Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03731 and RBAM_023290

See Amino acid alignment / Visit BSNT_03731 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_03731___pstS.1.9828.seq
#    -bsequence dna-align/RBAM_023290___pstS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03731___pstS-RBAM_023290___pstS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03731___pstS-RBAM_023290___pstS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03731___pstS
# 2: RBAM_023290___pstS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 911
# Identity:     726/911 (79.7%)
# Similarity:   726/911 (79.7%)
# Gaps:          16/911 ( 1.8%)
# Score: 2889.0
# 
#
#=======================================

BSNT_03731___      1 ATGAAAAAAAACAAATTGGTGCTTATGCTTCTGATGGCTGCATTTATGAT     50
                     ||||||||||||||||.|.||||||||||||||||||||||..|||||||
RBAM_023290__      1 ATGAAAAAAAACAAATGGATGCTTATGCTTCTGATGGCTGCTGTTATGAT     50

BSNT_03731___     51 GATTGCAGCTGCATGCGGAAATGCAGGAGAAAGTAAA-----AAATCGAA     95
                     ..||||.||.||||||||||||||     ||||.|||     ||..|..|
RBAM_023290__     51 TGTTGCTGCAGCATGCGGAAATGC-----AAAGGAAAGCGGCAAGACAGA     95

BSNT_03731___     96 TAGCGATTCTGCAA--AAGGAGAAGAAAAGGCATCAGGTTCTTTAACCAT    143
                     .||..|.|||||||  .||||.|  ||||.||||||||||||||||||||
RBAM_023290__     96 CAGTCAATCTGCAAGTGAGGATA--AAAAAGCATCAGGTTCTTTAACCAT    143

BSNT_03731___    144 TTCTGGTTCATCGGCAATGCAGCCACTAGTACTTGCAGCCGCGGAAAAAT    193
                     ||||||||||||.||.||||||||..|||||||.|||||.||||||||.|
RBAM_023290__    144 TTCTGGTTCATCAGCCATGCAGCCGTTAGTACTGGCAGCGGCGGAAAAGT    193

BSNT_03731___    194 TTATGGAAGAAAACCCTGATGCTGATATACAGGTACAAGCTGGCGGTTCT    243
                     ||||||||.||.|.||.|||||||||.|.|||||.|||||.||.|||||.
RBAM_023290__    194 TTATGGAAAAACATCCGGATGCTGATGTGCAGGTGCAAGCGGGAGGTTCA    243

BSNT_03731___    244 GGAACAGGGCTTTCTCAAGTCTCTGAAGGAGCTGTTCAGATCGGGAATTC    293
                     ||||||||.|||||.|||||.||||||||.||.||.||.|||||.||.||
RBAM_023290__    244 GGAACAGGTCTTTCGCAAGTGTCTGAAGGGGCAGTGCAAATCGGCAACTC    293

BSNT_03731___    294 AGACGTTTTTGCAGAAGAAAAAGAAGGCATCGATGCAAAAGCGCTTGTCG    343
                     |||.||.|||||.|||||||||||||||||.|||||||||||.||....|
RBAM_023290__    294 AGATGTCTTTGCTGAAGAAAAAGAAGGCATTGATGCAAAAGCCCTAAAAG    343

BSNT_03731___    344 ATCATCAAGTCGCTGTAGTTGGTATGGCAGCAGCTGTAAACCCTGATGCT    393
                     |.||.|.|||.||.|||||.|..|||||.||.||.||.|||||.|.|||.
RBAM_023290__    344 ACCACCGAGTAGCGGTAGTGGCGATGGCGGCTGCGGTCAACCCCGGTGCG    393

BSNT_03731___    394 GGTGTGAAGGATATTTCAAAAGATGAATTGAAAAAAATCTTCACTGGCAA    443
                     |||||.||||||||..|.|||.|..|..|||.|.|..||||.||.|||||
RBAM_023290__    394 GGTGTAAAGGATATAACCAAAAAACAGCTGACAGACGTCTTTACAGGCAA    443

BSNT_03731___    444 AATTAAAAACTGGAAAGAGCTCGGCGGCAAAGACCAAAAGATTACACTTG    493
                     |||||||||||||||||||||.|||||.|||||.|||||.||||||||||
RBAM_023290__    444 AATTAAAAACTGGAAAGAGCTTGGCGGTAAAGATCAAAAAATTACACTTG    493

BSNT_03731___    494 TAAACCGTCCTGATTCTTCTGGCACACGTGCTACATTTGTGAAATATGCG    543
                     |.||||||||||||||.||.||.|||||.|||||.||.||.|||||||||
RBAM_023290__    494 TGAACCGTCCTGATTCATCAGGAACACGCGCTACGTTCGTCAAATATGCG    543

BSNT_03731___    544 CTTGACGGAGAAGAACCTGCAGAAGGCATTACTGAAGATTCCTCCAACAC    593
                     ||||||||||.|||.||||||||.|||||.||.||.|||||||||||.||
RBAM_023290__    544 CTTGACGGAGCAGAGCCTGCAGAGGGCATCACAGAGGATTCCTCCAATAC    593

BSNT_03731___    594 GGTGAAAAAAATCATTGCTGATACTCCGGGAGCGATTGGATATCTTGCAT    643
                     .||.||||||||||||||.||.||.||||||||.||.||.|||||.||||
RBAM_023290__    594 AGTCAAAAAAATCATTGCGGAAACGCCGGGAGCAATCGGTTATCTGGCAT    643

BSNT_03731___    644 TCTCATATTTAACAGATGACAAAGTAACTGCTCTATCTATTGACGGTGTT    693
                     ||||.|||.|||..||||||||||||||..||.||||.||.|..||..|.
RBAM_023290__    644 TCTCTTATATAAACGATGACAAAGTAACGCCTTTATCGATCGGAGGCATC    693

BSNT_03731___    694 AAACCTGAAGCGAAAAATGTAGCAACTGGCGAGTATCCGATCTGGGCTTA    743
                     |||||.||||.||||||.||.|..||.||||||||||||||.||||||||
RBAM_023290__    694 AAACCGGAAGAGAAAAACGTCGTCACAGGCGAGTATCCGATTTGGGCTTA    743

BSNT_03731___    744 TCAGCATTCTTATACAAAAGGTGAAGCGACAGG-TTTAGCTAAAGAATTT    792
                     ..||||.||||||||.||||||||||||.|||| .||| |.|||...|||
RBAM_023290__    744 CGAGCACTCTTATACGAAAGGTGAAGCGTCAGGCCTTA-CAAAAACGTTT    792

BSNT_03731___    793 CTTGATTATCTAAAGAGTGAAGACATTCAAAAAAGCATTGTTACTGACCA    842
                     |||||.|||.|.||.||.||.||..|.||.|||||.||.||.|..||.||
RBAM_023290__    793 CTTGACTATATGAACAGCGATGAAGTACAGAAAAGTATCGTAAAAGATCA    842

BSNT_03731___    843 AGGCTACATTCCGGTTACTGATATGAAAGTGACACGCGATGCCAACGGGA    892
                     |||||||||||||.|..|||||||||||||.|||||.||.||.|||||.|
RBAM_023290__    843 AGGCTACATTCCGATCTCTGATATGAAAGTCACACGTGACGCAAACGGCA    892

BSNT_03731___    893 AGCAAAGCTGA    903
                     |||||||||||
RBAM_023290__    893 AGCAAAGCTGA    903


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