Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03801 and RBAM_023840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_03801___gpr.1.9828.seq
# -bsequence dna-align/RBAM_023840___gpr.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03801___gpr-RBAM_023840___gpr.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03801___gpr-RBAM_023840___gpr.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03801___gpr
# 2: RBAM_023840___gpr
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity: 845/1134 (74.5%)
# Similarity: 845/1134 (74.5%)
# Gaps: 54/1134 ( 4.8%)
# Score: 3106.0
#
#
#=======================================
BSNT_03801___ 1 ATGAAAAAGAGTGAGCTGGATGTGAATCAGTATTTGATACGTACCGATTT 50
.|||||||.|..||.||||||||.|||||.|.|.|||||||.||.|||||
RBAM_023840__ 1 GTGAAAAACAACGAACTGGATGTCAATCAATTTCTGATACGGACGGATTT 50
BSNT_03801___ 51 GGCAGTGGAAACGAA------GG---AAGCAATGGCCAATCAGCAGGCTG 91
.||.||.|||||||| || ||| |.||.||| ||.|
RBAM_023840__ 51 AGCGGTAGAAACGAAACAGGCGGTAAAAG--ACGGACAA-------GCCG 91
BSNT_03801___ 92 TGCCGACAAAAGAAATTAAAGGCTTTATTGAAAAAGAGCGTGATCATGGC 141
..|.||.|||||||||.||.||.||||||||||||||.||.||..|.|||
RBAM_023840__ 92 GTCAGAAAAAAGAAATAAACGGGTTTATTGAAAAAGAACGCGACAAGGGC 141
BSNT_03801___ 142 GGCATTAAAATCCGCACAGTTGATGTTACAAAGGAAGGCGCAGAGCTTTC 191
|||||||||.||.|.||.||.|||.||||.||.||||||||.||.||.||
RBAM_023840__ 142 GGCATTAAAGTCAGAACCGTCGATATTACCAAAGAAGGCGCCGAACTATC 191
BSNT_03801___ 192 GGGAAAAAAAGAAGGG-CGCTATTTAACGCTTGAAGCAC-AGGGAATCAG 239
||| .||||||.|||| ||||||.|.|||.|.||.||.| ||||..|| |
RBAM_023840__ 192 GGG-GAAAAAGCAGGGACGCTATGTCACGATCGAGGCTCAAGGGGTTC-G 239
BSNT_03801___ 240 GGAGAATGATTCGGAAATGCAGGAGAAGGTCTCTGCTGTCTTTGCGGAGG 289
|||..|.||.||.||.||||||||.||.||..|.|..||.|||||.||||
RBAM_023840__ 240 GGAACACGACTCTGACATGCAGGAAAAAGTAACGGAAGTGTTTGCCGAGG 289
BSNT_03801___ 290 AATTCTCAGCTTTTCT-------TGAAAACCTTAATATCTCAAAAGATGC 332
||||.||.||.|.||| | |.||.||..||||.|||||
RBAM_023840__ 290 AATTTTCCGCCTATCTGTCGGCAT-------TAAAGATTCCAAAGGATGC 332
BSNT_03801___ 333 GAGCTGTTTGATCGTTGGGCTCGGCAACTGGAACGTGACACCTGATGCGC 382
.||||||||||||||.||.||||||||||||||.|||||.||.|||||||
RBAM_023840__ 333 AAGCTGTTTGATCGTGGGTCTCGGCAACTGGAATGTGACGCCGGATGCGC 382
BSNT_03801___ 383 TTGGACCGATGG----CAGTAGAAAATCTGTTGGTAACAAGGCACTTGTT 428
|.||.||..|.| | |||||.||..|.||.||||||||..||||
RBAM_023840__ 383 TCGGCCCTCTCGTGACC----GAAAACCTTCTTGTGACAAGGCATCTGTT 428
BSNT_03801___ 429 TAAGCTTCAGCCGGAAAACGTACAGGAGGGTTACAGGCCTGTCAGTGCTT 478
.|.||||||||||||||||||.|||||.||.||||||||.|||||.||..
