Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03688 and RBAM_023050
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:58
# Commandline: needle
# -asequence dna-align/BSNT_03688___comGA.1.9828.seq
# -bsequence dna-align/RBAM_023050___comGA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03688___comGA-RBAM_023050___comGA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03688___comGA-RBAM_023050___comGA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03688___comGA
# 2: RBAM_023050___comGA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1120
# Identity: 799/1120 (71.3%)
# Similarity: 799/1120 (71.3%)
# Gaps: 98/1120 ( 8.8%)
# Score: 2840.5
#
#
#=======================================
BSNT_03688___ 1 ----------TTGGATTCAATAGAAAAGGTA-AGCAAAAACTTGATTGAA 39
||| |||..|| ||||..|||.|.||..|.
RBAM_023050__ 1 GTGAAAAATATTG-----------AAACATACAGCAGGAACATCATAAAC 39
BSNT_03688___ 40 GAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCCGAGGGAGCG 89
||.||.|||....|||.||||||.|||||.||||||||||||||.||..|
RBAM_023050__ 40 GAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCCGAGAGAAAG 89
BSNT_03688___ 90 GGACGCTATCATTCATTTTCGGGTCGATCATGC-CTTGCTGAAAAAAAGG 138
|||.|||.|||||||||||||..|||..||||| |||| ||||||||||.
RBAM_023050__ 90 GGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTG-TGAAAAAAAGA 138
BSNT_03688___ 139 GACATGAAAAAAGAAGAGTGCGTAAGGCTGATTTCACATTTTAAATTTCT 188
|.|.|.||||||||.||.|||||||||||.|||||.||||||||.|||.|
RBAM_023050__ 139 GTCTTAAAAAAAGAGGAATGCGTAAGGCTAATTTCTCATTTTAAGTTTTT 188
BSNT_03688___ 189 TTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTT------ 232
.||.||.|||||||||||.|||||.||.||||||||||||||.|
RBAM_023050__ 189 ATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGT 238
BSNT_03688___ 233 ------CGCTTACGTTAAAGCTGAAAGAGGGAAA-TGTTCATTTAAGAAT 275
|||||.| ||.||||| .||||||||||||||
RBAM_023050__ 239 CTCTGCCGCTTCC-------------GACGGAAACCGTTCATTTAAGAAT 275
BSNT_03688___ 276 GTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGTGATGC 325
||||||..||||.|||||.|||||.|||||.||.||.|||||..|..|||
RBAM_023050__ 276 GTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCTTTTGC 325
BSNT_03688___ 326 CCCAATA-----CA-ATATCCCTTCGATTGATAAATTGTCGCTATTTCCG 369
| || || ||..|||.|| |.||||||.||||..||||||.|
RBAM_023050__ 326 C----TAAGCGGCAGATTCCCCCTC--TGGATAAACTGTCCTTATTTCGG 369
BSNT_03688___ 370 AAGACAGGAGCCACATTACTCTCGTTTTTAAAACATTCCCATGGCATGCT 419
..|.|.||.|||.||.||.|.||.|||.|.||.|||||.||.|||.||||
RBAM_023050__ 370 GGGGCGGGCGCCGCACTATTGTCCTTTCTGAAGCATTCGCACGGCCTGCT 419
BSNT_03688___ 420 CATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTC 469
..|.||||||||.||.||.||.||.||.||.||.|||||.||.|||||.|
RBAM_023050__ 420 TCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGC 469
BSNT_03688___ 470 TCGTTCAA-TATGCAAAAAAACACTTTAATCGAAATATTGTCACATTAGA 518
|.| |||| ||||||||||..||.||.||.||...|||||||||..|.||
RBAM_023050__ 470 TTG-TCAACTATGCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGA 518
BSNT_03688___ 519 GGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCAGGTGAATG 568
.|||||.||.||||||||.||.||.|||||..|.||.|||||||||||||
RBAM_023050__ 519 AGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCAGGTGAATG 568
BSNT_03688___ 569 AAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCAT 618
||||||||||.||.||.||||||||.|||.|.|||||.|||.|..|.|||
RBAM_023050__ 569 AAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTCTAAGACAT 618
BSNT_03688___ 619 GACCCCGATATGATTATTTTAGGTGAGATCAGAGACGCGGAAACAGCTGA 668
||.|||||||||||.||.|||||.||.||||||||.||.||.||.|||||
RBAM_023050__ 619 GATCCCGATATGATCATCTTAGGGGAAATCAGAGATGCCGAGACGGCTGA 668
BSNT_03688___ 669 AATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTC 718
|||.||.||.||.||.||.|||||||||||.||.||.||..|.|||||.|
RBAM_023050__ 669 AATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGC 718
BSNT_03688___ 719 ATACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATC 768
||||.|||||.||.||||||||.||.|||||.|||||.||.|||||..|.
RBAM_023050__ 719 ATACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTG 768
BSNT_03688___ 769 AATATGAATGAAATTGAACAGACTGTCATTGCAATAGCGGCTCAGCGCTT 818
||.||||..|||||||||||.||.||||||||.||.||.||||||||..|
RBAM_023050__ 769 AACATGACAGAAATTGAACAAACCGTCATTGCTATTGCCGCTCAGCGTCT 818
BSNT_03688___ 819 GGTTGATTTGGCTTGCCCGTTTTG------TGAAAACGGATGTTCATCAG 862
|||||||||..|.||.|||||.|| .|||||| ||| ||.|
RBAM_023050__ 819 GGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAAC---TGT---TCCG 862
BSNT_03688___ 863 TGTATTGTC---------GCCAGTCACGAAATACCAGGAGAGCTAGCGTT 903
||||.||.| |.|||.|||| || |.||..||.||
RBAM_023050__ 863 TGTACTGCCGGATGTACAGGCAGACACG-----CC----GTGCGGGCATT 903
BSNT_03688___ 904 TATGAGCTTCTTTACGGGAAAAATCTTCA-GCAATGTATCCAGGAGGCAA 952
|||||.||.||.||||||||||| |.||| .|||||..|.|||||.||||
RBAM_023050__ 904 TATGAACTGCTCTACGGGAAAAA-CCTCACCCAATGCTTTCAGGAAGCAA 952
BSNT_03688___ 953 AAGGAAATCATGCAAATTACCAATATCAAACGCTTCGTCA-AATTATCAG 1001
|.|||.|.||.||.||||..||||||||.|||||.|| || ..|.|||||
RBAM_023050__ 953 AGGGAGAGCACGCCAATTTTCAATATCAGACGCTCCG-CAGGCTGATCAG 1001
BSNT_03688___ 1002 GAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTATGACCGGTGGG 1051
.||||||||.||||||||||||.|.|||||..||||.||.||.|||||||
RBAM_023050__ 1002 AAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTACGATCGGTGGG 1051
BSNT_03688___ 1052 TTTATCATGAAAAAGATTAG 1071
|.|||||||||...|||||.
RBAM_023050__ 1052 TGTATCATGAAGCGGATTAA 1071
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