Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03740 and RBAM_023390

See Amino acid alignment / Visit BSNT_03740 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:02
# Commandline: needle
#    -asequence dna-align/BSNT_03740___yqfX.1.9828.seq
#    -bsequence dna-align/RBAM_023390___yqfX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03740___yqfX-RBAM_023390___yqfX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03740___yqfX-RBAM_023390___yqfX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03740___yqfX
# 2: RBAM_023390___yqfX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 485
# Identity:     290/485 (59.8%)
# Similarity:   290/485 (59.8%)
# Gaps:         121/485 (24.9%)
# Score: 1026.0
# 
#
#=======================================

BSNT_03740___      1 TTGACATTAACAGAAAAGTTTAGCAAACATGAATCAGGCAAAATGGATCA     50
                                                                       
RBAM_023390__      0 --------------------------------------------------      0

BSNT_03740___     51 AACTATAAAAGCTCCTTTAATAAAACAGAAGGGGGAATTGAAGGTGGCAA    100
                                                                ||||||.
RBAM_023390__      1 -------------------------------------------GTGGCAT      7

BSNT_03740___    101 ACGATTACGAAAAGCGTGATAA--CAACAGTTACTATGTTGATCATGGAT    148
                     |||||||||||||.|  ||.||  ||||...||||||||.||||||||||
RBAM_023390__      8 ACGATTACGAAAATC--GAAAAGGCAACGACTACTATGTGGATCATGGAT     55

BSNT_03740___    149 CTGAAGGGACAAATATTACCCGCGACAATGACGGTTTTTTTGAGGAAACA    198
                     |.|||||.||..||||.||.||      |||.|.||.||..||.||||||
RBAM_023390__     56 CGGAAGGAACCGATATCACGCG------TGATGTTTATTCAGAAGAAACA     99

BSNT_03740___    199 GCTGCTGAAATCGCAGAGCCTTATCGTGCTGCTGACC--GCAGCAATGAC    246
                     ||.||.|||||..|||||||.|||||||||.||||||  ||||||  |||
RBAM_023390__    100 GCGGCCGAAATTTCAGAGCCATATCGTGCTTCTGACCGGGCAGCA--GAC    147

BSNT_03740___    247 CAAGACAATGATCGCAGCGACGGCAATGTCAATGAAGGACGGGGAATAGG    296
                     |..||..||.|||   |.|||||   .||.|.||||||.|||||.|||||
RBAM_023390__    148 CGTGATGATAATC---GGGACGG---AGTAAGTGAAGGCCGGGGGATAGG    191

BSNT_03740___    297 ATATATCGCTTTAGCCTTGTCCATCATTTCATTGTTTGTACTGCCTGTTT    346
                     .|||...||.||.||..|.||.||||||||..|||||||.||.|||||||
RBAM_023390__    192 GTATGCAGCATTGGCTATTTCTATCATTTCCCTGTTTGTGCTCCCTGTTT    241

BSNT_03740___    347 TATTGGGAGC-TGCCGGTATTATTGTCGGCTATATCGCAAGAAGAAGAGG    395
                     ||||.||.|| || |||.|||||.||||||||||||||.|||||||||||
RBAM_023390__    242 TATTAGGGGCATG-CGGCATTATCGTCGGCTATATCGCCAGAAGAAGAGG    290

BSNT_03740___    396 TGCTCAAGGC-CTT--GGAGCCTGGGCAATGGGTATCGGTGTCGTTTCAT    442
                     .||   |||| |||  ||.|..|||||.|||||.||||||.|.|||||..
RBAM_023390__    291 AGC---AGGCGCTTTAGGCGGATGGGCGATGGGAATCGGTATTGTTTCCC    337

BSNT_03740___    443 TAGTGCTTGGAATATTTATTATTCCATTTTTCTAA    477
                     |.|||||.||.||.||.||||..||.|||||.|||
RBAM_023390__    338 TTGTGCTCGGCATCTTCATTACACCGTTTTTTTAA    372


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