Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02035 and RBAM_024210
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_02035___manR.1.9828.seq
# -bsequence dna-align/RBAM_024210___manR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02035___manR-RBAM_024210___manR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02035___manR-RBAM_024210___manR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02035___manR
# 2: RBAM_024210___manR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1969
# Identity: 1575/1969 (80.0%)
# Similarity: 1575/1969 (80.0%)
# Gaps: 38/1969 ( 1.9%)
# Score: 6308.5
#
#
#=======================================
BSNT_02035___ 1 ATGGAATACATAAATACAAGACAAAAAGAGATTTTGTATCTGTTGTTATC 50
|||.|||||||.|||.||||.||.|||.||||||||||||||||||||||
RBAM_024210__ 1 ATGAAATACATGAATTCAAGGCAGAAAAAGATTTTGTATCTGTTGTTATC 50
BSNT_02035___ 51 TGAACCTGATGACTATTTAGTTGTGCAAGATTTCGCAGATAGGGTACAGT 100
|||||||||||||||.|||||||||||||||||||||||.|||||.|..|
RBAM_024210__ 51 TGAACCTGATGACTACTTAGTTGTGCAAGATTTCGCAGACAGGGTCCGCT 100
BSNT_02035___ 101 GTTCTGAAAAAACAATCCGGAATGATTTGAAAGTGATCGAGGATTATCTC 150
|||||||||||||.|||.||||||||||||||..|||.||.||||..||.
RBAM_024210__ 101 GTTCTGAAAAAACGATCAGGAATGATTTGAAAACGATTGAAGATTTCCTG 150
BSNT_02035___ 151 AATGAGCATTCTCATGCACAGCTTATTCGAAAACCAGGGTTGGGCGTTTA 200
|||||.|||.||||.||.|||||.||.||.|||||.||.||.|||||.||
RBAM_024210__ 151 AATGAACATGCTCAAGCTCAGCTGATCCGCAAACCGGGATTAGGCGTCTA 200
BSNT_02035___ 201 TTTATATATAGAAGAACAAGAAAGGACCTGGCTAAGCCAACAATTACATA 250
||||.|||||...|||||.||||||.|..||.||||||..|||.|..|||
RBAM_024210__ 201 TTTACATATATCTGAACAGGAAAGGTCACGGTTAAGCCGGCAAATTTATA 250
BSNT_02035___ 251 CTGAACATTTTTCTTCTAGGCAGCGGAGCGATGAAGAAAGAATGCTGCAC 300
.|||.||.|||.|.|..|||||...||.|||||||||||||||.||.|||
RBAM_024210__ 251 ATGAGCACTTTACGTGCAGGCACAAGACCGATGAAGAAAGAATACTTCAC 300
BSNT_02035___ 301 ATTGCTTATGACTTATTAATGAATCCGAAGCCTGTTTCCGCAAAAGACAT 350
||.||||||||.||||||||||||.|.|||||.||||||||||||||.||
RBAM_024210__ 301 ATCGCTTATGATTTATTAATGAATTCAAAGCCCGTTTCCGCAAAAGAAAT 350
BSNT_02035___ 351 TGCTGCTCGGCATTTTGTCAATCGATCTTCCATAAAAAAGGATTTATACG 400
||||||.|.|||||||||.||..||.|||||||.|||||||||.||...|
RBAM_024210__ 351 TGCTGCACAGCATTTTGTAAACAGAGCTTCCATTAAAAAGGATGTAAGTG 400
BSNT_02035___ 401 CAGTAGAAGAGTGGCTGAAGCGTTTTGATCTCACGCTGGTTTCTAGGCAG 450
|.||.|||||||||||||||||.||||||||||..||||||||||..|||
RBAM_024210__ 401 CGGTTGAAGAGTGGCTGAAGCGATTTGATCTCATACTGGTTTCTAAACAG 450
BSNT_02035___ 451 CGGCTTGGATTAAAGGTTGAAGGGAACGAAAGAAATAAAAGAAAGGCATT 500
|||||.||.||||||.||||||||.||||||.|||.||||||||.|||||
RBAM_024210__ 451 CGGCTCGGCTTAAAGATTGAAGGGGACGAAAAAAACAAAAGAAAAGCATT 500
BSNT_02035___ 501 GGCAAGAATATCTGATTTGATCCACAATACAGCGTTTACCAGCCAATTTA 550
|||..||||.||.||||||||..|.|||.|.|..|||||.||||||||||
RBAM_024210__ 501 GGCGCGAATTTCAGATTTGATTGATAATGCGGAATTTACAAGCCAATTTA 550
BSNT_02035___ 551 TTAAAAGTAAGTTTTTACATTATGAAGTAGACTTTGTGACGAAAGAAATC 600
|.|||||||||||||||..||||||||..||||||||||..|||||||||
RBAM_024210__ 551 TAAAAAGTAAGTTTTTAAGTTATGAAGCGGACTTTGTGAGAAAAGAAATC 600
BSNT_02035___ 601 AAATCACTACAAAAAAAGCATTCCCTCTATTTCACAGACGAAACGTTTGA 650
||.|.|.||||||||||.|||||..|||||||.||.||.|||||.|||||
RBAM_024210__ 601 AAGTTATTACAAAAAAACCATTCTATCTATTTTACGGATGAAACATTTGA 650
BSNT_02035___ 651 AAGTTTGCTGCTGCATACATTGTTAATGGTCCGCCGCATCAAAATGAAGC 700
