Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03767 and RBAM_023560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:04
# Commandline: needle
# -asequence dna-align/BSNT_03767___glyS.1.9828.seq
# -bsequence dna-align/RBAM_023560___glyS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03767___glyS-RBAM_023560___glyS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03767___glyS-RBAM_023560___glyS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03767___glyS
# 2: RBAM_023560___glyS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2072
# Identity: 1589/2072 (76.7%)
# Similarity: 1589/2072 (76.7%)
# Gaps: 64/2072 ( 3.1%)
# Score: 6009.0
#
#
#=======================================
BSNT_03767___ 1 ATGAGTAAACAGGATTTACTTTTAGAGATCGGATTAGAGGAAATGCCGGC 50
|||||||||||.||.||.|||||||||||||||.|.||||||||||||||
RBAM_023560__ 1 ATGAGTAAACAAGACTTGCTTTTAGAGATCGGACTCGAGGAAATGCCGGC 50
BSNT_03767___ 51 GCGCTTTTTGAATGAAAGCATGGTTCAGCTTGGCGACAAGCTGACAGGCT 100
|||.|||||..||||.||||||||.|||||.||.||.||||||||.||||
RBAM_023560__ 51 GCGGTTTTTACATGACAGCATGGTGCAGCTCGGTGAAAAGCTGACCGGCT 100
BSNT_03767___ 101 GGCTTAAAGAAAAAAATATTACTCACGGTGAAGTGAAACTCTTCAATACA 150
||||....|||||||||||..|.|||||.|||||||||||.||.|||||.
RBAM_023560__ 101 GGCTGGCTGAAAAAAATATCGCCCACGGCGAAGTGAAACTTTTTAATACG 150
BSNT_03767___ 151 CCGAGACGTCTTGCTGTGTTCGTTAAGGGTGTCGCAGAAAAGCAGGATGA 200
|||||||||||.||.||.|...|.||.|..||.||||||||.||||.|||
RBAM_023560__ 151 CCGAGACGTCTGGCAGTATATATAAAAGACGTAGCAGAAAAACAGGCTGA 200
BSNT_03767___ 201 TATAAAAGAAGAAGCAAAAGGACCTGCGAAAAAAATTGCCCTTGATGCGG 250
|||..|.||||||||||||||.||||||||||||||.||.||.|||||.|
RBAM_023560__ 201 TATTCAGGAAGAAGCAAAAGGCCCTGCGAAAAAAATCGCTCTGGATGCTG 250
BSNT_03767___ 251 ACGGGAACTGGACAAAAGCGGCAATCGGCTTTTCAAAAGGCCAAGGCGC- 299
||||.||||||||||||||.||.|||||.||||||||||||||||||||
RBAM_023560__ 251 ACGGAAACTGGACAAAAGCCGCTATCGGATTTTCAAAAGGCCAAGGCGCC 300
BSNT_03767___ 300 -GAATGTGGAAGACCTGTACATCAAAGAAGTAAAAGGCATAGAGTATGTA 348
|| |||||.||||||||.||.|||||.|||||.||||..||.|||||.
