Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03734 and RBAM_023340

See Amino acid alignment / Visit BSNT_03734 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:01
# Commandline: needle
#    -asequence dna-align/BSNT_03734___sodA.1.9828.seq
#    -bsequence dna-align/RBAM_023340___sodA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03734___sodA-RBAM_023340___sodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03734___sodA-RBAM_023340___sodA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03734___sodA
# 2: RBAM_023340___sodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 614
# Identity:     520/614 (84.7%)
# Similarity:   520/614 (84.7%)
# Gaps:          13/614 ( 2.1%)
# Score: 2212.5
# 
#
#=======================================

BSNT_03734___      1 ATGGCTTACGAACTTCCAGAATTACCTTATGCGTACGATGCTTTAGAACC     50
                     |||||||||.|||||||||||||.|||||.||.||.||||||||||||||
RBAM_023340__      1 ATGGCTTACAAACTTCCAGAATTGCCTTACGCTTATGATGCTTTAGAACC     50

BSNT_03734___     51 GCATATCGACAAGGAAACTATGACTATTCACCATACGAAACACCACAACA    100
                     .||||||||.||||||||.|||||.||||||||||||||.|||||.||||
RBAM_023340__     51 TCATATCGATAAGGAAACGATGACGATTCACCATACGAAGCACCATAACA    100

BSNT_03734___    101 CATACGTGACAAATTTAAACAAAGCGGTTGAAGGAAACACTGCTCTTGCC    150
                     |||||||||||||..|.|||||||||.|.||||||   .|.||.|||||.
RBAM_023340__    101 CATACGTGACAAACCTCAACAAAGCGATCGAAGGA---TCAGCGCTTGCA    147

BSNT_03734___    151 AACAAATCAGTTGAAGAGCTTGTTGCAGATCTTG-ATTCTGTTCCTGAAA    199
                     .|.|||||.||.||.|||||||||||.||| ||| |..|.||.||.||..
RBAM_023340__    148 GAGAAATCTGTAGATGAGCTTGTTGCTGAT-TTGAACGCAGTGCCGGAGG    196

BSNT_03734___    200 ACATCCGCACTGCGGTCCGCAACAACGGCGGCGGACACGCGAACCACAAA    249
                     ||||||||||.||.|||||||||||.|||||||||||.||.||||||...
RBAM_023340__    197 ACATCCGCACGGCAGTCCGCAACAATGGCGGCGGACATGCAAACCACTCT    246

BSNT_03734___    250 TTATTCTGGACACTTTTATCTCCAAACGGCGGAGGCGAACCGACTGGCGC    299
                     |||||||||||.|||||||||||.|||||||||||||||||||||||.|.
RBAM_023340__    247 TTATTCTGGACTCTTTTATCTCCGAACGGCGGAGGCGAACCGACTGGTGA    296

BSNT_03734___    300 GCTTGCTGAAGAGATC---AGCA-GTGTATTTGGAAGCTTTGACAAATTC    345
                     ||||||||||||||||   |||| |    ||.||||||||.||..||||.
RBAM_023340__    297 GCTTGCTGAAGAGATCAAAAGCACG----TTCGGAAGCTTCGATCAATTT    342

BSNT_03734___    346 AAAGAGCAATTCGCAGCAGCAGCAGCTGGACGCTTCGGTTCTGGCTGGGC    395
                     |||||..|||||||.||.|||||.||.||.||.||||||||.||||||||
RBAM_023340__    343 AAAGAAAAATTCGCCGCCGCAGCTGCAGGCCGTTTCGGTTCAGGCTGGGC    392

BSNT_03734___    396 ATGGCTTGTTGTGAACAACGGGAAACTTGAAATCACAAGCACGCCAAACC    445
                     .|||||.|||||.||||||||.|||||||||||.||||||||||||||||
RBAM_023340__    393 TTGGCTCGTTGTAAACAACGGCAAACTTGAAATTACAAGCACGCCAAACC    442

BSNT_03734___    446 AAGATTCTCCGCTTTCAGAAGGCAAAACGCCTATCTTAGGTCTTGACGTT    495
                     |||||||.||||||||||||||.|||||.|||.|..|.||||||||.|||
RBAM_023340__    443 AAGATTCACCGCTTTCAGAAGGTAAAACACCTGTTCTCGGTCTTGATGTT    492

BSNT_03734___    496 TGGGAGCATGCTTACTACCTTAACTATCAAAACCGCCGTCCTGATTACAT    545
                     ||||||||.||.||||||||.|||||.|||||||||||||||||||||||
RBAM_023340__    493 TGGGAGCACGCGTACTACCTGAACTACCAAAACCGCCGTCCTGATTACAT    542

BSNT_03734___    546 TTCAGCTTTCTGGAATGTTGTAAACTGGGACGAAGTGGCTCGTCTATACA    595
                     |||||||||||||||||||||.||||||||.|||||.||.|||||.||||
RBAM_023340__    543 TTCAGCTTTCTGGAATGTTGTGAACTGGGATGAAGTTGCCCGTCTTTACA    592

BSNT_03734___    596 GCGAAGCAAAATAA    609
                     ||||||||||||||
RBAM_023340__    593 GCGAAGCAAAATAA    606


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.