Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03623 and RBAM_022630

See Amino acid alignment / Visit BSNT_03623 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:54
# Commandline: needle
#    -asequence dna-align/BSNT_03623___xseA.1.9828.seq
#    -bsequence dna-align/RBAM_022630___xseA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03623___xseA-RBAM_022630___xseA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03623___xseA-RBAM_022630___xseA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03623___xseA
# 2: RBAM_022630___xseA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1399
# Identity:    1071/1399 (76.6%)
# Similarity:  1071/1399 (76.6%)
# Gaps:          53/1399 ( 3.8%)
# Score: 4101.0
# 
#
#=======================================

BSNT_03623___      1 ATGGTGCAGGAATGCTTAGGAGAGGAGTTTTTAGACATGGGTGAAGCAGC     50
                            |.|||     |||||.|.||      ||.|||.|||||||.||
RBAM_022630__      1 -------ATGAA-----AGGAGTGCAG------GATATGAGTGAAGCGGC     32

BSNT_03623___     51 GTATGTGACCGTCTCAGCGCTGACAAAGTATATAAAACGAAAATTCGATG    100
                     .|||||.||.||.||.||||||||.||.||.||.||||||||||||||||
RBAM_022630__     33 ATATGTCACGGTTTCCGCGCTGACCAAATACATTAAACGAAAATTCGATG     82

BSNT_03623___    101 TAGATCCTCACCTTGAAAATATTTGGATTAAAGGCGAATTGTCGAATGTA    150
                     |.||.|||||.||||||.|.|||||||||||.||.||..|.||.|||||.
RBAM_022630__     83 TGGACCCTCATCTTGAAGACATTTGGATTAAGGGTGAGCTCTCCAATGTT    132

BSNT_03623___    151 AAGATACACACACGAGGGCATATTTATTTCACTTTAAAAGACGAAAACGC    200
                     ||.||.||.||..||||.||.||.|||||.||.||||||||.||..|.||
RBAM_022630__    133 AAAATTCATACGAGAGGCCACATCTATTTTACATTAAAAGATGAGCATGC    182

BSNT_03623___    201 AAGAATGCAGTCGGTGATGTTCGCGAGACAAAG--CGAGCGTCTGCCTTT    248
                     ..|.||||||.|.||.|||||...|||.|||||  |||  |.||..|.||
RBAM_022630__    183 CCGCATGCAGGCCGTCATGTTTCAGAGGCAAAGTTCGA--GGCTTGCGTT    230

BSNT_03623___    249 TAAACCTGAAAACGGAATGAAAGTGCTGGTCAGAGGCGGAATTTCCGTAT    298
                     |||.||.|||.||||||||||.||..|.||.||||||||.||.|||||.|
RBAM_022630__    231 TAAGCCAGAAGACGGAATGAAGGTCATCGTAAGAGGCGGCATCTCCGTCT    280

BSNT_03623___    299 ATGAACCGAGCGGAAACTATCAATTATATGCCAAAGAAATGCAGCCTGAC    348
                     |||||||||||||||.||||||..|.||.||.||||||||||||||.|||
RBAM_022630__    281 ATGAACCGAGCGGAAGCTATCAGCTGTACGCGAAAGAAATGCAGCCGGAC    330

BSNT_03623___    349 GGGGTTGGAGCGCTTTATTTAGCGTACGAAGAATTAAAAAAGAAGCTTGC    398
                     ||.||.||.|||||.||.|||||.||.|||||||||||.||.||.|||||
RBAM_022630__    331 GGTGTGGGGGCGCTCTACTTAGCATATGAAGAATTAAAGAAAAAACTTGC    380

BSNT_03623___    399 CGGAGAAGGTTTATTTGACGACC-GCTACAAAAAACA---AATCCCCGCA    444
                     |||.|||||.||.|||||.|||| ||    |.||.||   .||||||||.
RBAM_022630__    381 CGGCGAAGGGTTGTTTGATGACCGGC----ATAAGCAGGCCATCCCCGCT    426

BSNT_03623___    445 TTTCCAGCCACAATCGGGGTTGTGACATCTCCAACGGGTGCCGCTGTCAG    494
                     |||||.|||||.||||||||.||.||.||.||.|||||.||.||.|||||
RBAM_022630__    427 TTTCCGGCCACGATCGGGGTCGTCACGTCACCGACGGGAGCAGCCGTCAG    476

BSNT_03623___    495 AGACGTTATTACAACTCTAAAAAGAAGATATCCCCTTGTAAAAGTCATTG    544
                     ||||||.|||||.||.||.|||||||||||.||||||||.||||||||||
RBAM_022630__    477 AGACGTCATTACCACACTCAAAAGAAGATACCCCCTTGTGAAAGTCATTG    526

BSNT_03623___    545 TTCTTCCAGCGCTCGTACAAGGTGAAAATGCGAGCAGATCCATCGTTACG    594
                     |.|||||.||||||||.||||||||||||||.||||||||.||.||.|.|
RBAM_022630__    527 TGCTTCCCGCGCTCGTTCAAGGTGAAAATGCCAGCAGATCGATTGTGAAG    576

BSNT_03623___    595 CGCATTGAAGAGGCAAATGAAAAAGAGATTTGCGACGTATTAATTGTCGG    644
                     |||||||||||.||.||||.|.||.|.||.||.|||||..|.||.|||||
RBAM_022630__    577 CGCATTGAAGAAGCCAATGCACAAAAAATGTGTGACGTCCTGATCGTCGG    626

