Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02036 and RBAM_024200

See Amino acid alignment / Visit BSNT_02036 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:45
# Commandline: needle
#    -asequence dna-align/BSNT_02036___manP.1.9828.seq
#    -bsequence dna-align/RBAM_024200___manP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02036___manP-RBAM_024200___manP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02036___manP-RBAM_024200___manP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02036___manP
# 2: RBAM_024200___manP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1965
# Identity:    1618/1965 (82.3%)
# Similarity:  1618/1965 (82.3%)
# Gaps:          18/1965 ( 0.9%)
# Score: 6698.5
# 
#
#=======================================

BSNT_02036___      1 ATGAAACTGTTAGCGATTACATCTTGTCCGAATGGAATCGCCCATACGTA     50
                     |||||||||||||||||||||||.||||||||.||.||.|||||||||||
RBAM_024200__      1 ATGAAACTGTTAGCGATTACATCATGTCCGAACGGCATTGCCCATACGTA     50

BSNT_02036___     51 TATGGCAGCGGAAAATCTGCAAAAAGCTGCTGACAGACTGGGCGTT-AGC     99
                     ||||||.||.||||||.|.||||||||.||.|.||||.|.|||||| || 
RBAM_024200__     51 TATGGCTGCTGAAAATTTACAAAAAGCAGCCGGCAGATTAGGCGTTGAG-     99

BSNT_02036___    100 ATCAAAGTTGAGACCCAGGGGGGAATTGGTGTCGAAAATAAGCTAACCGA    149
                     ||||||||.||.||||||||||||||.||.||.|||||||.|||.|||||
RBAM_024200__    100 ATCAAAGTGGAAACCCAGGGGGGAATCGGGGTGGAAAATAGGCTGACCGA    149

BSNT_02036___    150 AGAGGAAATTCGCGAAGCGGACGCAATCATTATTGCTGCAGACCGCTCGG    199
                     |||||||||.||.|||||.||||||||||||||.||.||.|||||.||||
RBAM_024200__    150 AGAGGAAATCCGGGAAGCAGACGCAATCATTATCGCGGCGGACCGTTCGG    199

BSNT_02036___    200 TAAACAAAGACCGGTTTATAGGCAAAAAACTGCTGTCTGTGGGGGTACAG    249
                     |.|||||||||||.||....||.|||||.||||||.|.||.|||||.|||
RBAM_024200__    200 TGAACAAAGACCGATTCGCGGGAAAAAAGCTGCTGGCCGTCGGGGTTCAG    249

BSNT_02036___    250 GACGGCATCCGCAAACCGGAAGAATTGATTCAAAAAGCTCTTAACGGGGA    299
                     ||.|||||||||||||||||||||||.|||||||||||.||||.|.|.||
RBAM_024200__    250 GAAGGCATCCGCAAACCGGAAGAATTAATTCAAAAAGCGCTTAGCAGTGA    299

BSNT_02036___    300 TATACCGGTCTATCGTTCCGCTACAAAATCGGAGCCCGGTAATCATCAGG    349
                     ..|.||||||||||..||.|||.|||||.|.||..|||..|.|||.||||
RBAM_024200__    300 AGTGCCGGTCTATCAATCTGCTTCAAAAGCTGAATCCGCAAGTCAGCAGG    349

BSNT_02036___    350 AGAAGAAACAAAATCCAATTTACCGTCATTTAATGAACGGCGTTTCATTT    399
                     ..||.||||||||.||.|||||||||||||||||||||||||||||.|||
RBAM_024200__    350 GCAAAAAACAAAACCCGATTTACCGTCATTTAATGAACGGCGTTTCTTTT    399

BSNT_02036___    400 ATGGTTCCTTTCATTGTTGTCGGCGGATTATTGATAGCGGTTGCATTAAC    449
                     |||||||||||||||||.|||||||||||||||||||||||||||||.||
RBAM_024200__    400 ATGGTTCCTTTCATTGTCGTCGGCGGATTATTGATAGCGGTTGCATTGAC    449

