Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03969 and RBAM_024440
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:16
# Commandline: needle
# -asequence dna-align/BSNT_03969___yrrO.1.9828.seq
# -bsequence dna-align/RBAM_024440___yrrO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03969___yrrO-RBAM_024440___yrrO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03969___yrrO-RBAM_024440___yrrO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03969___yrrO
# 2: RBAM_024440___yrrO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity: 1061/1271 (83.5%)
# Similarity: 1061/1271 (83.5%)
# Gaps: 4/1271 ( 0.3%)
# Score: 4460.0
#
#
#=======================================
BSNT_03969___ 1 ATGACTGCCGTAAATGATAAAATATCCACAATCGTTAATGGAAAGCGTGT 50
|||||.|||||||||.|.|..||.||||.|.||||.||.|||||.||.||
RBAM_024440__ 1 ATGACAGCCGTAAATCAAACCATTTCCAAAGTCGTAAACGGAAAACGCGT 50
BSNT_03969___ 51 GATTACGAAAAAGCCGGAACTTCTCGCACCTGCGGGTAATCTTGAAAAGC 100
.|||||||||||.||.|||||.||.||.||.||.||.||.||||||||..
RBAM_024440__ 51 CATTACGAAAAAACCTGAACTCCTTGCTCCGGCAGGAAACCTTGAAAAAT 100
BSNT_03969___ 101 TGAAAATCGCTGTTCATTACGGAGCGGACGCGGTCTTTATCGGGGGACAG 150
|.|||||.||.|||||||||||||||||||||||.||||||||.||||||
RBAM_024440__ 101 TAAAAATTGCCGTTCATTACGGAGCGGACGCGGTTTTTATCGGAGGACAG 150
BSNT_03969___ 151 GAATACGGGCTTCGCTCGAATGCCGATAACTTTACGATCGAAGAAATTGC 200
||||||||.||.|||||.|||||.||||||||..|.||.||||||||.||
RBAM_024440__ 151 GAATACGGACTCCGCTCAAATGCGGATAACTTCTCAATAGAAGAAATCGC 200
BSNT_03969___ 201 AGAAGGCGTTGAATTCGCAAAGAAATATGGCGCGAAGATCTACGTAACAA 250
|||.|||||.|||||.||.||.|||||.||.||.||.||.||.||.||||
RBAM_024440__ 201 AGAGGGCGTAGAATTTGCCAAAAAATACGGGGCAAAAATATATGTGACAA 250
BSNT_03969___ 251 CGAATATTTTCGCTCATAATGAAAACATGGACGGGCTTGAAGACTATTTA 300
|.||.||||||||.|||||||||||.||||||||.||.|||||.||.|||
RBAM_024440__ 251 CAAACATTTTCGCCCATAATGAAAATATGGACGGTCTGGAAGAATACTTA 300
BSNT_03969___ 301 AAAGCGCTTGGAGACGCCAACGTTGCCGGTATTATTGTGGCAGATCCGCT 350
||||||.|.||||||||.||.||||||||.|||||.||.||.||||||||
RBAM_024440__ 301 AAAGCGTTGGGAGACGCAAAAGTTGCCGGAATTATCGTCGCTGATCCGCT 350
BSNT_03969___ 351 TATTATTGAAACATGCCGCAGAGTGGCGCCGAATGTTGAGGTTCACTTGA 400
.|||||||||||||||||.||||||||.|||.|.||.||..|||||.|.|
RBAM_024440__ 351 GATTATTGAAACATGCCGGAGAGTGGCCCCGGACGTAGAAATTCACCTCA 400
BSNT_03969___ 401 GCACACAGCAGTCTCTTTCAAACTGGAAGGCTGTCCAGTTCTGGAAGGAA 450
|||||||||||||.|||||.||||||||.||.||.|||||||||||.|||
RBAM_024440__ 401 GCACACAGCAGTCCCTTTCCAACTGGAAAGCGGTGCAGTTCTGGAAAGAA 450
BSNT_03969___ 451 GAAGGTCTCGACCGCGTCGTGCTGGCACGTGAAACTAGCGCTCTTGAAAT 500
|||||.||.||||||||.|||||.||.||||||||.||||..||.|||||
RBAM_024440__ 451 GAAGGGCTTGACCGCGTAGTGCTTGCCCGTGAAACGAGCGGACTGGAAAT 500
BSNT_03969___ 501 CAGAGAAATGAAAGAAAAGGTAGATATCGAAATCGAATCCTTCATTCATG 550
.|.|||||||||.||||||||.|||||.|||||.|||.||||.||.||.|
RBAM_024440__ 501 TAAAGAAATGAAGGAAAAGGTGGATATTGAAATTGAAACCTTTATCCACG 550
BSNT_03969___ 551 GCGCAATGTGTATCGCATATTCCGGCCGCTGCGTGCTGAGCAATCACATG 600
