Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03809 and RBAM_023870
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:08
# Commandline: needle
# -asequence dna-align/BSNT_03809___comEC.1.9828.seq
# -bsequence dna-align/RBAM_023870___comEC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03809___comEC-RBAM_023870___comEC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03809___comEC-RBAM_023870___comEC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03809___comEC
# 2: RBAM_023870___comEC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2549
# Identity: 1553/2549 (60.9%)
# Similarity: 1553/2549 (60.9%)
# Gaps: 442/2549 (17.3%)
# Score: 4219.5
#
#
#=======================================
BSNT_03809___ 1 ---------------------------ATGGCGGCAGCTTCGGCAACGGC 23
.|||||||.|.|||.|||||.||
RBAM_023870__ 1 ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCGGTTTCTGCAACTGC 50
BSNT_03809___ 24 TGGAATTACTGCCGCCGCTTATTTC--------CCCGCT-ATTTTTCTT- 63
.||||| ||||||||||.||.|| .|.||| .||||||||
RBAM_023870__ 51 GGGAAT---TGCCGCCGCTCATGTCTTCTGGGTTCTGCTCCTTTTTCTTC 97
BSNT_03809___ 64 TTCATCCTCTTTCTCCTCATCATTTTAATCAAAACGAGGCACGCTTTTCT 113
|..||| |||||.|.||.|||.|| |||||.|.||| .|.|.||
RBAM_023870__ 98 TGTATC----TTCTCTTTATTATTGTA---AAAACAAAGCA--GTATGCT 138
BSNT_03809___ 114 C--ATTATTGT-----TTGTTTCTTCTCT---TTTATATTGTTT-TTTGT 152
| .||||.|| |.||||||| |.| ||||| ||.||| |||.|
RBAM_023870__ 139 CCGGTTATCGTCTGCCTCGTTTCTT-TTTGTGTTTAT-TTCTTTCTTTAT 186
BSNT_03809___ 153 ACTGTATGCAGTCACAGATTCTCAGAATGTCTCTTCCTAT-----CGGCA 197
||.||.|| .||..||..||||||..|...|||| |||||
RBAM_023870__ 187 ACGGTTTG-------TGACGCTGCGAATGTAACGCGCTATCAGGCCGGCA 229
BSNT_03809___ 198 G------GGAACCTATCAATTCAAGGCAGTGATTGACAC---TATTCCCA 238
| .|||| ||||.||.|| ||| ||||||.|
RBAM_023870__ 230 GTTATACTGAAC-----------AGGCCGTCAT---CACTAATATTCCGA 265
BSNT_03809___ 239 AAATTGACG--GCGA---------CCGTATGTCTATGATGGTTGAGACAC 277
|..|||||| |||| |||| |.||..| ||||
RBAM_023870__ 266 AGGTTGACGGAGCGAAAATGTCAGCCGT-TATCCGT----------ACAC 304
BSNT_03809___ 278 CTGATAAGGAAAAATGGGCTGCTGCGTATCGCATTCAGTCTGCTGGTGAA 327
.|||.||||||||||||||.|||.||||....||.|.|||| ||.|.|.|
RBAM_023870__ 305 ATGACAAGGAAAAATGGGCGGCTTCGTACAAAATCCGGTCT-CTTGAGGA 353
BSNT_03809___ 328 AAA----------GAACAGCTGTTATACATAGAACCAGGAATGTCATGTG 367
||| ||||||| |.|||||.||.|||...||..
RBAM_023870__ 354 AAAGAGACTCATTGAACAGC---------TTGAACCGGGGATGCGCTGCA 394
BSNT_03809___ 368 AGTTGACTGGTACATTGGAAGAACC-GAATCACGCAACTGTGCCGGGTGC 416
..||.||.||..|..|||||.|.|| |.| ||.||.||.||.||.||.|.
