Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03643 and RBAM_022720
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:55
# Commandline: needle
# -asequence dna-align/BSNT_03643___spoIIIAE.1.9828.seq
# -bsequence dna-align/RBAM_022720___spoIIIAE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03643___spoIIIAE-RBAM_022720___spoIIIAE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03643___spoIIIAE-RBAM_022720___spoIIIAE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03643___spoIIIAE
# 2: RBAM_022720___spoIIIAE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1244
# Identity: 954/1244 (76.7%)
# Similarity: 954/1244 (76.7%)
# Gaps: 79/1244 ( 6.4%)
# Score: 3725.0
#
#
#=======================================
BSNT_03643___ 1 TTGAAGCGCTTTCAATGGG--------TTTTGCTTTTGGCCGTGCTGATC 42
.||||||||||||..|||| |||| ||.||
RBAM_022720__ 1 ATGAAGCGCTTTCGGTGGGCGGGAGCTTTTT--------------TGTTC 36
BSNT_03643___ 43 ATAGCAGGCC--------GTGCAGA---AAT-TGTACAAGCAGCTGGTAA 80
|| || .|.|||| ||| |||||||||.||.||.|
RBAM_022720__ 37 AT------CCTCTTATTTTTTCAGACTGAATGTGTACAAGCTGCCGGAA- 79
BSNT_03643___ 81 TGCAGAAC-------------AAACGGAAG---ACCATGCTGAAACAGCC 114
||| || ||||.|.|| |||| .|||.|.||.
RBAM_022720__ 80 --CAG-ACGGTGCGTCGCAGGAAACCGCAGTTCACCA---AGAATCCGCT 123
BSNT_03643___ 115 GAGCAATTAGCGGAAAGGACAGCAGCC----TCGCTTGAAACAGATAAG- 159
||..||.|.|||.||| |||||.| .||||..|||||| |||
RBAM_022720__ 124 GATGAAGTGGCGAAAA----AGCAGGCCGAAGCGCTGAAAACAG--AAGG 167
BSNT_03643___ 160 -ATCGGAGAATTTTGGAATGACATTATGACAGAATACGGCGGACTGCTGC 208
||||||.|.||||||.|.|||||.|||||||||||||||||.||.||||
RBAM_022720__ 168 CATCGGAAAGTTTTGGGACGACATCATGACAGAATACGGCGGTCTTCTGC 217
BSNT_03643___ 209 CGGAAAGCCAAAAAGGCAGCTTAATGGAGTTTATCAATGGCGATAAATCA 258
|.|||||||||||.||.|||.|.||.||.|||||.||.||.||.|||.|.
RBAM_022720__ 218 CTGAAAGCCAAAAGGGAAGCATCATCGACTTTATTAACGGAGAAAAAACG 267
BSNT_03643___ 259 TTCTCACCGCAAGAATGGCTGAAAGCTCTCTTTTCTTATTTGTTTCATGA 308
|||||||||.|.|.|||||||||.|||.|.|||||.||.|||||||||||
RBAM_022720__ 268 TTCTCACCGGAGGCATGGCTGAAGGCTTTATTTTCATACTTGTTTCATGA 317
BSNT_03643___ 309 AGTGCTTGCCAACGGAAAGCTGCTGGGCACATTGATTTTGCTCACGATTT 358
||||||.||.|||||||||||.|||||.||.||||||.|.|||||.||||
RBAM_022720__ 318 AGTGCTCGCAAACGGAAAGCTTCTGGGAACTTTGATTCTTCTCACCATTT 367
BSNT_03643___ 359 TTTGCGTCATTCTGCAGCTTTTGCAAAATGCGTTTCAGCAAAGCACCGTC 408
||||.||||||||||||||..|||||||||||||.|||||.|||||||||
RBAM_022720__ 368 TTTGTGTCATTCTGCAGCTCCTGCAAAATGCGTTCCAGCAGAGCACCGTC 417
BSNT_03643___ 409 AGTAAGGTCGCTTACTCAATTGTGTACATGGTGCTGATTATCCTTGCGCT 458
||.||.||.|||||..||||.||.|||||||||||||||||.|| ||||
RBAM_022720__ 418 AGCAAAGTGGCTTATGCAATCGTCTACATGGTGCTGATTATTCT--CGCT 465
BSNT_03643___ 459 T--AATAGCTTTCATGTGGCAATTAACTATGCAACTGAGGCGATTCAGAC 506
| ||.|||||||||||.||..|.||.|||||.|.|||.|||||.|||||
RBAM_022720__ 466 TTAAACAGCTTTCATGTTGCCGTCAATTATGCCAGTGAAGCGATCCAGAC 515
BSNT_03643___ 507 GATGACCAGCTTTATCCTGGCGCTCATTCCGCTCCTCTTGGCGCTTTTGG 556
||||||.|||||.||.||.||||||||.|||||..|..|.||||||||||
RBAM_022720__ 516 GATGACAAGCTTCATTCTCGCGCTCATCCCGCTTTTACTCGCGCTTTTGG 565
BSNT_03643___ 557 CTTCCTCAGGCGGAGCTGTATCTGCTGCCTTCTTTCATCCTGTTATCCTC 606
|.||.||.||.|||||.||.||.||.||.||.|||||.||.|||||..|.
