Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03645 and RBAM_022730

See Amino acid alignment / Visit BSNT_03645 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:55
# Commandline: needle
#    -asequence dna-align/BSNT_03645___spoIIIAD.1.9828.seq
#    -bsequence dna-align/RBAM_022730___spoIIIAD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03645___spoIIIAD-RBAM_022730___spoIIIAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03645___spoIIIAD-RBAM_022730___spoIIIAD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03645___spoIIIAD
# 2: RBAM_022730___spoIIIAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 402
# Identity:     249/402 (61.9%)
# Similarity:   249/402 (61.9%)
# Gaps:          99/402 (24.6%)
# Score: 1019.0
# 
#
#=======================================

BSNT_03645___      1 TTGCAGATTGACATTGTTCAAATTGTAGGTTTAGGGCTGATCGCCACCTT     50
                                                                       
RBAM_022730__      0 --------------------------------------------------      0

BSNT_03645___     51 CCTTTCTTTAATTGTAAAAGAACAAAAGCCGACTTTTGCGTTTTTAATCG    100
                                                                .|.||.|
RBAM_022730__      1 -------------------------------------------ATGATTG      7

BSNT_03645___    101 TCGTTTTTGCCGGATGTGCCATTTTTCTTTATTTGGTAGACCAAATCTAC    150
                     ||||.||...|||.||.|..||.|||||||||.|..|.|||||.||.|||
RBAM_022730__      8 TCGTCTTCAGCGGCTGCGTGATCTTTCTTTATCTCATCGACCAGATTTAC     57

BSNT_03645___    151 GACATTATTCGAATGATAGAAAAAATTGCGATTAATGCAAATGTCAACAT    200
                     ||||||||..||||||||||||||||.||..|.||||||||||||||.||
RBAM_022730__     58 GACATTATCAGAATGATAGAAAAAATAGCCGTCAATGCAAATGTCAATAT    107

BSNT_03645___    201 GGTCTATGTTGAAACCATTTTAAAGATTATCGGAATCGCCTATATTGCTG    250
                     |||||||||.||||||||||||||.||||||||.||||||||.||.||||
RBAM_022730__    108 GGTCTATGTGGAAACCATTTTAAAAATTATCGGCATCGCCTACATCGCTG    157

BSNT_03645___    251 AATTCGGGGCACAGCTCACAAAAGATGCCGGTCAAGGAGCCATCGCCTCG    300
                     |||||||.||.|||||.|||||.|||||.||.||.|||||.||.||.|||
RBAM_022730__    158 AATTCGGAGCGCAGCTGACAAAGGATGCGGGCCAGGGAGCGATTGCTTCG    207

BSNT_03645___    301 AAAATAGAATTGGCGGGGAAAATTTTAATACTCGTAATGGCTGTGCCTAT    350
                     ||||||||..||||.||.||||||||.|||||.||||||||.|||||.||
RBAM_022730__    208 AAAATAGAGCTGGCCGGAAAAATTTTGATACTGGTAATGGCCGTGCCGAT    257

BSNT_03645___    351 TTTAACCGTCATTATCGAAACGATTCTCGGACTTATACCTTCTATGTCAT    400
                     ..|.|||||||||||.||||||||||||||||||||.|||||| ||.   
RBAM_022730__    258 ACTCACCGTCATTATTGAAACGATTCTCGGACTTATTCCTTCT-TGA---    303

BSNT_03645___    401 AA    402
                       
RBAM_022730__    303 --    303


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