RBAM_023870__ 395 CATTTACAGGCTCTCTGGAACAGCCTGCA-CATGCGACGGTTCCCGGAGG 443
BSNT_03809___ 417 ATTTGATTATAACGAGTATCTTTA-TCGGCAGCATATTCATTGGAACTAC 465
.|||||||||||.||.|||||||| || .|||||.|||||.|||...|..
RBAM_023870__ 444 TTTTGATTATAAGGAATATCTTTACTC-TCAGCAGATTCACTGGTTATTT 492
BSNT_03809___ 466 TCTGTCACGTCTATTCAAAACTGCAGCGAACCTGAAAATTTTAA------ 509
||.||.||.||.||||| ||||.| ||||||.|..||
RBAM_023870__ 493 TCCGTGACTTCCATTCA-----GCAGTG----TGAAAAATCCAAACAGCC 533
BSNT_03809___ 510 ---GTACAAGGTGCTCAGCTTGAGAAAACATATCAT----ATCATTCACA 552
||..||..||||.|.|.|.||||||.||.|.|| |||||||..|
RBAM_023870__ 534 GCTGTTTAAACTGCTGAACATCAGAAAAAATTTGATTTCGATCATTCGGA 583
BSNT_03809___ 553 AACAGCCTTTTGCCT-CCTGA---TTCGGCAGGGATTGTACAGGCACTTA 598
|.|| |.| ||||| |||.||.||.|||||..|.||.||.|
RBAM_023870__ 584 ATCA--------CGTGCCTGAATCTTCCGCCGGAATTGTTGAAGCGCTGA 625
BSNT_03809___ 599 CAGTTGGTGACAGATTTTATGTGGAGGATGAAGTGCTTACCGCGTATCAA 648
|..|.|||||.|||||||.|.|.|||||.||..|.||.|..||.||||||
RBAM_023870__ 626 CCTTAGGTGAAAGATTTTCTATAGAGGACGATATACTGAGTGCATATCAA 675
BSNT_03809___ 649 AAGCTTGGTGTTGTCCATCTCTTGGCAATATCAGGACTCCACGTGGGGAT 698
||..|.||.||.||.|||.|..||||.||.||.|||.|.||.||.||..|
RBAM_023870__ 676 AATTTGGGAGTCGTTCATTTAATGGCGATTTCCGGAATGCATGTCGGTCT 725
BSNT_03809___ 699 TTTGACAGCAGGTTTGTTTTAT------ATCATGATTCGCCTTGGTATAA 742
|.|.||.||.||.||.|||||| |||| ||.|| ||..|.|
RBAM_023870__ 726 TATTACGGCGGGATTATTTTATGCTCTGATCA-GAATC-----GGGCTGA 769
BSNT_03809___ 743 CTAGAGAAAAGGCGTCAATTCTGTTGCTGTTATTTCTGCCGCTCTATGTG 792
|.||||||||.||...||||.||.|||||.|.|||.|||||.|.|||..|
RBAM_023870__ 770 CAAGAGAAAAAGCAGGAATTTTGCTGCTGCTGTTTTTGCCGGTGTATACG 819
BSNT_03809___ 793 ATGTTGACCGGCGCTGCTCCTTCAGTGCTACGCGCCGCTCTCATGTCGGG 842
.||.|||.|||.||.||.||.||.||..|.|||||..|.||||||..|||
RBAM_023870__ 820 CTGCTGAGCGGTGCCGCCCCATCCGTATTGCGCGCATCCCTCATGCTGGG 869
BSNT_03809___ 843 TGTTTACTTAGCTGGAAGCCTTGTCAAATGGCGTGTCCA---CTCTGCAA 889
..||||..|.||.||||..|||||.|||.|..|..|.|| |||||
RBAM_023870__ 870 ATTTTATATCGCCGGAACTCTTGTTAAACGCGGCATTCATTCCTCTG--- 916
