Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03789 and RBAM_023750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:06
# Commandline: needle
# -asequence dna-align/BSNT_03789___prmA.1.9828.seq
# -bsequence dna-align/RBAM_023750___prmA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03789___prmA-RBAM_023750___prmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03789___prmA-RBAM_023750___prmA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03789___prmA
# 2: RBAM_023750___prmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 940
# Identity: 802/940 (85.3%)
# Similarity: 802/940 (85.3%)
# Gaps: 8/940 ( 0.9%)
# Score: 3429.0
#
#
#=======================================
BSNT_03789___ 1 TTGAAATGGTCCGAATTAAGCATTCACACAACACATGAAGCGGTCGAACC 50
|||||||||||||||.|.||||||||||||||||||||||||||||||||
RBAM_023750__ 1 TTGAAATGGTCCGAAATCAGCATTCACACAACACATGAAGCGGTCGAACC 50
BSNT_03789___ 51 TATCTCAAATATATTGCATGAAGCTGGTGCAAGTGGGGTTGTGATAGAGG 100
.|||||||||||.|||||||||||||||||.||.||||||||.||.||.|
RBAM_023750__ 51 CATCTCAAATATTTTGCATGAAGCTGGTGCGAGCGGGGTTGTCATCGAAG 100
BSNT_03789___ 101 ACCCGCTTGATTTAATTAAAGAACGTGAGAATGTGTACGGGGAAATCTAC 150
|.||||||||||||||.|||||.|||||||||||.|||||||||||||||
RBAM_023750__ 101 ATCCGCTTGATTTAATGAAAGAGCGTGAGAATGTTTACGGGGAAATCTAC 150
BSNT_03789___ 151 CAGCTCGACCCCAATGATTACCCAGATGAGGGTGTCATTGTCAAAGCATA 200
|||||||||||||||||||||||.|||||||||||||||||||||||.||
RBAM_023750__ 151 CAGCTCGACCCCAATGATTACCCCGATGAGGGTGTCATTGTCAAAGCGTA 200
BSNT_03789___ 201 TCTGCCGGTTAACAGTTTTCTGGGCGAAACTGTAGACGGCATCAAAGAAA 250
|||||||.|.||||||||.||.||||||||.||.||||||||.|||||.|
RBAM_023750__ 201 TCTGCCGATCAACAGTTTCCTCGGCGAAACGGTGGACGGCATAAAAGAGA 250
BSNT_03789___ 251 CGATTAATAATCTCCTTCTTTACAATATTGATTTGGGCAGAAACCAC-AT 299
|||||||||||||.|||.|.|||.|.||||||||||||||||| ||| ||
RBAM_023750__ 251 CGATTAATAATCTGCTTTTGTACGACATTGATTTGGGCAGAAA-CACAAT 299
BSNT_03789___ 300 CACTATTTCTGAAGTAAATGAAGAAGAGTGGGCGACTGCCTGGAAAAAGT 349
|||.|||||||||||.|||||||||||.||||||||.||.||||||||||
RBAM_023750__ 300 CACCATTTCTGAAGTTAATGAAGAAGAATGGGCGACAGCTTGGAAAAAGT 349
BSNT_03789___ 350 ATTATCATCCTGTGAAAATTTCTGAAAAGTTTACAATTGTGCCGACGTGG 399
|||||||||||||||||||||||||||||||.||.||.||.||.||.|||
RBAM_023750__ 350 ATTATCATCCTGTGAAAATTTCTGAAAAGTTCACGATCGTTCCCACTTGG 399
BSNT_03789___ 400 GAGGAA--TATACGCCGGTCCATACTGATGAACTGATTATTGAAATGGAC 447
|| || ||.||.||.||.|||||.||||||||||||||.||||||||.
RBAM_023750__ 400 GA--AACGTACACACCTGTTCATACAGATGAACTGATTATCGAAATGGAT 447
BSNT_03789___ 448 CCGGGAATGGCTTTCGGCACAGGGACACATCCGACAACCGTACTCTGCAT 497
|||||.|||||.|||||.||.||.||.||||||||||||||.||.|||||
RBAM_023750__ 448 CCGGGTATGGCATTCGGTACGGGAACGCATCCGACAACCGTTCTGTGCAT 497
BSNT_03789___ 498 TCAGGCGCTTGAACGCTTTGTGCAAAAGGGTGATAAGGTGATTGATGTCG 547
||||||||||||.||..|.||.|||||.||.||....||.||||||||||
RBAM_023750__ 498 TCAGGCGCTTGAGCGTATCGTTCAAAAAGGCGACCGTGTCATTGATGTCG 547
BSNT_03789___ 548 GCACTGGTTCGGGAATTTTAAGTATTGCGGCTGCAATGCTTAAGGCTGAA 597
||||.|||||.|||||||||||.||.|||||.||.||||||.||||.|||
RBAM_023750__ 548 GCACCGGTTCAGGAATTTTAAGCATCGCGGCCGCCATGCTTGAGGCCGAA 597
BSNT_03789___ 598 TCGGTTCATGCCTACGATCTTGATCCCGTGGCTGTAGAAAGTGCACGCCT 647
|||||||||||.||.||.||||||||.||.|||||.|||||.||.||.||
RBAM_023750__ 598 TCGGTTCATGCGTATGACCTTGATCCGGTCGCTGTTGAAAGCGCGCGTCT 647
BSNT_03789___ 648 CAATCTCAAGCTGAACAAAGTCAGCGATATTGCTCAAGTGAAGCAAAACA 697
.|||.|.||..||||||||||.||.||||..|||.||||||||||.||||
RBAM_023750__ 648 GAATGTGAAATTGAACAAAGTGAGTGATACGGCTGAAGTGAAGCAGAACA 697
BSNT_03789___ 698 ATTTGTTAGACGGGATTGAAGGG-GAACATGATGTGATTGTGGCCAACAT 746
|||||||||||||.| |.|.||| |||||||||||.|||||.||.||.||
RBAM_023750__ 698 ATTTGTTAGACGGCA-TCACGGGCGAACATGATGTCATTGTCGCAAATAT 746
BSNT_03789___ 747 TTTGGCTGAAGTCATTCTTCGCTTTACTTCACAAGCGTACAGCCTGTTAA 796
||||||.|||||.|||||.||||||||.|||||.||||||..||||.|.|
RBAM_023750__ 747 TTTGGCGGAAGTGATTCTCCGCTTTACATCACAGGCGTACGACCTGCTCA 796
BSNT_03789___ 797 AAGAAGGCGGCCACTTTATTACGTCAGGAATCATCGGTCATAAAAAACAA 846
||||.||.|||||.||||||||.|||||.||.|||||.||.||||||||.
RBAM_023750__ 797 AAGACGGAGGCCATTTTATTACTTCAGGCATTATCGGCCAGAAAAAACAG 846
BSNT_03789___ 847 GAAGTAAAAGAAGCACTGGAACAAGCTGGCTTTACCATTGTAGAAATCCT 896
||||||||||||||..|||||.||||.|||||||||||..|||||||.||
RBAM_023750__ 847 GAAGTAAAAGAAGCGTTGGAAAAAGCCGGCTTTACCATCATAGAAATTCT 896
BSNT_03789___ 897 TTCAATGGAAGATTGGGTCAGCATTATTGCGAAAAAATAA 936
.||.||||||||||||||||||||.||.||||||||||||
RBAM_023750__ 897 GTCTATGGAAGATTGGGTCAGCATCATCGCGAAAAAATAA 936
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