RBAM_023560__ 301 GGA--GTGGATGACCTGTATATAAAAGATGTAAACGGCACGGAATATGTC 348
BSNT_03767___ 349 TTCGTGCAAAAATTCCAAGCCGGCCAAGAAACGAAGTCGCTTCTGCCAGA 398
|||||.|||||||||||.||.||.|||||.||||||.|.|||.|.||
RBAM_023560__ 349 TTCGTTCAAAAATTCCAGGCGGGACAAGAGACGAAGACACTTTTACC--- 395
BSNT_03767___ 399 ATTG-AGCGG-----TTTAATTACAAGCTTGCATTTCCCGAAAAACATGC 442
| |||.| |||.|||.|..|..|||||||.|||||||||||||
RBAM_023560__ 396 ---GCAGCTGGAAAATTTGATTGCCGGAATGCATTTTCCGAAAAACATGC 442
BSNT_03767___ 443 GCTGGGGAAATGAAGATTTGCGTTATATCCGACCGATCAAATGGATTGTC 492
|||||||.|...|.|||.||||.||||||||.|||||||||||||||.||
RBAM_023560__ 443 GCTGGGGCACGCAGGATCTGCGCTATATCCGTCCGATCAAATGGATTATC 492
BSNT_03767___ 493 GCATTATTTGGACAGGATGTCATTCCATTTTCGATCACAAACGTTGAGTC 542
||..|.||||||.|.||.||||||||.|||...||||||||.||.||..|
RBAM_023560__ 493 GCTCTCTTTGGAAAAGACGTCATTCCGTTTAAAATCACAAATGTAGAAAC 542
BSNT_03767___ 543 TGGACGGACAACACAGGGACATCGTTTCCTCGGACATGAAGTGTCAATTG 592
.||.||||..||.||||||||.||.||.|||||.||.|||||.||..|||
RBAM_023560__ 543 GGGCCGGAACACGCAGGGACACCGCTTTCTCGGCCAAGAAGTATCTGTTG 592
BSNT_03767___ 593 AATCACCTTCAGCTTATGAAGAGCAGCTGAAAGAAC--AGCATGTTATTG 640
|..||||.|||.|.||.|||.|||.||||||||||| ||| ||.||||
RBAM_023560__ 593 ATGCACCGTCATCATACGAAAAGCTGCTGAAAGAACAAAGC--GTCATTG 640
BSNT_03767___ 641 CTGATCCTAGCGTCCGAAAGCAAATGATTCAATCTCAGCTGGAAGCAATG 690
||||.||.|..|..||.||.||||||||.|||...||||||||.||..|.
RBAM_023560__ 641 CTGACCCGAAAGAACGCAAACAAATGATCCAAAGCCAGCTGGACGCGCTT 690
BSNT_03767___ 691 GCTGCTGAAAACAATTGGAGCATTCCAGTTGACGAAGACCTTCTTGATGA 740
||.||.||.||.||.||||.||||||..|.||.||.||.||.||..|.||
RBAM_023560__ 691 GCAGCCGAGAAGAAATGGAACATTCCGATCGATGAGGATCTGCTGAACGA 740
BSNT_03767___ 741 AGTGAATCATTTAGTAGAATACCCGACAGCTCTTTACGGTTCATTTGAAT 790
|||.||.|||.|.||.|||||||||||.||.||||||||.||.|||||||
RBAM_023560__ 741 AGTCAACCATCTGGTGGAATACCCGACGGCGCTTTACGGATCTTTTGAAT 790
BSNT_03767___ 791 CGGAGTTTCTGTCAATTCCTGAAGAAGTGCTTGTCACGACAATGAAAGAG 840
|.||||||||.||.||.|||||||||||||||||.||.||||||||||||
RBAM_023560__ 791 CCGAGTTTCTTTCTATCCCTGAAGAAGTGCTTGTGACAACAATGAAAGAG 840
BSNT_03767___ 841 CATCAGCGCTACTTCCCTGTCAAAGACAAAAACGGTGACCTGCTGCCTCA 890
|||||||||||||||||.||.|||||..|||||||..|.|||||.|||||
RBAM_023560__ 841 CATCAGCGCTACTTCCCGGTAAAAGATGAAAACGGGAATCTGCTTCCTCA 890
BSNT_03767___ 891 CTTTATCACAGTCCGAAACGGCAACAGCCACGCGATTGAAAATGTGGCCC 940
.|||||.||.||..|||||||.||||||||.||.|||||||||||.||||
RBAM_023560__ 891 TTTTATTACGGTAAGAAACGGGAACAGCCATGCAATTGAAAATGTTGCCC 940
BSNT_03767___ 941 GAGGCAATGAAAAAGTGCTGCGCGCACGTTTATCTGATGCTTCATTCTTC 990
|.||.||.||.|||||||||.|.|||.|..|.||.||||||.|.||||||
RBAM_023560__ 941 GCGGAAACGAGAAAGTGCTGAGAGCAAGGCTTTCAGATGCTGCGTTCTTC 990
BSNT_03767___ 991 TACAAGGAAGATCAGAAACTAAACATTGATGCAAATGTGAAGAAGCTTGA 1040