BSNT_03809___ 890 CTGCAATTTGT--CTTTCATACATCGTCCTTCTGCTCTTCAATCCTTATC 937
||||| |||| ||.||.||..|..|.||.|||||.||.|||||||| |
RBAM_023870__ 917 CTGCA--TTGTCCCTGTCTTATCTGCTGCTCCTGCTGTTTAATCCTTA-C 963
BSNT_03809___ 938 ATCTCTTTG--AAGCCGGTTTTCAGCTATCGTTCGCCGTCAGTTTTTCTT 985
.|| ||||| |.||.||.||.|||||.||.||.||.||.||....||||
RBAM_023870__ 964 TTC-CTTTGGCAGGCGGGCTTCCAGCTTTCCTTTGCGGTAAGCGCCTCTT 1012
BSNT_03809___ 986 TAATTCTATCCTCTTCTATTTT----TCATCAGGTTAAAACCTCCTTG-- 1029
|||||||.||.||.||.||||| ..|.||||..|||.|...||||
RBAM_023870__ 1013 TAATTCTTTCATCCTCCATTTTAAAGAAAGCAGGGAAAAGCAGACTTGCC 1062
BSNT_03809___ 1030 GGGCAGCTGACAATTGTATCACTCATCGCTCAGCTGGGCTCGCTTCCGAT 1079
|| |||..|.||.|..|||.||||.||..||||..||||.||||||.|
RBAM_023870__ 1063 GG---GCTTGCGATGGCCTCATTCATTGCAGAGCTCAGCTCACTTCCGTT 1109
BSNT_03809___ 1080 TCTCCTATATCATTTTCATCAGTTTTCTATCATCAGCGTACCGATGAATA 1129
|||.||.|||||||||||.|||.||||..|..||||..|.||||||||||
RBAM_023870__ 1110 TCTTCTCTATCATTTTCAGCAGATTTCACTTGTCAGTTTTCCGATGAATA 1159
BSNT_03809___ 1130 TGTTGATGGTACCATTTTATACCTTCTGTATTT----TGCCGGGAGCTGT 1175
||.|||||||.|||||||||||.| ||||| |.||||...||||
RBAM_023870__ 1160 TGGTGATGGTGCCATTTTATACGT----TATTTGTCATTCCGGTTTCTGT 1205
BSNT_03809___ 1176 AGCA--GGTGTTCTTCTATTAAGTCTTTCCGTTTC------GTTTGGGAG 1217
|| |||.|.||||| |||||...|.|| | .||||||
RBAM_023870__ 1206 --CATCGGTTTCCTTCT------TCTTTTACTCTCAAGGCAG-ATGGGAG 1246
BSNT_03809___ 1218 ATTGTTT-TTCAGCTG----GTTTGATTTATTGAT-AAGC---TGGACCA 1258
|.||||| || || ||||||..|..|||| |||| ||.|..|
RBAM_023870__ 1247 AATGTTTGTT----TGGTATGTTTGACCTTGTGATGAAGCCTGTGCATGA 1292
BSNT_03809___ 1259 ATAGGCTAATCACAAACATTGCAG-AT--GTTGAAGTGTTCACGATTATG 1305
.| |.||.|||.| |||.| || |||||..|.||.|| ||||
RBAM_023870__ 1293 TT----TCATTACATA---TGCGGCATCCGTTGATTTATTTAC---TATG 1332
BSNT_03809___ 1306 ATCG---CACATCCTGCAC-CTGTTTTGCTTTTTTTATTCACGGTCACGA 1351
||.| ||.|.|||| || .|.|||..|||.||.|..|..||||
RBAM_023870__ 1333 ATTGTGTCAAAGCCTG-ACTTTCTTTCCCTTCTTCTGCTTGCGGT----- 1376
BSNT_03809___ 1352 TCATCCTATT----GCTTATGGCG--ATTGAAAAACGCTCCTTGTCGCAG 1395
.|||..|| ||||.|.||| .|||.||||.| |..|