BSNT_02036___    450 GCTTGGAGGGGAGAAAACACCTAAAGGCTTAGTTATTCCGGATGATTCCT    499
                     |||||||||.||.||||||||.||.||||||||.||||||||.||.||.|
RBAM_024200__    450 GCTTGGAGGAGAAAAAACACCAAAGGGCTTAGTCATTCCGGACGAGTCTT    499

BSNT_02036___    500 TCTGGAAAACGATTGAACAGATCGGCAGTGCTTCATTTTCATTTATGATT    549
                     |.|||||.||||||||||||||||||||||||||.||||||||.|||||.
RBAM_024200__    500 TTTGGAAGACGATTGAACAGATCGGCAGTGCTTCTTTTTCATTCATGATC    549

BSNT_02036___    550 CCGATTTTAGCCGGCTATATCGCCTATAGCATCGCTGATAAACCGGGGCT    599
                     ||||||||||||||.||||||||.|..||||||||||||||.||||||||
RBAM_024200__    550 CCGATTTTAGCCGGGTATATCGCGTTCAGCATCGCTGATAAGCCGGGGCT    599

BSNT_02036___    600 TGTGCCAGGGATGATCGGCGGTTATATTGCGGCGACTGGAAGTTTTTATG    649
                     |||.||.||.|||||||||||.|||||||||||..|.||.||.|||||.|
RBAM_024200__    600 TGTCCCCGGAATGATCGGCGGATATATTGCGGCATCCGGCAGCTTTTACG    649

BSNT_02036___    650 ACAGCGCAAGCGGCGCCGGATTCCTCGGGGGGATTATTGCCGGGTTTTTG    699
                     ||||.|||||||||||.|||||.||.||.||.||.|||||.||.||||||
RBAM_024200__    650 ACAGTGCAAGCGGCGCAGGATTTCTTGGAGGAATCATTGCGGGATTTTTG    699

BSNT_02036___    700 GCCGGATACGCGGCACTTTGGATCAAAAAATTAAAAGTTCCAAAAGCCAT    749
                     ||.|||||.|||||.|||.|.||||||||||..||||||||.|||||.||
RBAM_024200__    700 GCGGGATATGCGGCGCTTGGAATCAAAAAATGTAAAGTTCCTAAAGCAAT    749

BSNT_02036___    750 CCAGCCGATTATGCCGATTATTATTATTCCGGTGTTTGCATCACTGATTG    799
                     .|||||||||||||||||.||||||||||||||||||||.||||||||.|
RBAM_024200__    750 ACAGCCGATTATGCCGATCATTATTATTCCGGTGTTTGCCTCACTGATCG    799

BSNT_02036___    800 TAGGTTTAGCGTTTGTATTTTTGATAGGCGCGCCTGTAGCTCAAATTTTC    849
                     |.|||||.||||||||.|||.||||.|||||.||.||.|||||.||||||
RBAM_024200__    800 TCGGTTTGGCGTTTGTCTTTCTGATCGGCGCCCCCGTCGCTCATATTTTC    849

BSNT_02036___    850 GCCTCTTTAACAGTTTGGCTGGCGGGGATGAAAGGGTCGAGCTCGATCCT    899
                     ||.||.|||||.||||||||.|||||.||||||||.|||||.||.||.||
RBAM_024200__    850 GCATCATTAACGGTTTGGCTTGCGGGAATGAAAGGTTCGAGTTCAATTCT    899

BSNT_02036___    900 TCTGGCATTGATTTTAGGAGCGATGATCTCATTTGATATGGGCGGTCCCG    949
                     ||||||||||||||||||||||||||||||.|||||||||||.||.||||
RBAM_024200__    900 TCTGGCATTGATTTTAGGAGCGATGATCTCCTTTGATATGGGAGGACCCG    949

