Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03701 and RBAM_023120

See Amino acid alignment / Visit BSNT_03701 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:59
# Commandline: needle
#    -asequence dna-align/BSNT_03701___yqgX.1.9828.seq
#    -bsequence dna-align/RBAM_023120___yqgX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03701___yqgX-RBAM_023120___yqgX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03701___yqgX-RBAM_023120___yqgX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03701___yqgX
# 2: RBAM_023120___yqgX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 646
# Identity:     491/646 (76.0%)
# Similarity:   491/646 (76.0%)
# Gaps:          17/646 ( 2.6%)
# Score: 1799.5
# 
#
#=======================================

BSNT_03701___      1 GTGAAATGGAGACGAATGCCAGTAGGGCCGATTCAAGCGAACGCATATTT     50
                     ||||||||||||||||||||.|..||.||||||||.||.|||||.|||||
RBAM_023120__      1 GTGAAATGGAGACGAATGCCGGCCGGTCCGATTCAGGCAAACGCGTATTT     50

BSNT_03701___     51 TCTCATCAGTGATGATCAATGCCTG----ATTTTTGATCCGGGCGGCGA-     95
                     |||..|||||||.|||||.| ||||    |||||||||||||||||.|| 
RBAM_023120__     51 TCTTGTCAGTGAGGATCAGT-CCTGTCTTATTTTTGATCCGGGCGGGGAA     99

BSNT_03701___     96 -GGGACATAAAATCAATCAA-TACATAAAAGAAAAAGGGCTGACGCCTTT    143
                      .||||  |||||||| ||| ||||||||||||||....||||.|||..|
RBAM_023120__    100 GCGGAC--AAAATCAA-CAATTACATAAAAGAAAACAATCTGAAGCCGCT    146

BSNT_03701___    144 AGCCATTTTGCTTACACATGCCCATTTTGACCATATTGGGGCGCTTGATG    193
                     .|||||.||.||.||.||.|||||||||||||||||.||.||||||||.|
RBAM_023120__    147 GGCCATCTTACTGACGCACGCCCATTTTGACCATATCGGCGCGCTTGACG    196

BSNT_03701___    194 AAGTGAGAGAAAAATGGGATATCCCTGTTTACCTGCATCAAAATGAAAAA    243
                     ||||.|||||.|.|||||||.|.||.||.||.||.||..||||||||.||
RBAM_023120__    197 AAGTAAGAGACAGATGGGATGTTCCCGTATATCTTCACAAAAATGAAGAA    246

BSNT_03701___    244 AATTGGCTTACGGACGCTTCTTTAAACGGCTCCGGCATGCTGCGAGGGAT    293
                     ||.|||||...||||.||||.||||||||.||.|||||..||||.||.||
RBAM_023120__    247 AAGTGGCTGGAGGACTCTTCCTTAAACGGATCGGGCATATTGCGGGGCAT    296

BSNT_03701___    294 AGAAGTCACAGCTAAGCCTGCAGATCATCTAATTGAAGGCGACGGTGAGT    343
                     .|..||.||.||...|||.||.||.|..||.||.|||||||||||....|
RBAM_023120__    297 CGCCGTAACGGCACGGCCCGCCGAACGGCTCATCGAAGGCGACGGCATAT    346

BSNT_03701___    344 TGAATATCGGGCCGTTTCATTTGGAAACATTATTTACGCCGGGACATTCA    393
                     ||.|.||||||||.||.||||||||.|||||.||||||||||||||||||
RBAM_023120__    347 TGGACATCGGGCCTTTCCATTTGGAGACATTGTTTACGCCGGGACATTCA    396

BSNT_03701___    394 CCAGGCAGTGTATCTTACTACGTGAAAGATGCAGACTTGGTTATCTCCGG    443
                     ||.||.||.||.|||||.||.|||||.||.||.||..||||.||.||.||
RBAM_023120__    397 CCGGGAAGCGTTTCTTATTATGTGAAGGACGCGGATCTGGTGATTTCAGG    446

BSNT_03701___    444 AGATGTCTTGTTCCAAGGCGGTATAGGACGTACGGATTTAATAGGCGGCG    493
                     .|||||..|.||.||.||.||.||.||.||.||.||||||...|||||..
RBAM_023120__    447 TGATGTGCTCTTTCAGGGAGGCATCGGCCGCACTGATTTACACGGCGGAA    496

BSNT_03701___    494 ATCAAGAGACG--CTGC-TGACGTCCATTCATGAAAAACTGCTTACGCTT    540
                     .|||  .||||  .||| ||| .|||||||||.||||||||||.||||||
RBAM_023120__    497 GTCA--GGACGTATTGCTTGA-TTCCATTCATCAAAAACTGCTCACGCTT    543

BSNT_03701___    541 CCGGAACACACGCTGGTGTTAAGCGGCCATGGACCTGAAACAGACGTACT    590
                     ||.|.|.|.||.||.|||||||||||.||.||.||.|||||.||..|.|.
RBAM_023120__    544 CCCGGATATACACTTGTGTTAAGCGGGCACGGGCCGGAAACGGATATTCA    593

BSNT_03701___    591 GACTGAGCAGGATCAAAATCCGTTTTTAAATGGGTTTTCATTGTAA    636
                     |||.||||||||.|.|||.||||||.|.|||||.||||||.|||||
RBAM_023120__    594 GACAGAGCAGGAGCGAAACCCGTTTATCAATGGTTTTTCACTGTAA    639


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