BSNT_03623___    645 GAGAGGCGGCGGTTCGATAGAAGAACTGTGGGCATTCAATGAAGAAATTG    694
                     .||.||.||.||.|||||.||||||.||||||||||.||.||||||||.|
RBAM_022630__    627 AAGGGGAGGGGGCTCGATCGAAGAATTGTGGGCATTTAACGAAGAAATCG    676

BSNT_03623___    695 TAGCACGCGCCATCTTTGCTTCCAATATTCCGATTATATCGGCAGTCGGA    744
                     |.||.||.||.||.|||||||||...||||||||||||||.||.||||||
RBAM_022630__    677 TGGCCCGGGCGATTTTTGCTTCCGCCATTCCGATTATATCAGCCGTCGGA    726

BSNT_03623___    745 CATGAGACGGATTTTACGATCAGTGATTTTGTCGCCGATATCAGAGCCGC    794
                     |||||.||.||||||||.|||||||||||.|||||.||||||.|.||.||
RBAM_022630__    727 CATGAAACAGATTTTACAATCAGTGATTTCGTCGCGGATATCCGGGCGGC    776

BSNT_03623___    795 GACGCCGACAGGAGCAGCTGAGATTGCTGTGCCTCATACCACTGATTTAA    844
                     .||||||||||||||.||.||.||.||.||.||.||.||.||.||.||||
RBAM_022630__    777 AACGCCGACAGGAGCGGCAGAAATCGCCGTCCCCCACACGACGGACTTAA    826

BSNT_03623___    845 TCGAACGGGCAAAAACAGCGGAAGTCAGAATGACAAGAGCAATGCAGCAG    894
                     |.||||||.|||||||.|||||||||.|..||||||||||.|||||||||
RBAM_022630__    827 TGGAACGGACAAAAACGGCGGAAGTCCGCCTGACAAGAGCGATGCAGCAG    876

BSNT_03623___    895 CACCTCGGCCAGAAAAAAGAACGGATTCAAACGCTGCAATCGTCCTATGC    944
                     ||..||.||.||||||||||||||.|||||.||||.||.||.|||||.||
RBAM_022630__    877 CATATCAGCAAGAAAAAAGAACGGGTTCAATCGCTCCAGTCATCCTACGC    926

BSNT_03623___    945 CTTTCGTTTTCCAAAGCGTTTGTATGCGCAAAAAGAGCAGCAGTTTGACC    994
                     .||.||||||||.||.||.||||||.|.||||||||.|||||||||||||
RBAM_022630__    927 GTTCCGTTTTCCGAAACGATTGTATACCCAAAAAGAACAGCAGTTTGACC    976

BSNT_03623___    995 TCGCGTACCAGCAGTTTCAAGCACAGCTGACCGCTCTTTTAGATCGGAAA   1044
                     |...|||.||||||||.||..|||||||.||.|..|||...||..|||||
RBAM_022630__    977 TTTTGTATCAGCAGTTCCAGTCACAGCTCACAGGGCTTACGGACAGGAAA   1026

BSNT_03623___   1045 AGCAGACAGCTGGAGCGTGAA-ACGTACAGATTAGAGGCACTGCATCCTC   1093
                     ...||.||||||||||| ||| ||||||||||||..|||.||.||.||  
RBAM_022630__   1027 CAAAGGCAGCTGGAGCG-GAATACGTACAGATTAACGGCGCTCCACCC--   1073

BSNT_03623___   1094 ATGAA---CAGCTGAAACAAGCGAGAACACGATACCAGGAACAAACAAAT   1140
                      ||||   |||||||||||.||||.||.|||.|||.||||.|...|||||
RBAM_022630__   1074 -TGAAACCCAGCTGAAACAGGCGAAAAAACGGTACGAGGAGCGCTCAAAT   1122

BSNT_03623___   1141 CAGCT-----GAGAAAAAATATGAATATCCAAATGAAGCAGCTGCATTCC   1185
                     |||||     |     ||..||||||.||||..||||||||||.|||||.
RBAM_022630__   1123 CAGCTCGCCCG-----AAGCATGAATGTCCAGCTGAAGCAGCTTCATTCG   1167

BSNT_03623___   1186 CAATTTCAAACCGTTCTTGGCAAGCTGAATGCACTAAGTCCTCTTCAAGT   1235
                     ||.|||||.||.||||||||.||.|||||||||.|||||||.|||||.||
RBAM_022630__   1168 CAGTTTCAGACGGTTCTTGGTAAACTGAATGCATTAAGTCCCCTTCAGGT   1217

BSNT_03623___   1236 GATGGAAAGAGGATACAGCTTGGCTTATAAAGAAGATAAACTCATTAAAA   1285
                     ||||||.|||||||||||..||||.||||||||..|.||.||.||.||||
RBAM_022630__   1218 GATGGAGAGAGGATACAGTCTGGCCTATAAAGACAAAAAGCTGATCAAAA   1267

BSNT_03623___   1286 GTGTCAGTCAAATAGAAGAGCAGGACCGGCTTGAAGTCAAGCTGAAGGAT   1335
                     |.||...||||.|.|||.|..|.||...|||||||||.|||.|||..||.
RBAM_022630__   1268 GCGTTGATCAAGTGGAACAAAATGATACGCTTGAAGTAAAGATGACAGAC   1317

BSNT_03623___   1336 GGCGTGCTGACCTGTGAAGTATTAGAAAAGAGAGGGGAA-GAAAAATGA   1383
                     |||||.|||||.|||||||||||..||||||||||.||| ||.||    
RBAM_022630__   1318 GGCGTTCTGACGTGTGAAGTATTGCAAAAGAGAGGCGAACGATAA----   1362


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