BSNT_02036___    950 TAAATAAGGTGGCGTTTCTGTTTGGATCGGCAATGATTGGAGAAGGGAAT    999
                     ||||.||||||||.|||||.||.||||||||||||||.||||||||.|||
RBAM_024200__    950 TAAACAAGGTGGCCTTTCTTTTCGGATCGGCAATGATCGGAGAAGGAAAT    999

BSNT_02036___   1000 TATGAAATTATGGGACCAATTGCTGCCGCCATTTGTATCCCCCCGATTGG   1049
                     ||||||||.|||||.||.|||||.|...||||||||||.||.|||||.||
RBAM_024200__   1000 TATGAAATCATGGGCCCGATTGCCGTTTCCATTTGTATACCGCCGATAGG   1049

BSNT_02036___   1050 CCTTGGCATTGCGACGTTTTTAGGAAAAAGAAAATTCGAGGCATCTCAAA   1099
                     .|||||.|||||.|||||||||||||||||||||||||..||..|..|||
RBAM_024200__   1050 GCTTGGGATTGCAACGTTTTTAGGAAAAAGAAAATTCGCCGCCGCAGAAA   1099

BSNT_02036___   1100 GAGAAATGGGGAAAGCGGCATTTACGATGGGTCTTTTCGGCATTACTGAA   1149
                     .|||||||||.|||||..|||||||||||||.||||||||.||.||.|||
RBAM_024200__   1100 AAGAAATGGGAAAAGCATCATTTACGATGGGCCTTTTCGGTATCACGGAA   1149

BSNT_02036___   1150 GGAGCGATTCCATTTGCGGCGCAGGACCCTCTGCGCGTTATTCCAAGTAT   1199
                     |||||.||||||||||||||.||.|||||.||.||.||.||.||.|||||
RBAM_024200__   1150 GGAGCCATTCCATTTGCGGCCCAAGACCCCCTTCGTGTGATCCCGAGTAT   1199

BSNT_02036___   1200 TATGGCAGGCTCAATGACAGGTTCTGTGATAGCCATGATTGGCAATGTGG   1249
                     ||||||.||.||.|||||.||.||.||||||||.|||||.|||.||||||
RBAM_024200__   1200 TATGGCGGGTTCTATGACCGGATCGGTGATAGCGATGATCGGCCATGTGG   1249

BSNT_02036___   1250 GAGACAGAGTGGCGCACGGCGGACCTATCGTTGCAGTGCTTGGCGCAGTT   1299
                     |.|||||||||||.||||||||.||.||||||||.||.|||||.|||||.
RBAM_024200__   1250 GGGACAGAGTGGCACACGGCGGCCCCATCGTTGCTGTACTTGGAGCAGTA   1299

BSNT_02036___   1300 GATCATGTCTTGATGTTTTTTATTGCTGTGATTGCAGGATCTCTTGTCAC   1349
                     ||||||||..|||||||||||||.|||||.|..|||||.|||||||||||
RBAM_024200__   1300 GATCATGTACTGATGTTTTTTATCGCTGTAACAGCAGGCTCTCTTGTCAC   1349

BSNT_02036___   1350 TGCTCTGTTCGTCAATGTACTAAAAAAGGATATTACGGCG---TCTCCTG   1396
                     .||||||||.||.||||||||.||.||.|||||   ||||   ||.||.|
RBAM_024200__   1350 CGCTCTGTTGGTTAATGTACTGAAGAAAGATAT---GGCGAAATCCCCCG   1396

BSNT_02036___   1397 TGCTCAGTGA--AACTGCACCGACCTCCGCGCCAAGTGAAGCTGCTGCAG   1444
                     .||.|.|.||  ..|||  |||.|...|||.||||.|||||||||.||.|
RBAM_024200__   1397 CGCCCGGCGAGGTGCTG--CCGTCTGACGCACCAAATGAAGCTGCAGCGG   1444

