Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03704 and RBAM_023150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:59
# Commandline: needle
# -asequence dna-align/BSNT_03704___yqgU.1.9828.seq
# -bsequence dna-align/RBAM_023150___yqgU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03704___yqgU-RBAM_023150___yqgU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03704___yqgU-RBAM_023150___yqgU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03704___yqgU
# 2: RBAM_023150___yqgU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1193
# Identity: 705/1193 (59.1%)
# Similarity: 705/1193 (59.1%)
# Gaps: 271/1193 (22.7%)
# Score: 1834.5
#
#
#=======================================
BSNT_03704___ 1 ---------ATGCTGATGAGATCAGTTTGTTT-TATTCTGCTGGCGGTA- 39
|.||||.|||||| |.||.|||| |.||||||||.|.|.|
RBAM_023150__ 1 ATGGAGGGAAGGCTGGTGAGAT-ACTTGGTTTGTGTTCTGCTGTCAGCAC 49
BSNT_03704___ 40 ---TTGCTGTTTAGTTTATCGGCATGCGAACCATCTCATCAGCAGCAA-A 85
|| |||| |||||.||||.||.||||||||||||||||||||| |
RBAM_023150__ 50 TCGTT-CTGT---GTTTAGCGGCCTGTGAACCATCTCATCAGCAGCAAGA 95
BSNT_03704___ 86 AACAGGCATCGGCGGCAAA------AGATGAGAAAAAAGACATCATACCG 129
.||||||.| ..||||||| |||..||||| |||.|.|||
RBAM_023150__ 96 CACAGGCGT-TTCGGCAAAATCGGCAGAACAGAAA------ATCGTTCCG 138
BSNT_03704___ 130 CTTTCCTC-GGAAAAAGCGGATGGGG------CGGAAGGCTGGCTGAATA 172
||| |.||||| |||.|.|| |||||||.||||||.|||
RBAM_023150__ 139 -----CTCAGTAAAAA--GGAAGCGGAGAAAACGGAAGGATGGCTGGATA 181
BSNT_03704___ 173 ACAGCACAATATTATATACTGCGTCTAAT---CCGACGAAAACAGAGCTT 219
||||.||.||..|.|||||.||...|.|| |.||.||||
RBAM_023150__ 182 ACAGAACGATCCTGTATACAGCACATCATCAGCTGATGAAA--------- 222
BSNT_03704___ 220 TTTGCGTACCGCATCTTTACA--GGCAAAGCGAAAAAGCTCTATCAAACG 267
|.|| ||||||.|| ||.|||.|..||..|||||||.||||
RBAM_023150__ 223 TATG--------ATCTTTTCAGCGGAAAATCCGAACGGCTCTATGAAAC- 263
BSNT_03704___ 268 GATGGTCAA-ATCGTTGATGTTCAAATCAATGC--GAGGGAGCAGATGAT 314
.|.||.||| ||.||..||||..|.|||| || ||...|.|||.||||
RBAM_023150__ 264 AAAGGGCAATATTGTCAATGTAAAGATCA--GCCGGAAAAAACAGCTGAT 311
BSNT_03704___ 315 TCTGCTGCAAATCACACATAGCCAAAAGAC-AGCAGTGG----------- 352
||| |||| ||...||| |||||.||
RBAM_023150__ 312 TCT-------------CATA--CAGGTGACAAGCAGCGGTCAGACTGAGC 346
BSNT_03704___ 353 TTTTGCTTAATGCAGAAGGAG------AGACGCTTTACGAAAAAG--ATT 394
||.||||| |||.|.|||.|| ||| |||||..|.|||| .||
RBAM_023150__ 347 TTGTGCTT-ATGAACAAGCAGGGGAAAAGA--CTTTATCACAAAGCCTTT 393
BSNT_03704___ 395 ACGAAACGTATGAGCTTGAGGCTGCTTGGAATCAGTATGATCCTTATCAA 444
| |..|.||||||||.|||.|.||||||||||.||||||.||.||||||
RBAM_023150__ 394 A--ACTCTTATGAGCTGGAGACGGCTTGGAATCCGTATGACCCGTATCAA 441
BSNT_03704___ 445 ATGATGGTGACGGAATTCAATGAAAACTGGGATTT------CCATAC--- 485
||||||.|.||.|..||.|.|||||..|||||.|| |.||||
RBAM_023150__ 442 ATGATGATTACCGTTTTTACTGAAACATGGGACTTCACAGCCTATACGGC 491
BSNT_03704___ 486 --ATAT---CAGGTGAATGCTAAAAAAGACGAATCTTTCTTAAGCCCAGT 530
|||| ||...|.||..|||||||| ||.||.||
RBAM_023150__ 492 CGATATGAACAACGGCATTTTAAAAAAG--------------AGTCCCGT 527
BSNT_03704___ 531 ACAGGTTCCGTTCATTCATTGGACATCCAAAAATACATTTGATTATGTAA 580
.||||..||.||..|.||||||||.||||...||..|||..|.|||.|.|
RBAM_023150__ 528 TCAGGCCCCTTTTGTCCATTGGACCTCCACTGATGAATTCCAATATATCA 577
BSNT_03704___ 581 AAGAGGGAAGAGACGATAAAACAGGG-CCTTTATATACGTTCGA--TACA 627
|..|.|||| |.|||....||.|||| |||||||||.|.|..|| |.||
RBAM_023150__ 578 AGCAAGGAA-AAACGGAGGAAGAGGGTCCTTTATATTCTTATGACTTGCA 626
BSNT_03704___ 628 GCTTCTAAGACGGAACAGAA--------GCTTGAGGATGACGT--TCTAT 667
| .|.|| ||.|||| |||| .||.|||| |||..
