Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03936 and RBAM_024260
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:13
# Commandline: needle
# -asequence dna-align/BSNT_03936.1.9828.seq
# -bsequence dna-align/RBAM_024260___yrhJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03936-RBAM_024260___yrhJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03936-RBAM_024260___yrhJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03936
# 2: RBAM_024260___yrhJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3328
# Identity: 1624/3328 (48.8%)
# Similarity: 1624/3328 (48.8%)
# Gaps: 1226/3328 (36.8%)
# Score: 5217.0
#
#
#=======================================
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 1 ATGAAACAGCTAAGCGCTATACCACAGCCGAAAACATACGGGCCTCTGAA 50
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 51 AAATCTCCCTCACTTGGAAAAAGAAAAACTGTCACAATCGCTTTGGAAAA 100
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 101 TTGCCGAAGAATACGGCCCGATCTTTCGTTTTGAATTTCCGAGCTCTGTC 150
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 151 GGGGTCTTCGTCTCAGGCCGCGAGCTCGCGGCAGAAGTCTGTGATGAAAA 200
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 201 GCGATTTGACAAAAATCTCAGCAAAGCCTTGCTGAAGGTCCGTGAGTTTG 250
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 251 GCGGTGACGGACTATTTACGAGCTGGACTCACGAAAAGAATTGGCAGAAA 300
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 301 GCGCATCGGATTTTATTGCCGAGCTTCAGCCAGAAGGCGATGAAAGGCTA 350
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 351 TCATTCAATGATGCTGGATATTGCCATGCAGCTCGTGCAGAAGTGGAGCA 400
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 401 GATTAAATCCGAATGAAGAAATTGACGTTGCCGAAGATATGACGCGCCTG 450
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 451 ACGCTGGATACAATCGGCCTGTGCGGATTTCATTACCGCTTTAACAGCTT 500
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 501 TTACCGCGACACACAGCATCCTTTTATCACAAGTATGCTTCGTGCGCTGC 550
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 551 AGGAGGCAATGCGCCAATCACAAAGACACAGCCTGCAGGACAAGCTGATG 600
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 601 ATCAAAACGAGACATCAGTTCCAGCAGGATATTGAAGAGATGAATTCGCT 650
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 651 TGTAGACCGGATCATCGCTGAGCGGAGGGAAAATCCGGATGAGAATCTGT 700
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 701 CTGACCTTTTAGCATTGATGCTTGAAGCGAAAGACCCTGTAACAGGGGAA 750
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 751 AGGCTGGATGATGAAAATATCCGTTATCAAATCATTACCTTTTTGATCGC 800
BSNT_03936 0 -------------------------------------------------- 0
RBAM_024260__ 801 TGGGCATGAAACCACAAGCGGGCTGCTTTCTTTTGCGATATACTGCCTGC 850
BSNT_03936 1 -----------------------------------------------GTG 3
|||
RBAM_024260__ 851 TGAAAAATAAAGATAAATTGAAAAAAGCCGTTCAGGAAGCCGAGCGGGTG 900
BSNT_03936 4 TTAACGGATGACACGCCTGAATATAAACAAATCCAGCAGCTCAAATACAC 53
.|.||||..||.||.|||||||||||.||.||.||||||||.|.|||.|.
RBAM_024260__ 901 CTGACGGGAGAGACCCCTGAATATAAGCAGATTCAGCAGCTGACATATAT 950
BSNT_03936 54 TCGGATGGTTTTAAATGAAACCCTCAGACTGTATCCAACAGCTCCGGCTT 103
.||.|||||..|||||||.||..|..|.||||||||.||.||.|||||.|
RBAM_024260__ 951 CCGCATGGTGCTAAATGAGACTTTGCGGCTGTATCCGACTGCCCCGGCAT 1000
BSNT_03936 104 TTTCTCTATATGCGAAGGAGGATACTGTTCTAGGCGGGGAATATCCGATC 153
|||||||.||.||||||||.|||||.|||||.||||||.||||||||||
RBAM_024260__ 1001 TTTCTCTGTACGCGAAGGAAGATACGGTTCTCGGCGGGAAATATCCGAT- 1049
BSNT_03936 154 AGCAAAGGG-CAGCCAGTCACTGTTTTAATTCCAAAACTGCACCGGGACC 202
.||.||||| |||||.||.||..||.|.|.|||..|.|||||||||||..