||||||||||||||||||||||.|.|...|||||||.|||||||||||.|
RBAM_024210__ 651 AAGTTTGCTGCTGCATACATTGCTGACTATCCGCCGTATCAAAATGAAAC 700
BSNT_02035___ 701 AGCCG------ATTTCATTGTCCCCAAAAGAAATGGCGGCAGTAAAAAAG 744
||||| ||||| || |||.|.|..|||..||.|||||||||
RBAM_024210__ 701 AGCCGGTCGCCATTTC--TG----CAAGACAGCTGGACGCGGTAAAAAAG 744
BSNT_02035___ 745 AAGAAAGAATATCAATGGACATTTGCTTGTTTACAACGGCTCGAACCGGT 794
||||||||||||.||||||||.|.|||||||||.|||||||.||.|||||
RBAM_024210__ 745 AAGAAAGAATATGAATGGACACTGGCTTGTTTAAAACGGCTTGAGCCGGT 794
BSNT_02035___ 795 TTTTGCAATCCGCTTCCCTGAAGAAGAAGCCGTGTACTTAACATTACATA 844
.|||||.|||||.||.|||||.|||||||||||.||.|||||.|||||||
RBAM_024210__ 795 ATTTGCCATCCGGTTTCCTGAGGAAGAAGCCGTCTATTTAACTTTACATA 844
BSNT_02035___ 845 TATTGGGCGGTAAAGTTCGTTATCCATTGCAGACAGAAGAGA------AC 888
||.|.|||||.|||||.||.|||||||.||||..||||.||| |.
RBAM_024210__ 845 TAATAGGCGGGAAAGTCCGCTATCCATCGCAGCTAGAAAAGAAGCTTGAT 894
BSNT_02035___ 889 CTTGAAAATGCTGTGCTTCCTAAGGTTGTAGGGCATTTAATCAATCGTGT 938
||||||.||.|||.||||.|.||.||.||..|||||||.|||||||||||
RBAM_024210__ 895 CTTGAAGATTCTGAGCTTTCCAAAGTCGTCAGGCATTTGATCAATCGTGT 944
BSNT_02035___ 939 TTCAGAGCTGAAAATGATGGATTTTCATAAGGATCAGGATTTGATCAATG 988
||||||.|||.|||||.||||||||.||||.||.|||||..|||||||.|
RBAM_024210__ 945 TTCAGAACTGCAAATGCTGGATTTTTATAAAGACCAGGAACTGATCAACG 994
BSNT_02035___ 989 GTTTGAACATTCATCTCAATACTGTGCTACAACGGCTGAGCTACGATCTT 1038
|.|||||||||||||||.||.|.|||.|..|.|||||||||||.|||||.
RBAM_024210__ 995 GATTGAACATTCATCTCGATCCGGTGTTGAAGCGGCTGAGCTATGATCTC 1044
BSNT_02035___ 1039 TCTGTAGCAAATCCTATGCTCAATGACATCAAAAAGATGTACCCTTATTT 1088
|||||..|||||||.|||||..|.|||||||||||.||||||||||||||
RBAM_024210__ 1045 TCTGTTTCAAATCCCATGCTTCACGACATCAAAAAAATGTACCCTTATTT 1094
BSNT_02035___ 1089 GTTCCACCTCATCATTGATGTTTTGGAAGACATCAATCATACTTTTGATC 1138
|||.||.||.||||||||.|||||.||||||||||||||.||.|||||||
RBAM_024210__ 1095 GTTTCATCTTATCATTGACGTTTTAGAAGACATCAATCAAACATTTGATC 1144
BSNT_02035___ 1139 TTCAAATTCCTGAGGAAGAGGCAGCATATTTGACATTGCATTTTCAGGCA 1188
||.|.||||||||.||||||||.||.||||||||..||||||||||||||
RBAM_024210__ 1145 TTTATATTCCTGAAGAAGAGGCGGCCTATTTGACGCTGCATTTTCAGGCA 1194
BSNT_02035___ 1189 GCGATCGAACGGATGCAGTGCAGCAGCGAGACA--CATA-----AAAAGG 1231
||||||||||||.||| || |||.||| |||| ||||||
RBAM_024210__ 1195 GCGATCGAACGGCTGC------GC--CGAAACAGTCATAACCCTAAAAGG 1236
BSNT_02035___ 1232 -CGATTATCGTCTGCCACATGGGGATTGGGATGTCACAATTGCTGCGGAC 1280
||||.|||||||||||.|||||.|||||.||||||||||||||||||||
RBAM_024210__ 1237 ACGATCATCGTCTGCCATATGGGCATTGGCATGTCACAATTGCTGCGGAC 1286
BSNT_02035___ 1281 AAAAATTGAACGGAAATGTCATCAAATCGCTGTAATGGCCTGTATTGCAA 1330
.|||||||||||.||||.||||.|.||..|.||||..|.||||||.||||
RBAM_024210__ 1287 TAAAATTGAACGCAAATTTCATTACATTACGGTAAAAGACTGTATCGCAA 1336
BSNT_02035___ 1331 AGGCCGATTTAAAGGATTATATCAAAAAGCATGAGGATATTGATCTTGTC 1380
|.||.||..|.|..||.|||||||||||||||.|.|||||.|||.|.|||
RBAM_024210__ 1337 AAGCGGAGCTGACAGAGTATATCAAAAAGCATAAAGATATAGATTTCGTC 1386
BSNT_02035___ 1381 ATATCCACCATTGCGC-TGGAGAATATAACGGTTCCCCATATTGTTGTAT 1429
||.||.||.||.|.|| |||| |||.|||||.|.||.||||||||.||||
RBAM_024210__ 1387 ATTTCTACGATAGGGCTTGGA-AATGTAACGATCCCTCATATTGTCGTAT 1435
BSNT_02035___ 1430 CTCCGCTTTTAGAGCCTGGCGAAGAGAAGAAATTAAGTGCGTTTATACGT 1479
|.||||||||.|||.|||..||.||.|||||..|.||.||.|||.|.|..