RBAM_023150__ 627 G--ACAAA-----AAAAGAAAAAAGAGTGCTT---CATCACGTCATCTGG 666
BSNT_03704___ 668 TCTTCGATTCTTTCCATCAAATGAGTTTTACTGTCA------------AA 705
.| ||||||...||.....||||...||.|.|||| ||
RBAM_023150__ 667 GC--CGATTCCCGCCCGGGCATGACGATTGCCGTCAGACAAACGGATCAA 714
BSNT_03704___ 706 TCAGCTTCCGGA-GGAAAAGG-GACGTATCAGTTT--AAAACGCCGCAAT 751
| |||| |||.|.|| || || ||..||| |||| ||||..||
RBAM_023150__ 715 T-------CGGACGGAGACGGCGA-GT-TCCTTTTCCAAAA-GCCGGCAT 754
BSNT_03704___ 752 CAACAT----CACCTGTTACAGCGAAATGGCCGCTCCAAGCGAAATATAC 797
| |.| ||||..|| .||.|||||||..||.||| |
RBAM_023150__ 755 C--CGTGACGCACCGCTT-----------TCCTCTCCAAGAAAAGTAT-C 790
BSNT_03704___ 798 AAA--TTTGGCTCCAATGGAGTATGACTATGAT--GAAGCAGGAGGCCTG 843
|.| ||| ||.||.|||||||||||.||.||| ||..||..|| |.|
RBAM_023150__ 791 AGAGCTTT-GCGCCGATGGAGTATGATTACGATCAGACACACAAG--CGG 837
BSNT_03704___ 844 TTTTATACATTCAAAC---AAAGCGGCGATGCATATAAGCTCG--CAGCA 888
|||||.|.||||||.| ||.||.|| .|.||.||.|| | ||||.
RBAM_023150__ 838 TTTTACATATTCAAGCCTGAAGGCCGC---TCTTACAATCT-GATCAGCT 883
BSNT_03704___ 889 ATCAATGTAG-----CATCGGGAG-AGAC--------AAAAGATCTTGTG 924
.|.|.| ||| .|.|||||| .||| ||||.|
RBAM_023150__ 884 TTGACT-TAGGAGACGAACGGGAGCGGACGGTGCTCAAAAACA------- 925
BSNT_03704___ 925 TCTCTGCGGGAAATGGAGCCGATTCAAATATCTCCGAACGGGAAATATGC 974
.||||||||||||||||||.||.||||||||||||.||||.||
RBAM_023150__ 926 -------CGGAAATGGAGCCGATTCAGATCTCTCCGAACGGGGAATACGC 968
BSNT_03704___ 975 GTTATACGGCTTTCATTTTGAGCAAATTATTTTATTGAAATCA--CATGA 1022
.||||||||||||...|.|||.|...|.||||.|.|||||.|| |||||
RBAM_023150__ 969 TTTATACGGCTTTACGTATGACCGTCTGATTTCACTGAAAACAGGCATGA 1018
BSNT_03704___ 1023 AACGAAGCAACTCAT---CATTGATCAAAAGGAGATGGAATAA 1062
.| |||.||| |||| .|.||| ||||||||.|.||
RBAM_023150__ 1019 CA-GAACCAA-TCATAACAAATGA--AAAAGGAGTTTGA---- 1053
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