RBAM_024260__ 1050 TGCGAAGGGACAGCCGGTGACGATTCTGACTCCTCAGCTGCACCGGGATA 1099
BSNT_03936 203 AAAACGCTTGGGGGCCGGATGCGGAAGAT-TTCCGTCCGGAACGGTTTGA 251
|||.|||.|||||....|||||.| ||.| ||||||||||||.|| ||.|
RBAM_024260__ 1100 AAAGCGCGTGGGGAGAAGATGCCG-AGTTATTCCGTCCGGAAAGG-TTCA 1147
BSNT_03936 252 G-GATCC--------TTCAAGTATCCCTCACCATGCGTATAAGCCGTTTG 292
| ||||| |||..| || .||||||||||||||||.|
RBAM_024260__ 1148 GCGATCCCGCGGCAATTCCGG-----CT---GATGCGTATAAGCCGTTCG 1189
BSNT_03936 293 GAAACGGACAGCGCGCTTGTATTGGCATGCAGTTTGCTCTTCAAGAAGCG 342
||||||||||||||||.||.||.||.|||||||||||.||.||.||||||
RBAM_024260__ 1190 GAAACGGACAGCGCGCATGCATCGGGATGCAGTTTGCCCTGCAGGAAGCG 1239
BSNT_03936 343 ACAATGGTTCTCGGTCTTGTATTAAAGCATTTTGAATTGATTAACCATAC 392
||||||||.|||||.|||||..|.||.|||||||||.|||||.|.|||||
RBAM_024260__ 1240 ACAATGGTGCTCGGCCTTGTCCTGAAACATTTTGAACTGATTGATCATAC 1289
BSNT_03936 393 TGGCTACGAACTAAAAATCAAAGAAGCATTAACGATCAAGCCGGATGATT 442
||..||.||.||.|..||.||||||||..||||.||.|||||.|.|||||
RBAM_024260__ 1290 TGATTATGAGCTTACGATTAAAGAAGCTCTAACCATTAAGCCCGGTGATT 1339
BSNT_03936 443 TTAAAATTACTGTGAAACCGCGGAAAACAGCGG-------CAATCAATGT 485
|||||||...||||| |||||| .|| |||||
RBAM_024260__ 1340 TTAAAATCCGTGTGA--------AAAACA-AGGACGTGTCCAATC----- 1375
BSNT_03936 486 ACAGAGAAAAGAACAG-----GCAGAAATC--AAAGCAGAA--------- 519
|.||| ||| |||.| |||||.|||
RBAM_024260__ 1376 -----------ATCAGCCCGTGCA-AAACCATAAAGCTGAAGGAAGCGGT 1413
BSNT_03936 520 -ACAAAGCCAAAAGAAACCAAACCTAAA--------CACGGCACACCTTT 560
|||||| |||||||.||| .||| |||||.||.||..|
RBAM_024260__ 1414 CACAAAG----AAGAAACGAAA--GAAATCCCGTCCCACGGAACGCCGCT 1457
BSNT_03936 561 ACTCGTTCTTTACGGTTCAAACCTTGGGACAGCTGAGGGAATAGCCGATG 610
.|||.||||||||||.|||||..|.||.||.||.||.|||||.||.||.|
RBAM_024260__ 1458 TCTCATTCTTTACGGATCAAATTTAGGAACTGCGGAAGGAATCGCGGAAG 1507
BSNT_03936 611 AATTGGCT--TCTC-----AAGGCCGCCAGATGGGCTTTACAGCTGAAA- 652
|..||||| |.|| ||| ||.| ||.|||.||.||||||
RBAM_024260__ 1508 AGCTGGCTGATATCGGAAGAAG-----CAAA--GGATTTTCAACTGAAAG 1550
BSNT_03936 653 CGGCTCCGCTTGATGATTATATCGGCAAGCTCCCTGAAGAAGGGGCAGTC 702
|||| |||||.|||||||||..|||.||.||.||||.|.||||.||||||
RBAM_024260__ 1551 CGGC-CCGCTCGATGATTATGCCGGGAAACTGCCTGTAAAAGGCGCAGTC 1599