RBAM_024210__ 1436 CACCGCTTTTGGAGTCTGCTGATGAAAAGAAGCTCAGCGCATTTCTGCAA 1485
BSNT_02035___ 1480 CAGCTGGGCGAATCACACCGCCAAAAACAAAAAACGTTTCAGATGCTGAA 1529
|||||.|....||||||.||||...|.||||||||||||.|.||||||||
RBAM_024210__ 1486 CAGCTTGATATATCACATCGCCGGGAGCAAAAAACGTTTAAAATGCTGAA 1535
BSNT_02035___ 1530 CAATACGACTCCTTTTTTGGTTTTTTTGCAGCAGGAGGCAGAGCACCGCT 1579
|.||||||||||.|||.|.||||||||.|||||.|||.||||||||||.|
RBAM_024210__ 1536 CGATACGACTCCGTTTCTCGTTTTTTTACAGCAAGAGACAGAGCACCGTT 1585
BSNT_02035___ 1580 ACAAGTTAATCGAACAGCTGGCGACA-GCTTTGTTTGAGAAAGGCTATGT 1628
|..||.|.||.|||.|||||||| || |||||||.|||.|||||||||||
RBAM_024210__ 1586 ATCAGGTCATTGAAAAGCTGGCG-CAGGCTTTGTATGAAAAAGGCTATGT 1634
BSNT_02035___ 1629 TGATAAGGACTATGCGGTTCATGTGGTGATGAGGGAAAAAATGTCGGCGA 1678
.||.||.||.||||...||||||..||.|||||.||||||||||||||||
RBAM_024210__ 1635 AGAAAAAGAGTATGGCATTCATGCAGTAATGAGAGAAAAAATGTCGGCGA 1684
BSNT_02035___ 1679 CAAATATTGGATCAGGCATTGCCATTCCTCATGCAAACGCTAAATTTATT 1728
|||||||.||..|.||.||||||||.|||||.||.|||.||||||.|||.
RBAM_024210__ 1685 CAAATATCGGGGCGGGTATTGCCATCCCTCACGCGAACTCTAAATATATC 1734
BSNT_02035___ 1729 AAACAATCAGCAATCGCGATTGCCACATTAAAGGAGCCGCTTGAATGGGG 1778
|||||||||||.||.||.||.|||||.|||||.||||||.||||||||||
RBAM_024210__ 1735 AAACAATCAGCCATTGCAATCGCCACCTTAAAAGAGCCGATTGAATGGGG 1784
BSNT_02035___ 1779 AAATGAAAAAGTTTCGCTCGTTTTTATGCTGGCTGTCAAACACGAGGATC 1828
.|..|||||.||.|||.|||||||||||||.||||||||||||||.||||
RBAM_024210__ 1785 GACAGAAAAGGTGTCGGTCGTTTTTATGCTTGCTGTCAAACACGAAGATC 1834
BSNT_02035___ 1829 AAACCATGACAAAGCAGCTGTTTAGCGAGCTTTCATATCTTAGCGAGCAG 1878
|||.||.|..||||||..|.||.||.||||||||.|||||||||||||||
RBAM_024210__ 1835 AAAACAAGGTAAAGCAATTATTCAGTGAGCTTTCCTATCTTAGCGAGCAG 1884
BSNT_02035___ 1879 CCGGCCTTCGTCCAGAAGCTGACGAAAGAAGCCAATGTCATGACATTTTT 1928
|||||.||..|.||.||.||||||.|||||...|||||.||||..|||||
RBAM_024210__ 1885 CCGGCATTTATTCAAAAACTGACGGAAGAAAAAAATGTGATGATGTTTTT 1934
BSNT_02035___ 1929 ATCTCATTTGGATTATTAA 1947
|||..||||..|.||||||
RBAM_024210__ 1935 ATCGTATTTAAACTATTAA 1953
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