Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03888 and RBAM_024140

See Amino acid alignment / Visit BSNT_03888 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_03888___yrdA.1.9828.seq
#    -bsequence dna-align/RBAM_024140___yrdA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03888___yrdA-RBAM_024140___yrdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03888___yrdA-RBAM_024140___yrdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03888___yrdA
# 2: RBAM_024140___yrdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity:     446/504 (88.5%)
# Similarity:   446/504 (88.5%)
# Gaps:           3/504 ( 0.6%)
# Score: 2010.0
# 
#
#=======================================

BSNT_03888___      1 GTGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAGTTCGAAGCAGA     50
                     .|||||||||||||||||||||||||||||||||||||.||||||||.||
RBAM_024140__      1 ATGTTTCAAACCTTAGACCATTTTTTGAAATCTTGGGAATTCGAAGCCGA     50

BSNT_03888___     51 TGCTACACAGAAACTATTAAATAATCTGACTGATGAATCACTTAAACAAG    100
                     |||.|||||.|||||..|.|||.|||||||||||||||||||||||||||
RBAM_024140__     51 TGCGACACAAAAACTGCTGAATCATCTGACTGATGAATCACTTAAACAAG    100

BSNT_03888___    101 AAATAACTTCACAAAATTGGACTCTAGGCCGTATTGCTTGGCATACTGTT    150
                     ||||.|||||||||.||||||||.|.|||||||||||.|||||||||||.
RBAM_024140__    101 AAATCACTTCACAACATTGGACTTTGGGCCGTATTGCATGGCATACTGTC    150

BSNT_03888___    151 GCTGCCATTCGCATCATTACCTCAAACACAGACTTAACGTTCCATGCCCC    200
                     ||||||||||.|||||||||||||||||||||.||||||||.||.||.||
RBAM_024140__    151 GCTGCCATTCACATCATTACCTCAAACACAGATTTAACGTTTCACGCTCC    200

BSNT_03888___    201 AGCTGAAGATTATCCTGTTCCAACTTCGGCTCAGTTTATAGCTGACAGCT    250
                     .||.|||||||||||||||||..|.|||||.|.||||||.|||||.||.|
RBAM_024140__    201 GGCCGAAGATTATCCTGTTCCTGCATCGGCGCGGTTTATTGCTGAGAGTT    250

BSNT_03888___    251 ATCATCAAGCCAGTAATGCATTTGTACAGGCATTAAAAACCCAATGGACT    300
                     |||||||||||||||||||||||||||||||.||||||||.|||||||||
RBAM_024140__    251 ATCATCAAGCCAGTAATGCATTTGTACAGGCGTTAAAAACGCAATGGACT    300

BSNT_03888___    301 GACCATACACTTCAAGAACGTATCAACTTTATCGGACAACAATTGCCTAA    350
                     |||.||||||||||||||.||.||||||||||.||.||.||||||||.||
RBAM_024140__    301 GACGATACACTTCAAGAATGTGTCAACTTTATTGGTCAGCAATTGCCAAA    350

BSNT_03888___    351 CGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCACCATCGGGGAC    400
                     .||||||||||||||||||||||||||||||||||||||.|||||.||||
RBAM_024140__    351 TGGTTCACTTTTGATGTTTTTAATTCAACATCAAAACCATCATCGAGGAC    400

BSNT_03888___    401 AAATGACTGTTCTTATGAGACAAGCAGGTTTAACTGTTCCAGGTATTTAT    450
                     ||||||||||.|||||||||||||||||||||.|||||||.||||||||.
RBAM_024140__    401 AAATGACTGTCCTTATGAGACAAGCAGGTTTACCTGTTCCGGGTATTTAC    450

BSNT_03888___    451 GGTCCAGCAAAAGAAGAATGGGCAAAATTTGGTTTGGAAGCCCCGAAAAT    500
                     |||||.||||||||.||||||...|||||.|||||||||||.||||||..
RBAM_024140__    451 GGTCCGGCAAAAGAGGAATGGATTAAATTCGGTTTGGAAGCTCCGAAATA    500

BSNT_03888___    501 GTAA    504
                     |   
RBAM_024140__    501 G---    501


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.