___    594 GTGGGTCAAAGATGAGCTTGAATACTTATTTAAAAAGATTCCGGCAGTTG    643
                     .|||||.|||||.|||||||||||.||||||||....||.|||||.||.|
RBAM_022600__    594 ATGGGTAAAAGACGAGCTTGAATATTTATTTAAGCGCATCCCGGCCGTCG    643

BSNT_03619___    644 GGGGCAAGCTTGCCGCCACGGCGGAACGGGTCAAAGACAGCCTGAAATAC    693
                     |.||.||..|.||||||||.||.||||||.|.||||||||..|||||||.
RBAM_022600__    644 GCGGAAAATTGGCCGCCACAGCTGAACGGATAAAAGACAGTTTGAAATAT    693

BSNT_03619___    694 ATGCTCGTCTCCGGAATGTTTTTCGAGGAGCTCGGTTTTACGTATTTGGG    743
                     |||||.||.||.||.||||||||.||.|||||.||.|||||||||||.||
RBAM_022600__    694 ATGCTTGTGTCAGGCATGTTTTTTGAAGAGCTGGGCTTTACGTATTTAGG    743

BSNT_03619___    744 CCCAGTGGACGGACATTCTTATCATGAGCTGATTGAGAATCTTCAATACG    793
                     |||.||.|||||.|||||.||.||.||.|||.||||.||.||.|||||||
RBAM_022600__    744 CCCGGTTGACGGTCATTCCTACCACGAACTGTTTGAAAACCTGCAATACG    793

BSNT_03619___    794 CCAAAAAAACGAAAGGCCCTGTTCTTCTGCACGTCATTACGAAAAAAGGG    843
                     ||||||||||||||||||||||.||..|.||.|||||.||||||||.||.
RBAM_022600__    794 CCAAAAAAACGAAAGGCCCTGTCCTGTTACATGTCATCACGAAAAAGGGC    843

BSNT_03619___    844 AAGGGGTACAAACCGGCTGAGACCGATACGATTGGGACATGGCATGGTAC    893
                     ||.||.||.|||||||||||||||||.||.||.||.||||||||.||.||
RBAM_022600__    844 AAAGGCTATAAACCGGCTGAGACCGACACAATCGGCACATGGCACGGAAC    893

BSNT_03619___    894 CGGACCATATAAAATTAATACCGGTGACTTTGTAAAGCCGAAAGCCGCAG    943
                     .||.||.||||||||.|||||.|||||.||.||.||||||||||||||.|
RBAM_022600__    894 GGGTCCGTATAAAATCAATACGGGTGATTTCGTCAAGCCGAAAGCCGCGG    943

BSNT_03619___    944 CTCCTTCGTGGAGCGGTCTTGTCAGCGGAACTGTGCAGCGA-ATGGCGCG    992
                     |.|||||.||||||||.|||||||||||.||.|||||| || .||||.||
RBAM_022600__    944 CGCCTTCATGGAGCGGACTTGTCAGCGGCACCGTGCAG-GAGCTGGCACG    992

BSNT_03619___    993 CGAGGACGGAC-GCATTGTAGCCATTACGCCGGCTATGCCTGTCGGTTCA   1041
                     .||||| .||| |.|||||.||||||||.|||||.|||||.|||||.||.
RBAM_022600__    993 TGAGGA-TGACAGAATTGTTGCCATTACACCGGCCATGCCGGTCGGCTCT   1041

BSNT_03619___   1042 AAGCTTGAAGGCTTCGCAAAGGAATTCCCTGACCGGATGTTCGACGTAGG   1091
                     ||.||.|||||.||.||.||.|||||||||||.||.|||||.||.||.||
RBAM_022600__   1042 AAACTGGAAGGGTTTGCGAAAGAATTCCCTGAACGCATGTTTGATGTCGG   1091

BSNT_03619___   1092 AATCGCAGAACAGCATGCCGCAACAATGGCTGCAGCTATGGCAATGCAGG   1141
                     ||||||||||||||||||.||.||.|||||.||.|..|||||..|.||.|
RBAM_022600__   1092 AATCGCAGAACAGCATGCGGCGACGATGGCGGCTGGAATGGCGCTCCAAG   1141

BSNT_03619___   1142 GTATGAAGCCGTTTTTGGCGATTTACTCAACCTTCCTGCAAAGGGCATAT   1191
                     |.||||||||||||.|.||||||||.||.|||||..||||..||||.||.
RBAM_022600__   1142 GCATGAAGCCGTTTCTTGCGATTTATTCGACCTTTTTGCAGCGGGCGTAC   1191

BSNT_03619___   1192 GACCAAGTTGTTCATGACATCTGCCGCCAAAACGCTAATGTGTTTATTGG   1241
                     ||.||.||.||.||||||||||||||.||||||||.|||||.|||||.||
RBAM_022600__   1192 GATCAGGTCGTCCATGACATCTGCCGTCAAAACGCGAATGTATTTATCGG   1241

