Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03665 and RBAM_022890

See Amino acid alignment / Visit BSNT_03665 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:57
# Commandline: needle
#    -asequence dna-align/BSNT_03665___gcvT.1.9828.seq
#    -bsequence dna-align/RBAM_022890___gcvT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03665___gcvT-RBAM_022890___gcvT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03665___gcvT-RBAM_022890___gcvT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03665___gcvT
# 2: RBAM_022890___gcvT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1133
# Identity:     824/1133 (72.7%)
# Similarity:   824/1133 (72.7%)
# Gaps:          76/1133 ( 6.7%)
# Score: 2927.5
# 
#
#=======================================

BSNT_03665___      1 ATGCTGAAAAGAACGCCGTTATTTGACCTGTATAAGGAATATGGAGGAAA     50
                     |||||||||.||||.|||.|.|.||||.|||||||.|||||.||.|||||
RBAM_022890__      1 ATGCTGAAACGAACACCGCTTTATGACGTGTATAAAGAATACGGCGGAAA     50

BSNT_03665___     51 AACGATTGATTTCGGAGGTTGGGAGCTTCCTGTTCAATTTTCTTCTATAA    100
                     ||||||||||||.|||||.||||||||.||.|||||||||||||||||.|
RBAM_022890__     51 AACGATTGATTTTGGAGGATGGGAGCTGCCGGTTCAATTTTCTTCTATTA    100

BSNT_03665___    101 AAAAAGAACACGAGGCTGTCCGAACTGCAGCCGGTTTGTTTGATGTATCT    150
                     ||.|.||.||.||.||.|||||.||...|||.||..||||||||||.||.
RBAM_022890__    101 AAGAGGAGCATGAAGCCGTCCGTACAAAAGCGGGCCTGTTTGATGTGTCC    150

BSNT_03665___    151 CATATGGGAGAAGTCGAAGTGTCAGGGAACGACAGTCTGTCTTTTTTGCA    200
                     ||||||||.|||||||||||.||.||.||.|||...|||||||||.||||
RBAM_022890__    151 CATATGGGGGAAGTCGAAGTATCCGGTAAAGACGCCCTGTCTTTTCTGCA    200

BSNT_03665___    201 AAGATTGATGACAAATGATGTTTCCGCGTTAACGCCAGG--CCGTGCTCA    248
                     ||.|.|||||||||||||.|||.|||..||||.|||.||  .||.|||  
RBAM_022890__    201 AAAAATGATGACAAATGACGTTGCCGATTTAAAGCCGGGAAACGCGCT--    248

BSNT_03665___    249 ATATACAGCGATGTGTTACCCGGATGGCGGAACCGTCGATGATTTGCTTA    298
                     .|||||.||.||||||||.||.||.|||||.||.||||||||.|||||.|
RBAM_022890__    249 TTATACCGCCATGTGTTATCCTGACGGCGGTACGGTCGATGACTTGCTGA    298

BSNT_03665___    299 TCTATCA-AAAAGAAGAGAACCGCTATCTGCTTGTCATTAATGCTTCTAA    347
                     ||||||| ||||| .||||.|.||||||||||.||.|||||.||.|||||
RBAM_022890__    299 TCTATCAGAAAAG-CGAGAGCTGCTATCTGCTCGTGATTAACGCGTCTAA    347

BSNT_03665___    348 TATAGATAAAGACTTGGCTTGGATGAAAGAACATGCAGCAGGTGATGTAC    397
                     |||.||.||||||.|.||||||.|||..||||||.|.|.|||.||.|| |
RBAM_022890__    348 TATTGAAAAAGACATCGCTTGGCTGACGGAACATACGGAAGGCGACGT-C    396

BSNT_03665___    398 AGATTGAC-AACCAGTCAGA-------TCAAATCGCGCT-CTTGGCTGTA    438
                     |...|||| ||.|||||.||       |||       || ||| ||.||.
RBAM_022890__    397 ACGCTGACGAATCAGTCTGACGGGATTTCA-------CTGCTT-GCCGTT    438

BSNT_03665___    439 CAGGGACCGAAAGCAGAAGCGG-TCTTAAAAAATCTGACAG-ATGCAGAT    486
                     |||||.|||||.||..|..||| |||| ...||.|||||.| ||| .|||
RBAM_022890__    439 CAGGGGCCGAATGCTCAGTCGGTTCTT-GCGAAGCTGACTGAATG-TGAT    486

