Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03685 and RBAM_023040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03685___comGB.1.9828.seq
# -bsequence dna-align/RBAM_023040___comGB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03685___comGB-RBAM_023040___comGB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03685___comGB-RBAM_023040___comGB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03685___comGB
# 2: RBAM_023040___comGB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1131
# Identity: 660/1131 (58.4%)
# Similarity: 660/1131 (58.4%)
# Gaps: 252/1131 (22.3%)
# Score: 1960.5
#
#
#=======================================
BSNT_03685___ 0 -------------------------------------------------- 0
RBAM_023040__ 1 ATGAAGCGGATTAACCGAACCTGGCCCTTGAAGGATCAAGCAGCTTTTTT 50
BSNT_03685___ 1 ----------------ATGACTGCGGG----CGGATATACGCTTCTGGAT 30
||||| || .|||||.|..||..|.||.
RBAM_023040__ 51 GAAAAGGCTCGGTGAAATGAC----GGAAAAAGGATACAGTCTGATTGAA 96
BSNT_03685___ 31 GGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAG---GC--GGCT 75
||..|..|.|||.||.||||.|||.||.||||..|.||| || .|||
RBAM_023040__ 97 GGGCTCAGACTGCTGCAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCT 146
BSNT_03685___ 76 GACTTGACTGGTTCGGTCACTTGTTTGAGGGAAGGGGCTCCGTTTTATCA 125
||| .|||.|..||.|.| |..|||||.||||.|.|.|||||||.||
RBAM_023040__ 147 GAC-GGACGGAATCCGCC----GGCTGAGGCAAGGTGATGCGTTTTACCA 191
BSNT_03685___ 126 AGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTATT 175
|||.||..||....||||.|||||.||.||||||||...|||.||.||||
RBAM_023040__ 192 AGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTATT 241
BSNT_03685___ 176 TTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAG 225
|.|||||.|.|||.||.|||.||||.|...|.||||..||.|||||.||.
RBAM_023040__ 242 TCGCTGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAA 291
BSNT_03685___ 226 CTGCTGGAAC-GAAAAATTGCACAGGCAGAC----CAGCTGAAAAGTGTG 270
.|..| || ||.||| ||.||.|||||| ||..|.||||...||
RBAM_023040__ 292 TTATT---ACAGAGAAA--GCTCATGCAGACGGATCAAATCAAAAAAATG 336
BSNT_03685___ 271 CTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATAT 320
||.||.||||||.|.||..|.||.|.|.|.|||..|||||||||||||||
RBAM_023040__ 337 CTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATAT 386
BSNT_03685___ 321 GTT--ACAGTCCATCATCATTCCTCAGTTTTCCGGTATCTATCAATCGAT 368
..| |.||| .|.||.|||||.||||||.|.||.||.||||||||.||
RBAM_023040__ 387 CCTGCAAAGT--TTAATTATTCCGCAGTTTGCTGGGATTTATCAATCAAT 434
BSNT_03685___ 369 GAATATGGAAACCTCACGTTCAACCGATATGCTT-----TTTGCTTTTTT 413
|||||||.|.||.||..||.|.|| ||||| |||||.|||||
RBAM_023040__ 435 GAATATGAATACTTCCGGTGCGAC-----TGCTTTCATCTTTGCGTTTTT 479
BSNT_03685___ 414 TCAGCATATTGAT------------CTTGTGAT--------CATTTTGCT 443
||.||||.||.|| ||.|.|.| |.||.||||
RBAM_023040__ 480 TCGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCT 529
BSNT_03685___ 444 TGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGG--CTTGTGTTTAA 491
|||| |||.||| || |||| |||.|| |||
RBAM_023040__ 530 TGTT-TTTGTAC-----GT--------------TTGGTTCTTATG--TAA 557
BSNT_03685___ 492 GAAAAAATCACCTGCCCGGC------AAATGCTGATT----TG------- 524
.||||||| |||.|| ||||||||||| ||
RBAM_023040__ 558 AAAAAAAT------CCCCGCAAGATAAAATGCTGATTGTTGTGAAAATAC 601
BSNT_03685___ 525 ---TATCAGGATTCCTTTGGTTGGAAAGC-----TTGTAAAGCTGTTTAA 566
|||.|||| ||||| || ||.|||||
RBAM_023040__ 602 CACTATTAGGA-------------AAAGCGGCCGTT------CTTTTTAA 632
BSNT_03685___ 567 CAGCTACTTTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCT 616
||||||||||||.|||||.|||||.|||||.|||.|.|||||.|||||.|
RBAM_023040__ 633 CAGCTACTTTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTAT 682
BSNT_03685___ 617 CAATTTATGACAGCCTTAA-TGCATTTAAACATCAAACGTTTCTCCCTTT 665
|.||.|||||||| ||||| .||.||||||.|.|||.|.|||||.|||||
RBAM_023040__ 683 CTATCTATGACAG-CTTAACAGCTTTTAAAGAACAATCTTTTCTGCCTTT 731
BSNT_03685___ 666 CTACCGCTGCGAGGCTGAACAA---------TTGATTGAACGGCTAAAAG 706
.||.|| ||||.|| .|.|||..|||.||.||||
RBAM_023040__ 732 TTATCG---------TGAAGAAGCAGAGATGCTCATTACACGTCTGAAAG 772
BSNT_03685___ 707 CCGGTGAGTCAATTGAATCCGCTATTTGTGGAAGC--CCTTTTTATGAAA 754
||||.||..|.||.|||||||||.|||..|| || ||.|.||||||||
RBAM_023040__ 773 CCGGAGAAACCATAGAATCCGCTCTTTCCGG--GCATCCGTGTTATGAAA 820
BSNT_03685___ 755 ------------CTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGC 792
||| .||||| ..|||||.|||...|.|
RBAM_023040__ 821 AAGACCTTGCGGCTG---------CAGTCA---GCCACGGACAGGCAAAC 858
BSNT_03685___ 793 GGCC-GATTGGATCGGGAGCTTTTCACATACAGCCAATTCATATTACAGC 841
|||| |.|| .|.||.||.||||..||.||||||||.||.||..|..|||
RBAM_023040__ 859 GGCCTGCTT-CACCGCGAACTTTATACGTACAGCCAGTTTATGATGGAGC 907
BSNT_03685___ 842 GGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATT 891
|.||.|||||.||.|||...||.|..||.|||||.||.|||||..|.|||
RBAM_023040__ 908 GTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATT 957
BSNT_03685___ 892 TATGGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGT 941
||.||..||||.||.|..|||||.|||.||||.||..|.||.|||||..|
RBAM_023040__ 958 TACGGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGAT 1007
BSNT_03685___ 942 GCCTATGTATCAGATGATGAATCAAATGTGA 972
|||.|||||.|||||||||||.|||||||.|
RBAM_023040__ 1008 GCCGATGTACCAGATGATGAACCAAATGTAA 1038
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