RBAM_022720__ 566 CGTCTTCCGGGGGAGCCGTTTCCGCAGCTTTTTTTCACCCCGTTATTTTA 615
BSNT_03643___ 607 TTCCTGATGAACACGAGCGGTCTCTTGATTCAGAATATCGTCATGCCGCT 656
||.||||||||.||||||||.||..|.|||||.||.||||||||||||||
RBAM_022720__ 616 TTTCTGATGAATACGAGCGGCCTTCTCATTCAAAACATCGTCATGCCGCT 665
BSNT_03643___ 657 GATTTTTTTATCAGCGATTCTGAGCATTGTCAGCACGATGACTGAACAAT 706
.||.||..|.|||||||||.|.|||||.||||||||||||||.||.||||
RBAM_022720__ 666 TATCTTCCTGTCAGCGATTTTAAGCATCGTCAGCACGATGACGGATCAAT 715
BSNT_03643___ 707 ACAAAGTAACGCAGCTGGCTAACCTGCTCAGAAATATCGCCATCGGAGCG 756
|.|||||.||||||||.||.||.|||||||||||||||||.|||||||||
RBAM_022720__ 716 ATAAAGTCACGCAGCTTGCCAATCTGCTCAGAAATATCGCGATCGGAGCG 765
BSNT_03643___ 757 CTGGCTGTTTTTCTTACCATCTTTCTCGGCGTCATCTCTGTTCAGGGAGC 806
||.||.||.|||||.|||.|.|||||||||||||||||.||.|||||.||
RBAM_022720__ 766 CTTGCCGTATTTCTCACCGTGTTTCTCGGCGTCATCTCCGTACAGGGGGC 815
BSNT_03643___ 807 CTCGGCTGCAGTGACAGACGGCATTACGCTCAGGACGGCTAAATTTATAA 856
.||||||||.|||||.|||||.||||||||||||||.||.||||||||||
RBAM_022720__ 816 TTCGGCTGCCGTGACGGACGGGATTACGCTCAGGACTGCAAAATTTATAA 865
BSNT_03643___ 857 CCGGAAATTTTATTCCTGTGCTTGGCCGAATGTTTACAGACGCAACAGAT 906
|.||.|||||||||||.||.||.|||||.||||||||.||.||.||.|||
RBAM_022720__ 866 CAGGCAATTTTATTCCCGTACTCGGCCGGATGTTTACGGATGCGACGGAT 915
BSNT_03643___ 907 ACAGTAATCAGCGCCTCTTTACTGCTGAAAAATACGGTAGGGATTCTCGG 956
||.||.|||||||||||..|.||..|.|||||.||.||.||.||.|||||
RBAM_022720__ 916 ACGGTCATCAGCGCCTCGCTCCTATTAAAAAACACCGTGGGAATCCTCGG 965
BSNT_03643___ 957 TGTCGCTATTTTGATCTGTATTGCGGCATTTCCGGCAATCAAAGTGCTTT 1006
.||||..|||||||||||.||..|.||.||||||||.|||||||||||.|
RBAM_022720__ 966 AGTCGGAATTTTGATCTGCATCTCCGCGTTTCCGGCGATCAAAGTGCTCT 1015
BSNT_03643___ 1007 CCCTCGCTTTTATTTATAAGCTGGCAGCCGCGATTCTTCAGCCACTAGGA 1056
|.||||||||||||||||||||.||.|||||.|||||.|||||.||.|||
RBAM_022720__ 1016 CGCTCGCTTTTATTTATAAGCTCGCGGCCGCTATTCTGCAGCCGCTCGGA 1065
BSNT_03643___ 1057 GGCGGGCCCGTCATCACCTGCCTCGACGTCATCAGCAAAAGCGTCATTTA 1106
||||||||||||||.||.|||||||.|||||||||||.||||||..|.||
RBAM_022720__ 1066 GGCGGGCCCGTCATTACGTGCCTCGGCGTCATCAGCAGAAGCGTACTGTA 1115
BSNT_03643___ 1107 TATTTTTGCAGCTCTCGCCATTGTGTCTCTCATGTTTTTTTTAAGCCTTA 1156
||||||.||.||.||||||||.||.||||||||||||||..|.|||.|.|
RBAM_022720__ 1116 TATTTTCGCGGCGCTCGCCATCGTCTCTCTCATGTTTTTCCTCAGCATCA 1165
BSNT_03643___ 1157 CTGTCATAATCACAGCCGGAAACCTCACGATGATGATGAAATGA 1200
|.|||||.||.|||||.||.||||||||.|||||||||||||.|
RBAM_022720__ 1166 CAGTCATTATTACAGCAGGCAACCTCACCATGATGATGAAATAA 1209
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