Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01659 and RBAM_023190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:20
# Commandline: needle
# -asequence dna-align/BSNT_01659___nhaC.1.9828.seq
# -bsequence dna-align/RBAM_023190___nhaC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01659___nhaC-RBAM_023190___nhaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01659___nhaC-RBAM_023190___nhaC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01659___nhaC
# 2: RBAM_023190___nhaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1390
# Identity: 1030/1390 (74.1%)
# Similarity: 1030/1390 (74.1%)
# Gaps: 53/1390 ( 3.8%)
# Score: 3696.0
#
#
#=======================================
BSNT_01659___ 1 TTGGATTCTCAAAAAAAGCTGACGTT--TCCGTTAGCCGTCGGTTTATTT 48
|||.|.....||||||.||||||||| || |.||||.||.||||||||
RBAM_023190__ 1 TTGAAACAAGAAAAAAGGCTGACGTTCATC--TCAGCCATCAGTTTATTT 48
BSNT_01659___ 49 ATATTGATGTTATGCATTATTATTTCTTGCTTATTCTTGCTTCATGTAGA 98
.|.|||||||||..|.|.||||||||.|||.|.||.||..|||||..|||
RBAM_023190__ 49 GTCTTGATGTTAGCCGTCATTATTTCCTGCCTGTTTTTCTTTCATACAGA 98
BSNT_01659___ 99 ACCTCATATCCCGCTGTTTTTAAGTGTT--GTCATGCTT-----TCAGCA 141
.||.|||||.||||||||.|| || |||||..|| ||.|
RBAM_023190__ 99 GCCGCATATGCCGCTGTTCTT-----TTGCGTCATTATTCTGTCTCTG-- 141
BSNT_01659___ 142 GCAGCTTTATGGTTTGGATTTTCCTGGAAGAGTATTGAAAAAGGGATTGT 191
||||.|||.|||.|.||.||.||.|||.|.|||.||||||||||.|||||
RBAM_023190__ 142 GCAGGTTTGTGGCTCGGTTTCTCGTGGGACAGTCTTGAAAAAGGAATTGT 191
BSNT_01659___ 192 -AGACGGGATCAAAAACGGCGTACAGCCAATTATTGTTCTAGCGCTGATC 240
|| |||..|.||||||||.||.|||||.|||||.||.||.||..|||||
RBAM_023190__ 192 CAG-CGGATTGAAAAACGGTGTGCAGCCGATTATCGTGCTGGCTTTGATC 240
BSNT_01659___ 241 GGCATCTTAATCGGCGCCTGGATGTACAGCGGCGCAATACCGACTGTGAC 290
||..|..|.||||||||||||||||||||||||||.||.||.||.||.||
RBAM_023190__ 241 GGTGTGCTGATCGGCGCCTGGATGTACAGCGGCGCCATTCCCACCGTCAC 290
BSNT_01659___ 291 AGTTTATGCCCTATCCTTTATTGAACCAAGCCACCTTCTGTTGACTGCTT 340
.|||||.||..|.||..||||..|.||.||.||.||.||.|||||.||.|
RBAM_023190__ 291 CGTTTACGCTTTGTCAATTATACAGCCGAGTCAGCTGCTTTTGACCGCAT 340
BSNT_01659___ 341 TGTTTTCATGTATGATCATCAGCACACTTGTTGGCTCAAGCCTGACAACT 390
|.|||||.||.|||||.||||||||.|||||.||||||||.|||||||||
RBAM_023190__ 341 TATTTTCCTGCATGATTATCAGCACGCTTGTCGGCTCAAGTCTGACAACT 390
BSNT_01659___ 391 GTAAGCACAATCGGGGTAGCGCTGATCGGCGTATCGAGCGCGGCTAGCGT 440
||.||.||||||||.||.||||||.|.||.|||.|.||||||||..|.||
RBAM_023190__ 391 GTCAGTACAATCGGCGTCGCGCTGTTAGGGGTAGCAAGCGCGGCGGGAGT 440
BSNT_01659___ 441 TCCGCTTGAATGGACAGCAGGCGCAGTCATATGCGGCGCTTGTTTTGGGG 490
||||||.||||||||.||.||.||||||||.|||||.||||||||.||.|
RBAM_023190__ 441 TCCGCTCGAATGGACGGCGGGAGCAGTCATTTGCGGGGCTTGTTTCGGTG 490
BSNT_01659___ 491 ATAAAATGTCGCCGATGTCGGACACAACCAACTTTGCAGCCGGAATAGGC 540
||||||||||.||||||||.|||||.||.||.|||||.||||||||.|||
RBAM_023190__ 491 ATAAAATGTCACCGATGTCCGACACGACGAATTTTGCCGCCGGAATCGGC 540
BSNT_01659___ 541 GAAATACCGATCTTTGAACACATTCGCCATATGATGGGCACAACCATTCC 590
|||||.|||||.|||.|.||.||||||||||||||||||||.|||.||||
RBAM_023190__ 541 GAAATTCCGATTTTTAAGCATATTCGCCATATGATGGGCACTACCGTTCC 590
BSNT_01659___ 591 AGCTTTGCTCATCACTGTCGTTCTGTTTTACTTTCTCGGTTCATCAGTGT 640