BSNT_02036___   1445 CAAATGAAATAAAACAGCCAATTC------AAAGCCAAAAAGCTGAGATG   1488
                     ||||.||||.|||..|.|||..||      |.||||.||||||.|.||||
RBAM_024200__   1445 CAAAAGAAACAAAGGAACCATCTCAGGCTGACAGCCGAAAAGCCGGGATG   1494

BSNT_02036___   1489 TCGGAATTTAAAAAACTGACAGACATAATCAGCCCGGAATTAATTGAACC   1538
                     .|.|||.|.|||||||||||.|||||.|||||..||||.||.||||||||
RBAM_024200__   1495 ACCGAAATCAAAAAACTGACTGACATTATCAGTACGGACTTGATTGAACC   1544

BSNT_02036___   1539 AAATTTATCGGGGGAAACGAGGGATGACATCATAGATGAATTGATTCAGA   1588
                     ..|||||||.||.|||||||||||||||||.||.||||||.||||...||
RBAM_024200__   1545 GCATTTATCCGGCGAAACGAGGGATGACATTATCGATGAAATGATCGCGA   1594

BSNT_02036___   1589 AATTGTCCCGAAGAGGTGCGCTGCTTTCAGAGAGCGGGTTTAAACAAGCC   1638
                     ||.|||||||.|.||||..||||||.||.||.|||||.|||||.||.|||
RBAM_024200__   1595 AAATGTCCCGTAAAGGTATGCTGCTGTCTGACAGCGGATTTAAGCAGGCC   1644

BSNT_02036___   1639 ATTTTGAATCGTGAACAACAGGGAACAACGGCGATTGGCATGAATATCGC   1688
                     |||||||..||.|||||.||||||||.||||||||.||.|||||||||||
RBAM_024200__   1645 ATTTTGAGCCGGGAACAGCAGGGAACCACGGCGATAGGTATGAATATCGC   1694

BSNT_02036___   1689 GATTCCGCACGGAAAGTCTGAGGCGGTCAGGGAGCCGAGTGTTGCCTTTG   1738
                     .||||||||||||||||||||.||.||||....||||.||||.||.||.|
RBAM_024200__   1695 CATTCCGCACGGAAAGTCTGAAGCCGTCAAAACGCCGGGTGTCGCATTCG   1744

BSNT_02036___   1739 GGATCAAACGATCAGGCGTTGATTGGAATAGCCTGGATGGATCAGAAGCT   1788
                     |.||.|.|||.||.||.|||||.|||||.|||||.|||||.||.||.||.
RBAM_024200__   1745 GAATAAGACGTTCGGGTGTTGACTGGAACAGCCTTGATGGTTCTGATGCA   1794

BSNT_02036___   1789 AAATTAATCTTTATGATTGCTGTACCGAAAGAGAGCAGGGGAAACCAGCA   1838
                     |||.|.||.|||||||||||.||||||||.||.|||.|.|||||.|||||
RBAM_024200__   1795 AAACTGATTTTTATGATTGCCGTACCGAAGGAAAGCGGCGGAAATCAGCA   1844

BSNT_02036___   1839 TCTCAAAATACTGCAGATGCTATCTCGAAAGCTAATGGATGACAATTATA   1888
                     |||.||||||.||||||||.||||.|||||.||.||||||||||..|||.
RBAM_024200__   1845 TCTGAAAATATTGCAGATGTTATCCCGAAAACTGATGGATGACAGCTATC   1894

BSNT_02036___   1889 GGGAGCGGCTGCTCTCCGTGCAAACAACAGAAGAAGCATACAAGCTGCTA   1938
                     ||||..|||||||||||||.||.||||.||||||.||.||..||||.||.
RBAM_024200__   1895 GGGAAAGGCTGCTCTCCGTTCAGACAAAAGAAGAGGCGTATGAGCTTCTG   1944

BSNT_02036___   1939 GAAGAAATCGAATAA   1953
                     |||||||||||||||
RBAM_024200__   1945 GAAGAAATCGAATAA   1959


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