Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03769 and RBAM_023580

See Amino acid alignment / Visit BSNT_03769 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:04
# Commandline: needle
#    -asequence dna-align/BSNT_03769___recO.1.9828.seq
#    -bsequence dna-align/RBAM_023580___recO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03769___recO-RBAM_023580___recO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03769___recO-RBAM_023580___recO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03769___recO
# 2: RBAM_023580___recO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 774
# Identity:     614/774 (79.3%)
# Similarity:   614/774 (79.3%)
# Gaps:          12/774 ( 1.6%)
# Score: 2415.0
# 
#
#=======================================

BSNT_03769___      1 ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGA     50
                     ||||||||.|||||||||||||||||.||.||.||.|||||.|||||.||
RBAM_023580__      1 ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGA     50

BSNT_03769___     51 GACGAATAAAATCGTAACTTTACTGACAAGAGAACACGGAAAAATAGGTG    100
                     |||||||||||||||.||.||.|||||.||.||||||||.|||||.||.|
RBAM_023580__     51 GACGAATAAAATCGTGACATTGCTGACGAGGGAACACGGCAAAATCGGCG    100

BSNT_03769___    101 TTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGC    150
                     |.||||||.|.|||||||..||..|...||||||..|.||||||||||||
RBAM_023580__    101 TCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGC    150

BSNT_03769___    151 CAGCCCTTTTTGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGG    200
                     |||||.||||||||.||.||.||.||||||||||.||||||.||.|||||
RBAM_023580__    151 CAGCCGTTTTTGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGG    200

BSNT_03769___    201 AACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGCATCAGGGAAG    250
                     .|||||.||||||||.||||||||.||||||||||||...|||||.||||
RBAM_023580__    201 CACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACGATCAGAGAAG    250

BSNT_03769___    251 ACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTC---GAC    297
                     |.||.|||||.||.||.|||||.||.|.|||.|||||   |.||   |||
RBAM_023580__    251 ATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGA---ACTCACTGAC    297

BSNT_03769___    298 AGAGGCACAGAAGAAAAAAAGCCAAATCCTTATTTATTTGAATTCATATT    347
                     |.|||.||.|||||.||.||.||.||.||.||||||||.|||||.||..|
RBAM_023580__    298 AAAGGAACGGAAGAGAAGAAACCGAACCCCTATTTATTCGAATTGATTCT    347

BSNT_03769___    348 AGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCT    397
                     .|||||.||.||...|||||||||.||.||.||.|||||.||.|||||||
RBAM_023580__    348 CGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCT    397

BSNT_03769___    398 TCATTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTG    447
                     ||||.||.||.|||||.||||||||.||||||||.||||||||.||||||
RBAM_023580__    398 TCATCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTG    447

BSNT_03769___    448 AATCATTGTGTACATTGTAAGAGCCAAGACGGAACCTTTCATTTCTCTGT    497
                     |||||||||||.||.||.||.|||...||.||.||.||||||||.||..|
RBAM_023580__    448 AATCATTGTGTCCACTGCAAAAGCGGGGAAGGGACGTTTCATTTTTCGAT    497

BSNT_03769___    498 TCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACA    547
                     ..|.|||||.||.|||||.|||||||||||.||||||||.|||||.||||
RBAM_023580__    498 AAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACA    547

BSNT_03769___    548 GGATACCGCTCAAACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTAT    597
                     |..|.|||.|....||||||||||||||||||.||||.||.|||||.||.
RBAM_023580__    548 GAGTTCCGATGTCGCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTAC    597

BSNT_03769___    598 TTTGATCTGTCG--AGGCTCGGCAATGTGTCCTTAAAAGAGGAAA-CAAA    644
                     |||||  |.|||  ||||||||||..||.||.||||||.|||||| ||||
RBAM_023580__    598 TTTGA--TATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAACCAAA    645

BSNT_03769___    645 AGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGAT    694
                     |.|..||||||| |..||.||||||.|.||||||||.||||||||.|||.
RBAM_023580__    646 AACGAAATTAAA-CGGGTCATTGATCTGTATTACGAGGAATATTCAGGAC    694

BSNT_03769___    695 TGTATTTAAAATCAAAGCGCTTTTTAGATCAAATGGAAAGCATGAAACAT    744
                     |.||||||||.|||||.||.|||||||||||.||||||||||||||..|.
RBAM_023580__    695 TTTATTTAAAGTCAAAACGGTTTTTAGATCAGATGGAAAGCATGAAGAAC    744

BSNT_03769___    745 CTTATGGGTGAAAACAAAAGTTGA    768
                     |||.|||.||||||||||||||||
RBAM_023580__    745 CTTTTGGATGAAAACAAAAGTTGA    768


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