RBAM_023870__ 1377 --TTCCGTTTTTACGCTTTTTGCGGCTTTGGAAAAGG---------GAGG 1415
BSNT_03809___ 1396 TTGATGGTAA----CCGGA----GGC----ATTTGCTGCACGGTGATGTT 1433
|| |..||| |.||| ||| .|||.||||.|||| ||
RBAM_023870__ 1416 TT--TTTTAAAACTCAGGAAATCGGCTCTTTTTTTCTGCGCGGT----TT 1459
BSNT_03809___ 1434 T--CTGCTCTTTATATA-----TCCGTGTCTTAGTTCCGAAGGAGAAGTG 1476
| || |.|||| ||| |||||.|.|.|||.|....|||||||.|
RBAM_023870__ 1460 TGGCT--TATTTA-ATATGCCGTCCGTATTTCAGTCCATGGGGAGAAGCG 1506
BSNT_03809___ 1477 GATATGATAGATATTGGACAGGGTGACAGCA-TGTTTGTAGGTGCTCCGC 1525
||||||.|.|||||.||.|||||.||| .|| |||||.||.|.||.||||
RBAM_023870__ 1507 GATATGCTTGATATCGGGCAGGGAGAC-TCACTGTTTATAAGCGCGCCGC 1555
BSNT_03809___ 1526 ATCAGC---GGGGGCGTGTCTTAA---TTGATACCGGCGGCACT--TTGT 1567
| |.|| |||..|| ||| |||||||.|| ||.|.| |||
RBAM_023870__ 1556 A-CCGCAAAGGGACCG-----TAATGGTTGATACAGG-GGGAGTGATTG- 1597
BSNT_03809___ 1568 CTTA-CTCGTCAGAGCCTTGGCGCGAAAAACAGCATCCGTTTTCACTGGG 1616
|||| |.|| .|||..|.|||...|||||||..||.||||.|||..|.||
RBAM_023870__ 1598 CTTATCCCG-GAGAATCATGGAAAGAAAAACGCCACCCGTATTCTATCGG 1646
BSNT_03809___ 1617 GGAAAAGGTGCTGATTCCGTTTTT-AACTGCTAAGGGAATCAAACAGCTT 1665
.||.|||||..|||||||.||||| |||.|..||||| .|.|||.||||.
RBAM_023870__ 1647 CGAGAAGGTTTTGATTCCATTTTTAAACGGAAAAGGG-GTGAAAAAGCTG 1695
BSNT_03809___ 1666 GACGCTTTAATTCTGACGCACGCTGACCAAGATCATATCGGAG-AGGCGG 1714
||.||..|.|||.|.||.||.||.||.||||||||.|||||.| ||.|||
RBAM_023870__ 1696 GATGCACTGATTTTAACCCATGCGGATCAAGATCACATCGGGGAAGCCGG 1745
BSNT_03809___ 1715 AG----ACTCTGCTGAAGCATCATAAAGTAAAGCG---------CCTCGT 1751
|| |.|| ||..||||||.|||.||.|| ||.|||
RBAM_023870__ 1746 AGTGTTAATC-----AAAAATCATAGAGTCAAACGGTTAATTGTCCCCGT 1790
BSNT_03809___ 1752 GATTCCGAAAGGGTTCGTTTCTGAACCTAAAGATGAGAAAGTGCTGCAGA 1801
| ||.|||||....|||||.||.|||.||||..|..|..|.|
RBAM_023870__ 1791 G---------GGATTCGTAAAAGAACCGAAGGATCAGAACATATTAAATA 1831
BSNT_03809___ 1802 CAGCCAGAGAAGAGGGAGTGACAA--------TTGAAGAGGTGAAGCGAG 1843
..||.|.|||| .|||| |||..||.|..|||||||
RBAM_023870__ 1832 TGGCGAAAGAA--------AACAACATTCCCGTTGCCGAAGCAAAGCGAG 1873