BSNT_03936 703 GTCATTGTAACGGCTTCTTATAATGGGTCGCCGCCTGATAATGCTGCCGG 752
||.|||||.||||||||||||||.|||.||||.|||||||||||.||.||
RBAM_024260__ 1600 GTTATTGTTACGGCTTCTTATAACGGGGCGCCTCCTGATAATGCGGCGGG 1649
BSNT_03936 753 CTTTGTAGAGTGGCTGAAAGAGCTTGAGGA--AGGCCAATTGAAAGGTGT 800
.|||||..|.|||.||.||...|||||.|| ||| ||||.||.|||||
RBAM_024260__ 1650 TTTTGTGAAATGGATGGAAACCCTTGAAGATCAGG--AATTAAAGGGTGT 1697
BSNT_03936 801 TTCCTATGCGGTATTCGGCTGCGGGAACCGGAGCTGGGCCAGCACGTATC 850
|||.||.||.||.|||||||||||..||||.|.|||||||..|||.||.|
RBAM_024260__ 1698 TTCTTACGCCGTCTTCGGCTGCGGAGACCGCAACTGGGCCGCCACTTACC 1747
BSNT_03936 851 AGCGGATTCCCCGCCTGATTGATGACATGATGAAAGCAAAGGGGGCATCG 900
|..||||.|||||||||||.||..|..||.|..|||.|||.||||||...
RBAM_024260__ 1748 AAAGGATCCCCCGCCTGATAGACAAAGTGCTTGAAGAAAAAGGGGCAAAA 1797
BSNT_03936 901 CGTTTAACAGAGATTGGGGAAGGTGACGCCGCCGATGATTTTGA------ 944
||..|.||....||.|||||.||.|||...||||||||||||||
RBAM_024260__ 1798 CGGCTGACCTCTATCGGGGAGGGCGACAATGCCGATGATTTTGAGTACAG 1847
BSNT_03936 945 -----AAGCCATCGCGAGTCTTGGGAAAACCGCTTCTGGAAGGAAACGAT 989
||||| ||||||.||...|||||||||||.|..||
RBAM_024260__ 1848 TCAGGAAGCC-----------TGGGAAGACTCATTCTGGAAGGACATCAT 1886
BSNT_03936 990 GGACGCATTTGATATTAA--------CGAAATAGCCCAGAAAGAA--GAC 1029
|.|.||.|||.||||..| |.|||.|| |.|||.|| .||
RBAM_024260__ 1887 GAAGGCTTTTCATATAGAGGCCGCTCCAAAACAG---ACAAACAAATCAC 1933
BSNT_03936 1030 AGGCCTTCATTATCGATTGCTTTTCTCAGTGAAGCGACGGAAACGCCGGT 1079
|| |||||.||.|..|...|.||||||||..|.||.||||||.|
RBAM_024260__ 1934 AG-------TTATCAATCGAATACGTAAGTGAAGCAGCCGAGACGCCGAT 1976
BSNT_03936 1080 TGCTAAAGCATATGGCGCGTTTGAAGGGGTTGTGTTAGAGAATCGAGAAC 1129
|||.|||.|.||....||.|||||.|.||..||..|...|||...|||.|
RBAM_024260__ 1977 TGCCAAAACGTACAAAGCATTTGAGGCGGAGGTCATCACGAACAAAGAGC 2026
BSNT_03936 1130 TCCA----GACAGCTGACAGCACGCGTTCAACCTGCCATATTGAATTG-- 1173
|.|| ||.|| |||||.|||.|||..|.|.||||||||..||
RBAM_024260__ 2027 TTCATACCGAAAG----CAGCAAGCGCTCAGTCCGGCATATTGAGCTGCG 2072
BSNT_03936 1174 -------GAAATTCCGGCTGGTAAAACATATAAAGAAGGCGATCATATCG 1216
|||| |.| ||||.|||.|.|||||.||||||.|||
RBAM_024260__ 2073 TCTCCCCGAAA------CAG---AAACGTATCAGGAAGGAGATCATCTCG 2113
BSNT_03936 1217 GAATCCTGCCGAAGAACAGCAGGGAGCTTGTTCAGCGGGTTCTCA---GC 1263
