Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03673 and RBAM_022960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03673___yqxM.1.9828.seq
# -bsequence dna-align/RBAM_022960___yqxM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03673___yqxM-RBAM_022960___yqxM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03673___yqxM-RBAM_022960___yqxM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03673___yqxM
# 2: RBAM_022960___yqxM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 817
# Identity: 461/817 (56.4%)
# Similarity: 461/817 (56.4%)
# Gaps: 200/817 (24.5%)
# Score: 1277.0
#
#
#=======================================
BSNT_03673___ 1 ATGTTTCGATTGTTTTACAATCAGC---------AAAAGGCGAAGACGAA 41
|||||.|||||||| || ||||||..|||..||.
RBAM_022960__ 1 ATGTTCCGATTGTT---------GCGAATGGAAAAAAAGGGCAAGGTGAG 41
BSNT_03673___ 42 A---CTGAAAGTTCTGCTTATCTTT-CAGCTTTCAGTCATTTTCAGTCTG 87
| |.|| |..||| |||.||| |.||||||..|||||||..|.|||
RBAM_022960__ 42 ATGGCGGA---TGATGC-TATTTTTACGGCTTTCGTTCATTTTTTGCCTG 87
BSNT_03673___ 88 AC--TGCCGCAATATGCTTACAATTTTCCGATGATACAAGCGCTGCTTTT 135
.| ||.||..||.|||| ||.||..|.|.|||||||||..|..|.||.
RBAM_022960__ 88 TCCGTGACGATATGTGCT--CAGTTCACAGGTGATACAAGTTCCTCCTTC 135
BSNT_03673___ 136 CATGATATTGAAA----CATTTGATGTCTCAC---TTCAAACGTGTAAAG 178
.|||||.|..||| || ||||| | ||||||||||...||
RBAM_022960__ 136 AATGATGTAAAAAGCTTCA------GTCTC-CAGGTTCAAACGTGCGGAG 178
BSNT_03673___ 179 ACTTTCAGCATACAGATAAAAACTGCCATTATGATAAACGCTGGGATCAA 228
|.|||||..||||.|||.|..|.||||.||||||..||||||||||||||
RBAM_022960__ 179 ATTTTCAATATACGGATGACGATTGCCGTTATGACGAACGCTGGGATCAA 228
BSNT_03673___ 229 AGTGATTTGCACATATCAGATCAAACGGATACGAAAGGCAC--TGTATGC 276
||||||||.||.|||.||.|||||||.||||||..|||||| |||.|||
RBAM_022960__ 229 AGTGATTTACATATAACAAATCAAACTGATACGTCAGGCACCGTGTGTGC 278
BSNT_03673___ 277 TCACCTTTCGCCTTATTTGCTGTGCTCGAAAATACAGGTGAGAAACTTAA 326
.|..|||..|| |.|.|||.|.|||.||.|||| ||| ||| ||
RBAM_022960__ 279 GCCGCTTCAGC--TCTATGCCGAGCTGGAGAATA-AGG---GAA----AA 318
BSNT_03673___ 327 GA--------AATCAAAGTGGAAGTGGGAGCTTCATAAGCTTGAAAATGC 368
|| ..||..|.|||||.||||||||.|||| |||.|||
RBAM_022960__ 319 GAGCGGACTGTTTCTGACTGGAAATGGGAGCTCCATA------AAATTGC 362
BSNT_03673___ 369 ----CCGCA--AACCGTTA--AAGGATGGGAACGTGATCGAAAAAGGATT 410
|.||| |.||.||| || |.||.||.||..|.||.|||||..|
RBAM_022960__ 363 TTCTCAGCAGCAGCCTTTACGAA--ACGGCAATGTTGTGGATAAAGGGCT 410
BSNT_03673___ 411 TGTCTCCAATCAAATCGGCGATTCACTTTATAAAATTGAGACCAAGAAAA 460
|.|..|..||.|||...||.|..|..||||||||||||||.|
RBAM_022960__ 411 TATTACTGATAAAAAAAGCAAAACGATTTATAAAATTGAGTC-------- 452
BSNT_03673___ 461 AAA--------TGAAACCCGGCATTTATGCATTTAAAGTATATAAACCGG 502
||| ||.|.||.|||||.||.|||||.||.||.||.||.||.|
RBAM_022960__ 453 AAAGCGGTCTTTGCAGCCGGGCATATACGCATTCAAGGTTTACAAGCCTG 502
BSNT_03673___ 503 CAGGCTACCCGGCAAACG--GCAGTACATTTGAGTGGTCGGAGCCTATGA 550
.|||.||.|||||..||| |.| |.||||||||||||..|.||.||.|
RBAM_022960__ 503 AAGGGTATCCGGCGGACGAAGAA--AAATTTGAGTGGTCAAAACCGATAA 550
BSNT_03673___ 551 CGCTTGCAAAATGCGATGAAAAACCGAC--TGTCC---CTAAAAAAGAAA 595
..||.|..||||||...|||.|..|||| |.||| |||||
RBAM_022960__ 551 AACTCGTCAAATGCCGGGAACAGACGACCGTTTCCGATCTAAA------- 593
BSNT_03673___ 596 CAAAGTCGGACGTCAAAAAGGAGAATGAAACAACACAAAAGGATATACAG 645
.||||.||||||.||..| ||.|...|.|
RBAM_022960__ 594 -------------GAAAACGGAGAAAGAGCC---------GGCTGAGCCG 621
BSNT_03673___ 646 GAAAAAACAATGAAAGAAGAAACATCTCAAGAAGCTGTAACCAAAGAAAA 695
|.||||
RBAM_022960__ 622 GTAAAA-------------------------------------------- 627
BSNT_03673___ 696 TGAAACTCAATCAGACCAGAAGGAAAGCGGGGAAGAGGATGAAAAAAGCA 745
||||||||||||||..|||||||||.|.
RBAM_022960__ 628 ----------------------GAAAGCGGGGAAGAACATGAAAAAAACG 655
BSNT_03673___ 746 ATGAAGCTGATCAGTAA 762
.||||.|||||||||||
RBAM_022960__ 656 CTGAAACTGATCAGTAA 672
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