BSNT_03619___   1242 AATTGACCGTGCAGGACTCGTTGGCGCTGATGGAGAGACACATCAAGGCG   1291
                     .||||||||.||.||..|.||.|||||.||.||.|||||.||||||||||
RBAM_022600__   1242 CATTGACCGCGCCGGTTTGGTCGGCGCCGACGGGGAGACGCATCAAGGCG   1291

BSNT_03619___   1292 TGTTTGATATTGCGTTTATGCGCCACATTCCAAACATGGTCTTAATGATG   1341
                     |.|||||.||.||.|||.||||.||.||.||||||.|.||.|||||||||
RBAM_022600__   1292 TCTTTGACATCGCCTTTTTGCGGCATATACCAAACCTCGTTTTAATGATG   1341

BSNT_03619___   1342 CCGAAAGACGAAAATGAAGGCCAGCACATGGTTCATACAGCACTTAGCTA   1391
                     |||||.||.|||||||||||||..||.|||||..|||||||.||||..||
RBAM_022600__   1342 CCGAAGGATGAAAATGAAGGCCGCCATATGGTCAATACAGCCCTTAATTA   1391

BSNT_03619___   1392 TGACGAAGGCCCGATAGCAATGCGTTTTCCGCGCGGAAACGGACTCGGCG   1441
                     |||.||.||||||||.||.|||||.||.||||||||||||||.|||||||
RBAM_022600__   1392 TGAGGAGGGCCCGATCGCGATGCGCTTCCCGCGCGGAAACGGGCTCGGCG   1441

BSNT_03619___   1442 TAAAAATGGATGAACAGTTGAAAACGATTCCGATCGGTACGTGGGAGGTG   1491
                     ||||.||||||.||.||.|||||||.|||||||||||.||.|||||.|||
RBAM_022600__   1442 TAAAGATGGATAAAGAGCTGAAAACCATTCCGATCGGAACATGGGAAGTG   1491

BSNT_03619___   1492 TTGCGTCCAGGGAACGATGCTGTCATCTTAACATTCGGCACAACAATCGA   1541
                     .|.|||||.||.||.||.||.|||||.|||||||||||.||.||.||.||
RBAM_022600__   1492 CTCCGTCCCGGAAAAGACGCGGTCATTTTAACATTCGGTACGACCATTGA   1541

BSNT_03619___   1542 AATGGCGATTGAAGCAGCCGAAGAGCTGCAGAAAGAAGGCCTTTCCGTGC   1591
                     |||||||.|.|||||.||.|||||.|||||.|||||||||||.|||||||
RBAM_022600__   1542 AATGGCGCTGGAAGCGGCTGAAGAACTGCAAAAAGAAGGCCTGTCCGTGC   1591

BSNT_03619___   1592 GCGTTGTGAATGCGCGTTTTATTAAGCCGATTGATGAAAAGATGATGAAG   1641
                     |.||.|||||||||||.||.||.||.|||||||||.||.|.|||||||||
RBAM_022600__   1592 GTGTCGTGAATGCGCGGTTCATAAAACCGATTGATAAACAAATGATGAAG   1641

BSNT_03619___   1642 AGTATCCTAAAAGAAGGCTTGCCAATTTTAACAATTGAAGAAGCGGT-CT   1690
                     ...||.||.||.|||||..||||.||||||||.||.||||||||.|| ||
RBAM_022600__   1642 GCCATTCTTAATGAAGGTCTGCCGATTTTAACGATAGAAGAAGCCGTGCT   1691

BSNT_03619___   1691 TAGAAGGCGGTTTCGGAAGCTCGATTTTAGAATTCGCTCATGATCAAGG-   1739
                     | ||||||||.|||||.|||.|||||.|.||||.|||||||||.|..|| 
RBAM_022600__   1692 T-GAAGGCGGATTCGGCAGCACGATTCTTGAATACGCTCATGACCTCGGC   1740

BSNT_03619___   1740 -TGAATATCATACTCCGATCGACAGAATGGGTATACCTGATCGGTTTATT   1788
                      ||  ||||||||.|||||.|||||||||||.||.||.||.|||||||||
RBAM_022600__   1741 ATG--TATCATACACCGATTGACAGAATGGGCATCCCAGACCGGTTTATT   1788

BSNT_03619___   1789 GAACACGGAAGCGTAACGGCGCTTCTTAAGGAAATTGGACTGACAAAACA   1838
                     ||||||||.||||||||.||.||.|||.|.|||||.||.||.||.||  .
RBAM_022600__   1789 GAACACGGCAGCGTAACCGCCCTGCTTGAAGAAATCGGTCTCACGAA--G   1836

BSNT_03619___   1839 GC--AGGTGGCAAATCGTATTAGATTACTGATGCCGTCAAAGACACACAA   1886
                     ||  ||||....||.||.||.|.|.|.|||||||||.|.||||||||.||
RBAM_022600__   1837 GCTGAGGTTATGAACCGGATCAAACTGCTGATGCCGCCGAAGACACATAA   1886

BSNT_03619___   1887 AGGAATTGGATCATGA   1902
                     ||||||||||||||||
RBAM_022600__   1887 AGGAATTGGATCATGA   1902


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