BSNT_03809___ 1844 GCGATGTATTGCA--AATAAAG-----GATTTGCAGTTCCATGTACTGTC 1886
|||| || |.||.|| |||.|.|||||.||.||.|||||
RBAM_023870__ 1874 GCGA-------CACCATTACAGCCGGTGATCTTCAGTTTCAGGTGCTGTC 1916
BSNT_03809___ 1887 ACCTGGAG-CACCTGATCCGGCA--AGCAAAAATAATTCCTCTCTCGTTC 1933
.|| |||| |..|||| |||.| ||.||||||.||||.||.||.||.|
RBAM_023870__ 1917 TCC-GGAGTCGTCTGA--CGGAAGGAGTAAAAATGATTCGTCACTGGTGC 1963
BSNT_03809___ 1934 TGTGGATGGAGACGGGCGGTATGAGCTGGATCTTGACGGGTGACCTGGAG 1983
|.||||.||.....|||||..||||||||.|.||||||||.|| |..||
RBAM_023870__ 1964 TTTGGACGGTTTTTGGCGGAGTGAGCTGGCTTTTGACGGGAGA--TTTAG 2011
BSNT_03809___ 1984 AA--AGAAGG-GGAACAGGAGGTGATGGACGTGTTTCCAAATATTAAAGC 2030
|| .||.|| |.|||| ||.|||.||.|...||.|||.|||.|.||.||
RBAM_023870__ 2012 AATCGGACGGCGAAACA-GAAGTGCTGAAAACGTATCCGAATCTGAAGGC 2060
BSNT_03809___ 2031 AGATGTCTTAAAGGTGGGGCACCATGGGAGCAAAGGCTCTACCGGTGAAG 2080
.|||.|.||.||||.|||.||.||.||.||||||.||||.||..||||||
RBAM_023870__ 2061 TGATATATTGAAGGCGGGTCATCACGGCAGCAAAAGCTCAACGAGTGAAG 2110
BSNT_03809___ 2081 AATTCATCCAACAGCTTCAGCCGAAAACGGCCATTATCTCAGCCGGGAAA 2130
..||..|..|.||||||||||||.||.||||..|.||.|||||.||.|||
RBAM_023870__ 2111 CCTTTTTGAAGCAGCTTCAGCCGGAAGCGGCGCTGATTTCAGCAGGAAAA 2160
BSNT_03809___ 2131 AACAATCGGTACCATCATCCTCATCAAGAAGTTCTGCAACTATTACAGAG 2180
.|.|||||.|||||||||||.|||.|||||||.|||.|.|..||..||..
RBAM_023870__ 2161 GAGAATCGATACCATCATCCGCATGAAGAAGTGCTGGATCGTTTGAAGGC 2210
BSNT_03809___ 2181 ACATTCT----ATCCGCGTGCTGCGAACAGATCAAAACGGAACGATCCAA 2226
..|.||| || |||||.||.||.|||...|.|||||||||.|||
RBAM_023870__ 2211 GTACTCTGTAAAT----GTGCTTCGCACCGATATCAGCGGAACGATTCAA 2256
BSNT_03809___ 2227 TATAGATACAAAAACAGAGTTGGAACCTTTTCTGTCTATCCTCCATATGA 2276
||.||||..|||||..|.|..|||||.|||||.||||..|||||||||||
RBAM_023870__ 2257 TACAGATTTAAAAAAGGCGCCGGAACGTTTTCCGTCTTCCCTCCATATGA 2306
BSNT_03809___ 2277 TACATCAGATATAA-CAGAG---ACGAACTAA----------------- 2304
||.|..||| || |||.| |.|||.|||
RBAM_023870__ 2307 TATAGAAGA---AACCAGGGCGCAAGAAGTAAAAAAGACTGCCGATTGA 2352
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