Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03804 and RBAM_023860

See Amino acid alignment / Visit BSNT_03804 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:08
# Commandline: needle
#    -asequence dna-align/BSNT_03804___holA.1.9828.seq
#    -bsequence dna-align/RBAM_023860___holA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03804___holA-RBAM_023860___holA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03804___holA-RBAM_023860___holA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03804___holA
# 2: RBAM_023860___holA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1066
# Identity:     809/1066 (75.9%)
# Similarity:   809/1066 (75.9%)
# Gaps:          65/1066 ( 6.1%)
# Score: 3103.5
# 
#
#=======================================

BSNT_03804___      1 ATGGTATTTGATGTGTGGAAAAGCCTGAAAAAAGGAGATGTCC-ATCCAG     49
                     ||||||||||||||.||||||..||||||||||||.||||||| .||| |
RBAM_023860__      1 ATGGTATTTGATGTTTGGAAAGCCCTGAAAAAAGGGGATGTCCGCTCC-G     49

BSNT_03804___     50 TTTATTGTTTATACGGAAAAGAGACATATCTGCTGCAAGAAACCGTCAGC     99
                     |||||||.||||||||||||||.||.||||||||.||||||||.||||||
RBAM_023860__     50 TTTATTGCTTATACGGAAAAGAAACGTATCTGCTCCAAGAAACTGTCAGC     99

BSNT_03804___    100 AGGATCAGACAGACGGTCGTTGATCAGGAGACAAAGGATTTCAATCTATC    149
                     .||||||||||..|.|||||||||.||||||||||||||||.||.||.||
RBAM_023860__    100 CGGATCAGACAAGCTGTCGTTGATGAGGAGACAAAGGATTTTAACCTGTC    149

BSNT_03804___    150 CGTTTTTGATCTGGAAGAGGACCCGCTGGATCAAGCGATTGCAGATGCTG    199
                     .|||||||||||.|||||.||.|||||.||.||.||..|..|.|||||.|
RBAM_023860__    150 TGTTTTTGATCTTGAAGAAGATCCGCTTGACCAGGCCGTAACCGATGCGG    199

BSNT_03804___    200 AAACGTTTCCGTTTATGGGGGAGCGGCGTCTTGTCATTGTGAAAAATCCA    249
                     |||||||||||||||||||.|||..|||.||.|||||.||.||||||||.
RBAM_023860__    200 AAACGTTTCCGTTTATGGGAGAGAAGCGGCTGGTCATCGTAAAAAATCCG    249

BSNT_03804___    250 TATTTTTTAACAGGTGAAAAGAAAAAAGAAAAAATTGAGCACAACGT-CA    298
                     |.||||||||||||.|||||.||.|||||||||||.|||||.||  | ||
RBAM_023860__    250 TCTTTTTTAACAGGGGAAAAAAAGAAAGAAAAAATAGAGCATAA--TACA    297

BSNT_03804___    299 G-TGCGCTTGAATCATATATACAATCA-CCTGCGCCTTACACAGTCTTTG    346
                     | .||.||.||..|.|||.| .||..| |||||||||||.||.|||||||
RBAM_023860__    298 GCCGCTCTGGAGACTTATCT-GAAGGAGCCTGCGCCTTATACGGTCTTTG    346

BSNT_03804___    347 TCCTGCTTGCTCCGTATGAAAAGCTTGATGAGCGAAAAAAGCTGACGAAA    396
                     |..|..|.||||||||.||.|||||.||.||.||.|||||||||||||||
RBAM_023860__    347 TGATTGTGGCTCCGTACGAGAAGCTGGACGAACGGAAAAAGCTGACGAAA    396

BSNT_03804___    397 GCGTTAAAG----AAGCACGCGTTTATGATGGAGGCGAAGGAATTAAATG    442
                     |||.|.|||    ||||.|    |||||||.||.||.|||||..|.||||
RBAM_023860__    397 GCGCTGAAGCAAAAAGCCC----TTATGATTGAAGCTAAGGAGCTGAATG    442

BSNT_03804___    443 CAAAGGAAACGACAGACTTTACTGTCAACCTTGCAAAAACAGAGCAGAAA    492
                     |||||||.|||||.||.|||||..|.||.||.||.|||.|.||..|.|||
RBAM_023860__    443 CAAAGGAGACGACTGATTTTACGATTAATCTGGCGAAATCCGAAAATAAA    492