|..|.||.|||.|.||||||.||||.| ||.|||||.| |.||| ||
RBAM_024260__ 2114 GGGTGCTTCCGCAAAACAGCGGGGAAC-TGATCAGCCG--TGTCATTCGC 2160
BSNT_03936 1264 CGATTCGGT-TTGCAGTCC-AATCA-----TGTGATAAAAGTAAG---CG 1303
||||||||| ||| .||| ||.|| | |||.|..||| ||
RBAM_024260__ 2161 CGATTCGGTCTTG--ATCCGAACCAGCACTT----TAAGATCAAGGGCCG 2204
BSNT_03936 1304 GAAGCGCTCATATGGCTCATCTGCCGATGGATCGGCCGATCAAAGTTGCG 1353
|.||| ||.||||||||||||||||.||||||.|.||.|...||
RBAM_024260__ 2205 GCAGC-------TGCCTCATCTGCCGATGGACCGGCCGGTTAATGCGCCG 2247
BSNT_03936 1354 GATTTATTGTCGTCCTATGTAGAGCTGCAGGAACCGGCATCAAG-GCTTC 1402
||..|.|||.||||||||||||||||||||||.||||||.|.|| || .|
RBAM_024260__ 2248 GAGCTTTTGGCGTCCTATGTAGAGCTGCAGGAGCCGGCAACGAGAGC-CC 2296
BSNT_03936 1403 AGCTTCGGGAGCTGGCCTCTTATACAGTTTGTCCGCCGCATCAAAAAGAG 1452
|||||||.||.||.|||.|..||||.||.||.||||||||.||||||||.
RBAM_024260__ 2297 AGCTTCGCGAACTTGCCGCACATACCGTGTGCCCGCCGCACCAAAAAGAA 2346
BSNT_03936 1453 CTGGAACAGCTCGTTTCAGATGAT--GGCATTTACAAAGAGCAGGTACTT 1500
.||||.||.||...|||.|||||| |||| ||.|||||..|.||.| |
RBAM_024260__ 2347 TTGGAGCATCTTTATTCTGATGATGCGGCA--TATAAAGAAAACGTGC-T 2393
BSNT_03936 1501 GCAAAA-CGTCTTACCATGCTTGATTTTTTAGAGGATTATCCTGCTTGCG 1549
|.|||| ||..|.||||||||.||..|..|.||.|||||||||||.||.|
RBAM_024260__ 2394 GAAAAACCGAATGACCATGCTGGACCTGCTGGAAGATTATCCTGCATGTG 2443
BSNT_03936 1550 AAATGCCGTTTGAACGGTTTTTAGCACTTTTGCCATCACTAAAACCGAGA 1599
||.||||||||||.||.|||||||.||||.||||.||..||||..||.|.
RBAM_024260__ 2444 AACTGCCGTTTGAGCGCTTTTTAGAACTTCTGCCGTCCTTAAAGGCGCGC 2493
BSNT_03936 1600 TACTATTCCATTTCAAGCTCACCGAAAGTTCATGCAAATATCG------T 1643
||.|||||.||.||||||||||||| |.||||..|.|| |
RBAM_024260__ 2494 TATTATTCAATCTCAAGCTCACCGA------AGGCAACCAGCGGGGAGCT 2537
BSNT_03936 1644 GAGCATGACGGTAGGAGTTGTGAAAGCCTCAGCATGGAGCGGCCGAGGTG 1693
.||.||.|||||.||.|||||||..||..|.||||||||||||||.||.|
RBAM_024260__ 2538 CAGTATCACGGTCGGCGTTGTGACGGCTCCGGCATGGAGCGGCCGTGGGG 2587
BSNT_03936 1694 AATACCGGGGTGTCGCCTCTAATTATTTAGCAGAGTTGAATAC----AGG 1739
||||||||||.||.||.||.||.||||||||.| ||.||| |||
RBAM_024260__ 2588 AATACCGGGGCGTGGCTTCGAACTATTTAGCCG----GATTACAAAAAGG 2633
BSNT_03936 1740 TGATGCAGCAGCCTGCTTCATTCGTACGCCGCAGTCCGGATTC-CAGATG 1788
.|||.|.||.|.|||.|||||.||..||||||||||.||.||| || .||