RBAM_023840__ 429 CAGGCTTCAGCCGGAAAACGTGCAGGAAGGGTACAGGCCGGTCAGCGCGC 478
BSNT_03801___ 479 TTGCACCGGGTGTAATGGGGATAACAGGAATCGAAACAAGTGACATTATT 528
||||.||.|||||.|||||..||||.|||||.|||||.||.||.||||||
RBAM_023840__ 479 TTGCTCCCGGTGTGATGGGATTAACGGGAATTGAAACGAGCGATATTATT 528
BSNT_03801___ 529 AAAGGTGTGATTGAGCAATCGAAGCCTGATTTTGTCATCGCCATTGATGC 578
.||||.|||||..|..||||.|||||.||||||||.|||||..|.||.||
RBAM_023840__ 529 CAAGGCGTGATCAAAGAATCAAAGCCGGATTTTGTGATCGCGGTAGACGC 578
BSNT_03801___ 579 GTTGGCGGCGCGGGCGGTGGAAAGGGTCAACACAACCATTCAAATATCGG 628
..|.|||||..|.||.||.||||||||.|||||.|||||.|||.|.||.|
RBAM_023840__ 579 TCTTGCGGCCAGAGCCGTTGAAAGGGTGAACACGACCATCCAATTTTCTG 628
BSNT_03801___ 629 ATACAGGCATTCACCCGGGATCTGGAGTGGGGAATAAACGAAAAGATTTA 678
||||.|||||||||||||||||.||.||.||.|||||..|||||||.|||
RBAM_023840__ 629 ATACGGGCATTCACCCGGGATCAGGCGTCGGCAATAAGAGAAAAGAATTA 678
BSNT_03801___ 679 AGCAAAGACACGCTTGGTGTTCCGGTGATTGCTATCGGTGTTCCGACAGT 728
|||||.||.|||||.||..||||.||.||.||.|||||.||.|||||.||
RBAM_023840__ 679 AGCAAGGAAACGCTCGGCATTCCCGTCATCGCAATCGGGGTACCGACTGT 728
BSNT_03801___ 729 AGTTGATGCCGTGACAATTGCCAGCGACACGGTGGACTACATATTAAAAC 778
.||||||||.||.||.||.||.|||||.||||||||.||.||||||||||
RBAM_023840__ 729 CGTTGATGCGGTTACGATCGCAAGCGATACGGTGGATTATATATTAAAAC 778
BSNT_03801___ 779 ATTTTGGCAGAGAAATGAAGGATAACAGGCCATCAAGATCGCTTGTTCCG 828
||||.||.|||||.|||||.|||.||||.||.||||||||.||.||.||.
RBAM_023840__ 779 ATTTCGGAAGAGAGATGAAAGATGACAGCCCGTCAAGATCTCTGGTGCCC 828
BSNT_03801___ 829 GCAGGCATGACGTTTGGGAAAAAGAAAGTGCTCACTGAAGAAGATCTTCC 878
||.||.||||..||.||.||||||||.|||||.||.||.|||||.|||||
RBAM_023840__ 829 GCCGGAATGAACTTCGGCAAAAAGAAGGTGCTGACAGACGAAGACCTTCC 878
BSNT_03801___ 879 -CGATCAAAAGCAGCGCCAATCGTTCCTAGGGATTGTCGGAACCCTTCAA 927
.||..||||| |.||||||||.||.||.||.||||||||.||.||..|.
RBAM_023840__ 879 GGGAGAAAAAG-AACGCCAATCCTTTCTCGGTATTGTCGGCACGCTGGAC 927
BSNT_03801___ 928 GAAGATGAAAAACGGCAGCTCATTCACGAGGTGCTTTCGCCTTTAGGGCA 977
|||.|.||||||||.|||||.||||||||.||||||||.||..|.||.||
RBAM_023840__ 928 GAAAACGAAAAACGCCAGCTGATTCACGAAGTGCTTTCTCCGCTCGGCCA 977
BSNT_03801___ 978 CAACTTAATGGTTACACCGAAGGAAGTCGATT----CATTTATCGACGAT 1023
.||..|.|||||.||.|||||||| |||| |.|||||.||.|||
RBAM_023840__ 978 TAATCTGATGGTCACGCCGAAGGA----GATTGACACCTTTATTGATGAT 1023
BSNT_03801___ 1024 ATGGCAAATGTTTTAGCGAACGGATTAAACACAGCGCTTCATGAAAAAGT 1073
|||||.||.||..|.||.|||||.||||||||.||.||||||||||||||
RBAM_023840__ 1024 ATGGCGAACGTACTTGCAAACGGGTTAAACACCGCCCTTCATGAAAAAGT 1073
BSNT_03801___ 1074 GTCACAAGAAAACAAAGGCTCCTACAATCACTAA 1107
|||||||||.||||||||.||.||.|||||.|||
RBAM_023840__ 1074 GTCACAAGATAACAAAGGTTCTTATAATCATTAA 1107
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