BSNT_03804___    493 ACAATCGGCACGGAAGCGGCGGAGCATTTGGTTCTGCTTGTGAACGGTCA    542
                     |..||||..||.|||||.||.|||||||||||||||||||..|||||.||
RBAM_023860__    493 ATGATCGATACAGAAGCTGCCGAGCATTTGGTTCTGCTTGCAAACGGCCA    542

BSNT_03804___    543 TCTGTCATCGATTTTTCAGGAGATTCAAAAGCTCTGCACGTTTATTGGAG    592
                     |||||||||.||.|.||||||.||.|||||.||||.|.|.|..|..||.|
RBAM_023860__    543 TCTGTCATCCATATATCAGGAAATACAAAAACTCTCCGCCTACACCGGTG    592

BSNT_03804___    593 ATCGTGAAGAAATTACGCTGGATGATGT-----AAAAATGCTTGTTGCTA    637
                     |..|..|.||.||.||.||.||.|||||     |     |||.||.||.|
RBAM_023860__    593 ACAGACATGAGATCACACTTGAAGATGTCCGGGA-----GCTCGTCGCAA    637

BSNT_03804___    638 GAAGCCTTGAACAAAATATTTTTGAGCTGATCAATAAAATCGTCAACCGA    687
                     ||||..|.||.||.||||||||||||||||||||.||||||||.||||||
RBAM_023860__    638 GAAGTTTGGAGCAGAATATTTTTGAGCTGATCAACAAAATCGTGAACCGA    687

BSNT_03804___    688 AAACGAACAGAGAGTCTGCAAATTTTTTATGATTTGCTAAAACAAAATGA    737
                     |||||.||.||.|||||.|||||.|||||||||.|..||||||||||.||
RBAM_023860__    688 AAACGGACGGAAAGTCTTCAAATATTTTATGATCTTTTAAAACAAAACGA    737

BSNT_03804___    738 AGAACCGATCAAAATTATGGCGCTTATTTCGAATCAGTTCCGGCTGATTC    787
                     ||||||||||||||||||||||||.||..|.||.||.|||||.||||||.
RBAM_023860__    738 AGAACCGATCAAAATTATGGCGCTGATCGCCAACCAATTCCGTCTGATTA    787

BSNT_03804___    788 TGCAGACGAAGTACTTCGCGGAACAGGGATACGGACAAAAACAAATCGCT    837
                     |||||||.|||||.||.||||.|||.||||||||.|||||.|||||||||
RBAM_023860__    788 TGCAGACAAAGTATTTTGCGGGACAAGGATACGGCCAAAAGCAAATCGCT    837

BSNT_03804___    838 TCTAATCTAAAAGTTCACCCATTTCGGGTAAAGCTGGCGATGGATCAAGC    887
                     ||.||..||||.||.|||||.||.||||||||.||||||||||||||.||
RBAM_023860__    838 TCCAACTTAAAGGTGCACCCCTTCCGGGTAAAACTGGCGATGGATCAGGC    887

BSNT_03804___    888 AAGGCTTTTTTCAGAGGAGGAGCTCCGTTTAATTATTGAACAG-CTTGCC    936
                     .|||||||||||.||.||.|||||.||....|||||.||| || ||.||.
RBAM_023860__    888 GAGGCTTTTTTCTGAAGAAGAGCTGCGGCGTATTATAGAA-AGACTCGCG    936

BSNT_03804___    937 GTCATGGACTATGAGATGAAAACCGGGAAAAAGGACAAGCAGCTCCTGCT    986
                     ||.|||||.|||||.||||||||.|||||||||||||||||||||.||||
RBAM_023860__    937 GTGATGGATTATGAAATGAAAACGGGGAAAAAGGACAAGCAGCTCTTGCT    986

BSNT_03804___    987 CGAACTGTTCCTTTTACAGCT-----GTTAAAAAGA---AATGAAAAAAA   1028
                     .|||||.||.||..|..||||     |       ||   |||||      
RBAM_023860__    987 GGAACTCTTTCTCCTTGAGCTTCTCCG-------GACTGAATGA------   1023

BSNT_03804___   1029 CGATCCCCATTATTGA   1044
                                     
RBAM_023860__   1023 ----------------   1023


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