BSNT_03665___    487 GTGTCTGCATTAAAGCCGTTTGCGTTTATTGATGAAGCCGATATCAGCGG    536
                     .||||..|.||||||||||||.|.|||||||||.|.||.||..|...|||
RBAM_022890__    487 TTGTCCTCCTTAAAGCCGTTTACATTTATTGATAAGGCGGACGTTGCCGG    536

BSNT_03665___    537 CCGCAAAGCACTTATTTCACGCACTGGCTATACGGGAGAAGACGGGTATG    586
                     .|||.|||..||..|||||.|.||.||||||||.||.||||||||.|.||
RBAM_022890__    537 ACGCCAAGTCCTGCTTTCAAGAACAGGCTATACCGGTGAAGACGGATTTG    586

BSNT_03665___    587 AAATTTACTGCCGCAGTGATGATGCTATGCA--TATTTGGAAAAAAATCA    634
                     |..|.||.|||||||.|||.|||||..|.||  |||||  ||..|.||..
RBAM_022890__    587 AGTTATATTGCCGCAATGAAGATGCGGTTCATCTATTT--AAGGAGATAC    634

BSNT_03665___    635 TCGATGCAG-GGGA-TGCAT-ACGGATTGATTCCATGCGGTCTCGGTGCA    681
                     |   ||||| |||| .|||| |.||..|..||||.|||||||||||.||.
RBAM_022890__    635 T---TGCAGCGGGAGAGCATGAAGGCCTCGTTCCGTGCGGTCTCGGCGCC    681

BSNT_03665___    682 CGTGATACACTCCGGTTTGAAGCGAAGCTCCCGCTCTACGGTCAGGAGCT    731
                     ||||||||.||..|.||||||||||||||..|..|.|||||||||||..|
RBAM_022890__    682 CGTGATACGCTGAGATTTGAAGCGAAGCTTGCTTTATACGGTCAGGAATT    731

BSNT_03665___    732 GACCCGGGATATTACACCGATTGAAGCAGGTATAGGCTTTGCTGTAAAGC    781
                     |||....||||||||||||||||||||.||.||.||.|||||.||.||.|
RBAM_022890__    732 GACGAAAGATATTACACCGATTGAAGCCGGAATCGGATTTGCCGTGAAAC    781

BSNT_03665___    782 ACAAAAAAGAGTCTGACTTTTTCGGTAAGTCAGTATTGAGTGAACAAAAA    831
                     ||||.|||||.||.||.||||||||.||.|||||||||.|.|||||.|||
RBAM_022890__    782 ACAAGAAAGATTCCGATTTTTTCGGGAAATCAGTATTGCGCGAACAGAAA    831

BSNT_03665___    832 GAAAACGGAGCGAAGCGCAAACTTGTCGGTCTCGAAATGATTGAAAAAGG    881
                     |||||.|||||...|||.||.||.|||||.||.||.||||||||||||||
RBAM_022890__    832 GAAAAAGGAGCCCCGCGAAAGCTGGTCGGACTTGAGATGATTGAAAAAGG    881

BSNT_03665___    882 GATACCGCGGCACGGATA-----TGA--------GGTTTTCCAAAATGGC    918
                     |||.|||.|.||||||||     |||        |||.||||.|      
RBAM_022890__    882 GATTCCGAGACACGGATACGCCGTGAAAAAAGACGGTGTTCCGA------    925

BSNT_03665___    919 AAGTCTGTCGGAAAGGTGACAACCGGCACGCAGTCACCGACTTTAGGGAA    968
                            ||||..|.||.||.||.||||||||.||.|||||||||..|||
RBAM_022890__    926 -------TCGGTGAAGTCACGACAGGCACGCAATCTCCGACTTTAAAGAA    968

BSNT_03665___    969 AAACGTCGGCCTTGCCTTAATTGATTCGGAAACAAGTGAGATCGGGACTG   1018
                     |||..||||||||||||||||..|..|||||...|||||..||||.||.|
RBAM_022890__    969 AAATATCGGCCTTGCCTTAATCAAAACGGAATTCAGTGAAGTCGGAACGG   1018

BSNT_03665___   1019 TTGTAGATGTAGAGATTCGCAAAAAATTAGTGAAAGCAAAGGTTGTCAAA   1068
                     ..|||||.||.||.||.||.||||||...||.|||||.|||.|||||...
RBAM_022890__   1019 AAGTAGAAGTGGAAATCCGTAAAAAAACGGTAAAAGCGAAGATTGTCCGC   1068

BSNT_03665___   1069 ACACCATTTTATAAACG-CTAA-----------   1089
                     |||||.||||||||||| |.||           
RBAM_022890__   1069 ACACCGTTTTATAAACGTCCAAAACAGAGCTGA   1101


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.