Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03826 and RBAM_024020
See
Amino acid alignment /
Visit
BSNT_03826 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_03826___yqeD.1.9828.seq
# -bsequence dna-align/RBAM_024020___yqeD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03826___yqeD-RBAM_024020___yqeD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03826___yqeD-RBAM_024020___yqeD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03826___yqeD
# 2: RBAM_024020___yqeD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 661
# Identity: 433/661 (65.5%)
# Similarity: 433/661 (65.5%)
# Gaps: 68/661 (10.3%)
# Score: 1310.5
#
#
#=======================================
BSNT_03826___ 1 ATGTTAAAAAAAGTAATAGGTATCCTTGTGATTATCGCTATCATTGCAG- 49
|||.|||||||.|.|.|..|| |||| .||..||||||||.|
RBAM_024020__ 1 ATGATAAAAAAGGGATTCAGT---CTTG------CCGTCATCATTGCTGT 41
BSNT_03826___ 50 --------TCGGTTTTTTTCAGAAAGAAGCTTGGCT-----TGAT--GCA 84
||||.|||.|.||.|||||.|..||||| |||| ||
RBAM_024020__ 42 CGTAATGATCGGCTTTATGCAAAAAGACGTCTGGCTCAGCATGATTCGC- 90
BSNT_03826___ 85 ATCAAAGCAGGAGGGATGTTTTCCGT-TTTATTTAGTATGCTGCTGATTG 133
||.||.||.||||.|.|||| .||| |.|||||.||.|||.|.|
RBAM_024020__ 91 ------GCGGGCGGCATGTATGCCGTGCTTA-TGAGTATCCTTCTGGTCG 133
BSNT_03826___ 134 CTGCCGATGTTTTTTTCCCAATAGTGCCGTTTGCTTTGGTTGCTGCTTTA 183
|.||.||.||.|||||.||.||.||.||.||.||..|..|.||.||.|||
RBAM_024020__ 134 CAGCTGACGTATTTTTTCCGATTGTTCCATTCGCCATTATCGCGGCCTTA 183
BSNT_03826___ 184 AATGGCGCAGTGTTCGGGACTGCAAATGGAATTTGGATTACACTGACCGG 233
||.||.||.||.|||||||.||.|||.||..|.|||||||||.||.|.||
RBAM_024020__ 184 AACGGAGCGGTTTTCGGGATTGTAAACGGGGTGTGGATTACATTGTCAGG 233
BSNT_03826___ 234 CTCAATGCTTGGTACTAT---ATTGCTGTTTTTTCTCGCCAGGTACAGTT 280
|.|.|||||.||.||.|| || ||||||||||||.|.|||||.|.|
RBAM_024020__ 234 CGCGATGCTCGGAACAATGGCAT---TGTTTTTTCTCGTCCGGTACGGAT 280
BSNT_03826___ 281 TTAGAGATTGGGCCAGAAAAAAAGTTCAGGCCTACCCTGCC--------A 322
|.|||||.||||||||||||||..|.|.|||.|||||.||| |
RBAM_024020__ 281 TCAGAGACTGGGCCAGAAAAAAGCTGCTGGCTTACCCGGCCGCGGCCCAA 330
BSNT_03826___ 323 TACAAAGCTACGAGGCTTCCTTCAACAAAAACGCTTTTACCGCTGTTTTA 372
||..|||.|.| .||.|.|||.| ||||.|||||.||.||..|.
RBAM_024020__ 331 TATGAAGATTC----ATTTCATCAGC----ACGCGTTTACGGCGGTGCTT 372
BSNT_03826___ 373 TTAGGAAGGCTGATACCAGTCATACCTTCCCTTATAATGAATGTGATCTG 422
||.||..|||||||.||..|.|||||.||.|||...||||||....||||
RBAM_024020__ 373 TTCGGGCGGCTGATTCCGATTATACCGTCGCTTGCCATGAATACCGTCTG 422
BSNT_03826___ 423 CGGTCTGAGCCAAGTTCGCTGGC--ATGTTTTTTTCTTTGCGTCTTTAAT 470
|||.|||||..|..|.||.|||| ||.|||||||| ||||||..|..|
RBAM_024020__ 423 CGGGCTGAGTAATATCCGATGGCCGATCTTTTTTTC--TGCGTCGGTGCT 470
BSNT_03826___ 471 AGGGAAAATCCCCAATATTGTTGTTGTCACTATTGCAGGCGC--CAACTT 518
.||.|||||.||.||.|||||..|.||.||..|.|||||||| || ||
RBAM_024020__ 471 CGGCAAAATTCCGAACATTGTGATCGTGACGGTCGCAGGCGCTTCA--TT 518
BSNT_03826___ 519 CACCAGCAATAAATTATTGTCTATCAGCATTTACGG--TGCATATATTCT 566
.||.|||||.|||.|..|||||.||.|.|||||.|| || |||||.||
RBAM_024020__ 519 TACAAGCAACAAACTGCTGTCTTTCGGGATTTATGGAATG--TATATGCT 566
BSNT_03826___ 567 GATCATCATGCTGGTCATTTATAAAAAGTTCCCTCATCTTCTAAAGGTGC 616
..||.|.|||..||||||||||||.|||||.||....|||.||||.....
RBAM_024020__ 567 CGTCTTAATGGCGGTCATTTATAAGAAGTTTCCCGGCCTTTTAAAAACAA 616
BSNT_03826___ 617 CAAAAAAATAA 627
|.|||||||.|
RBAM_024020__ 617 CGAAAAAATGA 627
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.