RBAM_024260__ 2634 CGATTCTGCCGTCTGTTTCATCCGCTCGCCGCAGTCGGGTTTCGCA-TTG 2682
BSNT_03936 1789 CCGGATGAGCCTGAAACGCCTATGATTATGGTCGGGCCGGGCACAGGAAT 1838
||.||..|.||..||||||||.|.|||||||||||..|.|||||||||||
RBAM_024260__ 2683 CCTGAAAATCCGAAAACGCCTCTCATTATGGTCGGAGCAGGCACAGGAAT 2732
BSNT_03936 1839 TGCGCCATTCAGGGGCTTTATTCAGGCAAGATCGGTTTTGAAGAAGGAA- 1887
||||||.||||||||.|||||.|||||..|..| ||..|||..||
RBAM_024260__ 2733 TGCGCCGTTCAGGGGATTTATCCAGGCGCGGGC-----TGCCGAAAAAAT 2777
BSNT_03936 1888 ----GGAAGCACCCTTGGTGAAGCACTTTTATACTTCGGCTGCCGCCGCC 1933
||.|.||.|||.||.|||||.|.||||||||||||||||||.|..|
RBAM_024260__ 2778 GTCTGGTAACAGCCTGGGCGAAGCTCATTTATACTTCGGCTGCCGGCATC 2827
BSNT_03936 1934 CGGACCATGACGACCTTTACAGAGAAGAGCTGGATCAAGCGGAACAGGAA 1983
|.||.||.|||||.||.||||.|||.||..|.||.||.||||| |||
RBAM_024260__ 2828 CTGAACAAGACGATCTGTACAAAGATGAATTCGACCATGCGGA----GAA 2873
BSNT_03936 1984 ----GGTTTGGTCACAATCCGCCGATGCTACTCGCGCGT----CA----- 2020
||..|.|||| ||| ||| .|||.|||| ||
RBAM_024260__ 2874 AAACGGCCTTGTCA-------CCG-TGC--ATCGGGCGTATTCCAGGTTA 2913
BSNT_03936 2021 -AAAACGAACCAAAAGAATATGTCCAGCA-------CTT------GCTCA 2056
|..|.||....||||.||||||.|||.| ||| |||
RBAM_024260__ 2914 GATCAGGACTGTAAAGTATATGTACAGGATGTTCTGCTTCGCGAGGCT-- 2961
BSNT_03936 2057 AGCAAGATACGCAGAAATTGATGACACTCATTGAAAAAGG-GGCTCATAT 2105
|||.||||| ||..|.||..||||..|||| ||| |||.|
RBAM_024260__ 2962 ----------GCACAAATT-ATTGCCCTTCTTGACCAAGGCGGC-CATCT 2999
BSNT_03936 2106 TTACGTATGCGGTGATGG-ATCACAAATGGCTCCTGATGTAGAGAA--GA 2152
.||..||||||||||.|| |.|| ||||||||||.|.|||.||.|| .|
RBAM_024260__ 3000 CTATATATGCGGTGACGGAAGCA-AAATGGCTCCGGCTGTCGAAAATGTA 3048
BSNT_03936 2153 CTTTGCGATT--GGCGTATGAAGCTGAAAAAGGAGCA--------AGTCA 2192
|| |.|| |||||||| ||||||.||| |.|||
RBAM_024260__ 3049 CT----GCTTCAGGCGTATG-------AAAAGGTGCATAACACTGATTCA 3087
BSNT_03936 2193 GGAAGAATCAGC-TGAA-TGGCTGCAAAAGCTGCAAGATCAAAGACGTTA 2240
.|||..|| | |||| |||||..||.|||||||.|...||.||.|.||
RBAM_024260__ 3088 -AAAGTTTC--CTTGAATTGGCTTGAACAGCTGCAGGCGGAAGGAAGATA 3134
BSNT_03936 2241 TGTGAAAGACGTTTGGACAGGAATGTAA 2268
||.||||||.||||||.||||.||||||
RBAM_024260__ 3135 TGCGAAAGATGTTTGGGCAGGTATGTAA 3162
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