.||..||||.|||||..|.|||||.|||||..|||||||||||||.||.|
RBAM_023190__ 591 GGCACTGCTGATCACGATTGTTCTTTTTTATATTCTCGGTTCATCGGTTT 640
BSNT_01659___ 641 CAGCGGACGCTGCTTCAACCGAGAATATTCA-GCAGGTCATAACCGGAAT 689
||....|.||.||||||||..|.||||||.| || ||||||..|||||||
RBAM_023190__ 641 CAATAAATGCCGCTTCAACGCAAAATATTGATGC-GGTCATTTCCGGAAT 689
BSNT_01659___ 690 AAAAGATGCCGCAAACGTGACACCGTGGGCCCTTCTTTCTCCGCTCTTAG 739
||||||.||||...||||.||.||.|||.|.||||||||.||.||.||.|
RBAM_023190__ 690 AAAAGAGGCCGTGCACGTTACGCCTTGGTCGCTTCTTTCACCTCTGTTGG 739
BSNT_01659___ 740 ---TCGTTTT-GCTGGCAATAAAACGGGTATCAGTAATCCCCGTTCTGAC 785
||.|||| |||| |.|.||||||.||.||.||.||.||.||.||
RBAM_023190__ 740 TGATCATTTTAGCTG----TGAGACGGGTTTCCGTGATTCCGGTGCTTAC 785
BSNT_01659___ 786 TGCCGGAATTATTTCCTCGGGAATTTTGACTGCTATTTTTGTACCCGACA 835
.|||||.|||||||||.|.||..||.||||||||.|||||.|.||.||||
RBAM_023190__ 786 CGCCGGTATTATTTCCGCAGGGCTTCTGACTGCTGTTTTTATTCCTGACA 835
BSNT_01659___ 836 GCAGCCTGCAGGCGTTTATGACAGCTTTACAAAATGGCACAACTTTCGAA 885
|||||.|.||.|..|||||..|.||..|.||||..||.||..|.||..||
RBAM_023190__ 836 GCAGCATTCAAGGATTTATATCCGCCCTGCAAAGCGGGACGGCGTTTAAA 885
BSNT_01659___ 886 ACTGACAATGAGGCAGCCGCTAAAATTATTAACAGAGGCGGACTGCAATC 935
||.|.|.|..||||.|..||.|..|||||.|||||||||||.||.|||||
RBAM_023190__ 886 ACCGGCGACCAGGCTGTGGCCAGCATTATCAACAGAGGCGGGCTCCAATC 935
BSNT_01659___ 936 CATGATGGGCTCTGTCTCTCTCATTATGATTGCTTTTGCACTCGGCGGAT 985
.||||||||.||.||||||||.||.|||||.||.|||||.||||||||..
RBAM_023190__ 936 GATGATGGGATCAGTCTCTCTGATCATGATCGCCTTTGCGCTCGGCGGCC 985
BSNT_01659___ 986 TGATGGAGAAAATCGGATTGATTTCTGCACTATTGGAAGGCGTCATGAAA 1035
|||||||.||||..||..||||..|.||.||..|..||||..|.||.|||
RBAM_023190__ 986 TGATGGAAAAAACGGGCCTGATCGCGGCGCTGCTTCAAGGATTGATAAAA 1035
BSNT_01659___ 1036 G----GCATCCGCTCAAAAGGCCGTCTTGTTGCA--GCAACTGTCTGCTC 1079
| ||||.|| |||||.||||||.| || ||.||.||||.|||
RBAM_023190__ 1036 GGCGTGCATACG----AAAGGACGTCTTAT--CATGGCGACCGTCTTCTC 1079
BSNT_01659___ 1080 AAGCATCGGCGTCAACTTGGCAACGGGCGAACAGTATTTATCGATATTAA 1129
|||.||.|||||.|||.|.||.||.||.||.||||||||.|||||.||||
RBAM_023190__ 1080 AAGTATAGGCGTAAACCTTGCGACAGGGGAGCAGTATTTGTCGATCTTAA 1129
BSNT_01659___ 1130 TACCGGGACAATCATTTAAATCTTTATATGACAAACGAAACATCCAGCGA 1179
|.|||||.|||||.|.||||.|||||||||||||.|..|.|||..||||.
RBAM_023190__ 1130 TTCCGGGTCAATCTTATAAAGCTTTATATGACAAGCTCAGCATTAAGCGG 1179
BSNT_01659___ 1180 AAATTTC----TGACAAGATCATTAGAGGACGGCGGAACATTAATTAACC 1225
| ||| || |..|.||..|.|||||||||||||||||.||.||||
RBAM_023190__ 1180 A---TTCACCTTG-CGCGGTCGCTTGAGGACGGCGGAACATTGATCAACC 1225
BSNT_01659___ 1226 CATTGATTCCTTGGGGCGTCAGCGGCGCATTTATGGCGAGCGCACTTGGT 1275
|..|||||||.|||||.||.||||||||.||||||||.||||||.|.||.
RBAM_023190__ 1226 CGCTGATTCCCTGGGGAGTAAGCGGCGCTTTTATGGCAAGCGCATTAGGG 1275
BSNT_01659___ 1276 GTTCCAGTCATAGACTACATCCCGTTTACGTTCTTCCTCTATATATCGCC 1325
|||.|.|||||.||||||.|.||||||||.||.|||||.||.||.||.||
RBAM_023190__ 1276 GTTTCCGTCATCGACTACCTGCCGTTTACCTTTTTCCTGTACATTTCTCC 1325
BSNT_01659___ 1326 AATGATCTCCATTTTGATTGGATTTGTTAAAAAA---TAA 1362
.||||||||.|||.||.|.||.||..|.|||||| |.|
RBAM_023190__ 1326 TATGATCTCAATTCTGCTCGGTTTCCTGAAAAAAAGCTGA 1365
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