|||||.|||||.||.||.||.||||||||||.||||||||||||.||.||
RBAM_023560__ 991 TACAAAGAAGACCAAAAGCTGAACATTGATGAAAATGTGAAGAAACTGGA 1040
BSNT_03767___ 1041 AAATATCGTTTTCCATGAAGAGCTTGGTTCTCTTGCTGATAAGGTTAGAA 1090
||||||||||||||||||||||||.||.||.||||..|||||.||.||||
RBAM_023560__ 1041 AAATATCGTTTTCCATGAAGAGCTCGGCTCCCTTGGAGATAAAGTAAGAA 1090
BSNT_03767___ 1091 GAGTCACATCAATCGCAGAGAAACTTGCCGTTCGTCTTCAGGCTGATGAA 1140
||||.||..|.||.||.|..|||||||||||.||.||..|.||.||||||
RBAM_023560__ 1091 GAGTGACCGCCATTGCGGGCAAACTTGCCGTCCGCCTGAAAGCGGATGAA 1140
BSNT_03767___ 1141 GATACATTAAAACATGTGAAGCGGGCTGCTGAAATTTCTAAATTCGACCT 1190
.|.||...|||||.|||||||||.||.||.||.|||||||||||.|||||
RBAM_023560__ 1141 CAGACGCAAAAACTTGTGAAGCGCGCCGCAGAGATTTCTAAATTTGACCT 1190
BSNT_03767___ 1191 TGTGACGCATATGATATATGAATTCCCTGAACTTCAAGGAATTATGGGCG 1240
.||.||.||||||||.|||||.|||||.||.||||||||..|.|||||.|
RBAM_023560__ 1191 GGTTACACATATGATCTATGAGTTCCCAGAGCTTCAAGGCGTGATGGGAG 1240
BSNT_03767___ 1241 AAAAGTATGCGAGAATGCTTGGCGAAGATGAAGCTGTGGCTGCGGCAGTT 1290
||||.||||||.|.|||||.||.||||||||.||.||.|||||.||.||.
RBAM_023560__ 1241 AAAAATATGCGCGCATGCTCGGTGAAGATGATGCCGTCGCTGCCGCTGTC 1290
BSNT_03767___ 1291 AATGAACATTATATGCCTAGATCAGCGGGCGGAGAAACGCCTTCTACTTT 1340
|||||.||.||||||||.|||.|.||.||.||||||..||||||.||.||
RBAM_023560__ 1291 AATGAGCACTATATGCCGAGAGCGGCCGGGGGAGAAGTGCCTTCAACCTT 1340
BSNT_03767___ 1341 CACCGGAGCTGTTGTAGCAATGGCGGATAAGCTTGACACAATCGCTTCAT 1390
.|||||.||.||.||.||..|.||.|||||.||.|||||.||.|||||.|
RBAM_023560__ 1341 TACCGGCGCGGTCGTGGCGTTAGCTGATAAACTAGACACGATTGCTTCCT 1390
BSNT_03767___ 1391 TCTTCTCTATCGGCGTAATTCCGACCGGTTCCCAGGACCCTTACGGACTG 1440
|||||...||.|.||||||||||||.|||||.|||||.||.||||||.||
RBAM_023560__ 1391 TCTTCAGCATTGACGTAATTCCGACAGGTTCTCAGGATCCGTACGGATTG 1440
BSNT_03767___ 1441 CGCCGCCAAGCAAGCGGTATTGTTGCGATTCTTCTTGACCGCAACTGGGG 1490
|||||.||.||||||||.||.|||.|.|||||..|.||||||||.|||||
RBAM_023560__ 1441 CGCCGTCAGGCAAGCGGCATCGTTTCCATTCTGATCGACCGCAATTGGGG 1490
BSNT_03767___ 1491 AATTTCATTTGAAGAGCTGCTTACTTTCGTACAAACCGATAAAGAAATTG 1540
.|||||.|||.||||||||||..|.||...|.||||.||.|||||||.||
RBAM_023560__ 1491 CATTTCTTTTAAAGAGCTGCTGTCATTGACAGAAACGGAAAAAGAAAATG 1540
BSNT_03767___ 1541 AACTGCTGGATTTCTTCACTCAGCGCTTGAAATATGTCTTGAATGCTGAA 1590
|.||.||.||||||||.||.|||||..|||||||.|||||.||.||||||
RBAM_023560__ 1541 AGCTCCTCGATTTCTTTACACAGCGTCTGAAATACGTCTTAAACGCTGAA 1590
BSNT_03767___ 1591 CAAATCAGACATGATGTCATTGACGCCGTGCTGGAAAGCTCTGAGCTTGA 1640
.|.|||.|.|||||.||.|||||.|||||.|||||.|||.|.||||||||
RBAM_023560__ 1591 GACATCCGTCATGACGTTATTGAAGCCGTTCTGGACAGCACAGAGCTTGA 1640
BSNT_03767___ 1641 GCCGTACTCTGCGCTGCATAAAGCACAAGTACTGGAGCAAAAGCTTGGTG 1690
|||.||..|.||..|.|||||.|||..|||.||.|||.|..|.||.||..