||||.|||||||||||.|||||.|||||.|||||||||||||||||||||
RBAM_024440__ 551 GCGCCATGTGTATCGCTTATTCAGGCCGATGCGTGCTGAGCAATCACATG 600
BSNT_03969___ 601 ACAGCGCGGGATTCCAACCGCGGAGGCTGCTGCCAGTCATGCCGCTGGGA 650
||.||.|||||||||||||||||.||||||||.|||||.|||||||||||
RBAM_024440__ 601 ACGGCCCGGGATTCCAACCGCGGCGGCTGCTGTCAGTCCTGCCGCTGGGA 650
BSNT_03969___ 651 TTATGATCTCTATCAAACAGACGGTGCCAACGCCGTTGCTTTGTATGGTG 700
||||||.||.|||||.|||||||||||.|||||.||.||..|.||.|..|
RBAM_024440__ 651 TTATGACCTGTATCAGACAGACGGTGCAAACGCGGTCGCGCTCTACGACG 700
BSNT_03969___ 701 AAGAAGATGCACCATTTGCGATGAGCCCGAAAGATTTGAAGCTGATTGAA 750
|||||||.||.||.|||||||||||||||||||||||.||..||||||||
RBAM_024440__ 701 AAGAAGACGCTCCGTTTGCGATGAGCCCGAAAGATTTAAAATTGATTGAA 750
BSNT_03969___ 751 TCCATTCCGAAAATGATCGAAATGGGAATAGACAGCTTAAAGATTGAAGG 800
|||||.|||.||||||||||.|||||.||.||||||.|.||.||||||||
RBAM_024440__ 751 TCCATCCCGCAAATGATCGAGATGGGCATCGACAGCCTGAAAATTGAAGG 800
BSNT_03969___ 801 CCGCATGAAATCCATTCACTATGTAGCAACTGTTGTCAGCGTATACCGCA 850
|||.||||||||.|||||.||.||.||.||.|||||||||||.||.||||
RBAM_024440__ 801 CCGGATGAAATCGATTCATTACGTTGCGACGGTTGTCAGCGTGTATCGCA 850
BSNT_03969___ 851 AAGTAATCGATGCTTATTGCGCTGATCCAGAGAACTTTGTGATTCAAAAA 900
||||.|||||.||.||.|||||||||||.||.||||||||.|||||||||
RBAM_024440__ 851 AAGTCATCGACGCATACTGCGCTGATCCTGAAAACTTTGTCATTCAAAAA 900
BSNT_03969___ 901 GAATGGCTTGAAGAGCTCGATAAGTGCGCCAACCGGGACACTGCGACAGC 950
||||||||.||.|||||.||.||.||.||.||||||||.||.|||.|.||
RBAM_024440__ 901 GAATGGCTGGATGAGCTGGACAAATGTGCAAACCGGGATACCGCGCCTGC 950
BSNT_03969___ 951 TTTCTTTGAAGGAACGCCAGGCTATGAAGAGCAAATGTTCGGCGAACACG 1000
||||||||||||.|||||.||.|||||||||||.||||||||.|||||||
RBAM_024440__ 951 TTTCTTTGAAGGCACGCCCGGGTATGAAGAGCAGATGTTCGGTGAACACG 1000
BSNT_03969___ 1001 CCAAGAAAACGACATATGATTTTGTCGGCTTAGTGCTGAATTATGATGAA 1050
..||||||||.||||.||||||||.|||..|.|||||....|||.|.||.
RBAM_024440__ 1001 GAAAGAAAACAACATTTGATTTTGCCGGTCTCGTGCTCGCGTATAACGAG 1050
BSNT_03969___ 1051 GATACACAAATGGTCACGCTTCAGCAACGCAATTTCTTCAAAAAAGGCGA 1100
||.||.||||||||.|||||.|||||.|||||||||||.|||.||||.||
RBAM_024440__ 1051 GAAACTCAAATGGTGACGCTCCAGCAGCGCAATTTCTTTAAACAAGGTGA 1100
BSNT_03969___ 1101 CGAAGTGGAATTTTTCGGTCCAGAAATCGAAAACTTTACACAT--ACGAT 1148
|||||||||||||||||||||.||||||||.|| ||.||||| ||.||
RBAM_024440__ 1101 CGAAGTGGAATTTTTCGGTCCTGAAATCGACAA--TTTCACATTCACAAT 1148
BSNT_03969___ 1149 TGAAACCATTTGGGACGAAGACGGAAATGAGCTAGATGCTGCCCGCCATC 1198
.|..||.||||||||||||||||||||.|||||.||||||||||||||||
RBAM_024440__ 1149 CGGCACTATTTGGGACGAAGACGGAAACGAGCTTGATGCTGCCCGCCATC 1198
BSNT_03969___ 1199 CCCTGCAAATTGTCAAATTCAAACTAGACAAAAAGATTTATCCGAGCAAC 1248
||||||||||.||.|.|||.|||.||||||||||||||||||||||||||
RBAM_024440__ 1199 CCCTGCAAATCGTTACATTTAAAGTAGACAAAAAGATTTATCCGAGCAAC 1248
BSNT_03969___ 1249 ATGATGAGAAAGGGGAAGTAA 1269
|||||||||||||||||||||
RBAM_024440__ 1249 ATGATGAGAAAGGGGAAGTAA 1269
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