RBAM_023560__ 1641 GCCATATGCAGCCGTTCATAAGGCAAGAGTGCTTGAGAAGCACCTCGGCA 1690
BSNT_03767___ 1691 CACCTGGCTTTAAGGAAACAGCCGAAGCGTTAGGCCGAGTGATCTCTATC 1740
||||.||||||||.|||||.||.|||.|..|.|||||.||.|||||.|||
RBAM_023560__ 1691 CACCCGGCTTTAAAGAAACGGCTGAATCACTCGGCCGGGTCATCTCCATC 1740
BSNT_03767___ 1741 AGCAAAAAAG----GAGTCCGCGGAGACATTCAGCCTGATCTGTTTGAAA 1786
|||||||||| ||| |||| ||.||..|.||.|||||||||||||
RBAM_023560__ 1741 AGCAAAAAAGGCGAGAG-CCGC---GATATCAATCCGGATCTGTTTGAAA 1786
BSNT_03767___ 1787 ATGAATACGAAGCAAAA-CTGTTTGATGCCTACCAAACAGCGAAGCAAAA 1835
|||||.| |.||.|||| ||||||||.||.||.|||| ||.|||||
RBAM_023560__ 1787 ATGAACA-GGAGAAAAAGCTGTTTGACGCTTATCAAA-----AAACAAAA 1830
BSNT_03767___ 1836 -------TCTGCAGGAAAACTT---CAGCAAAAAAGATTATGAGGCGGCG 1875
|| || |||||.||| |..||||| |.|||||...||||
RBAM_023560__ 1831 GACAGTGTC-GC-GGAAAGCTTTGCCTCCAAAA---ACTATGAACAGGCG 1875
BSNT_03767___ 1876 CTTGCTTCACTTG--CAGC--CTTAAAAGAACCGATCGATGCTTACTTCG 1921
||||| |.|| |||| .|||||.||.|||||.||.|..|||||..
RBAM_023560__ 1876 CTTGC----CGTGCTCAGCGGATTAAAGGAGCCGATTGAAGACTACTTTA 1921
BSNT_03767___ 1922 ATCATACAATGGTTATAGCGGATAATGAGTCATTAAAGGCAAATCGTTTA 1971
||||.||.|||||.|..|||||..||||..|||||||..|.||.||||||
RBAM_023560__ 1922 ATCACACGATGGTAAATGCGGACGATGAAGCATTAAAAACCAACCGTTTA 1971
BSNT_03767___ 1972 GCGCAAATGGTAA--GCT-TGGCGGATGAGATCAAGTCCTTTGCGAATAT 2018
||||||||| | ||| |.||.||||.|||||||||.|||||.|||||
RBAM_023560__ 1972 GCGCAAATG---ACCGCTCTTGCAGATGTGATCAAGTCTTTTGCTAATAT 2018
BSNT_03767___ 2019 GAATGCCCTTATTGTAAAATAA 2040
||||...|||||||||||||||
RBAM_023560__ 2019 GAATCATCTTATTGTAAAATAA 2040
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