Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03977 and RBAM_024510
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:17
# Commandline: needle
# -asequence dna-align/BSNT_03977___alaS.1.9828.seq
# -bsequence dna-align/RBAM_024510___alaS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03977___alaS-RBAM_024510___alaS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03977___alaS-RBAM_024510___alaS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03977___alaS
# 2: RBAM_024510___alaS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2656
# Identity: 2143/2656 (80.7%)
# Similarity: 2143/2656 (80.7%)
# Gaps: 38/2656 ( 1.4%)
# Score: 8625.0
#
#
#=======================================
BSNT_03977___ 1 ATGAAACACTTAACTTCTGCGGAAGTGCGTCAAATGTTTTTGGATTTCTT 50
||||||||||||||||||||.||||||||||||||||||||.||||||||
RBAM_024510__ 1 ATGAAACACTTAACTTCTGCTGAAGTGCGTCAAATGTTTTTAGATTTCTT 50
BSNT_03977___ 51 TAAAGAAAAAGGACATGCGGTAGAGCCAAGCGCGTCATTAGTGCCTCATG 100
||||||||||||.|||||.||.||.||.|||||.|||||.||.||.||||
RBAM_024510__ 51 TAAAGAAAAAGGCCATGCCGTTGAACCGAGCGCCTCATTGGTTCCGCATG 100
BSNT_03977___ 101 AGGATCCTTCACTGCTTTGGATCAACAGCGGTGTTGCGACGCTGAAAAAA 150
|.|||||.||..|..|.||||||||||||||.||||||||||||||||||
RBAM_024510__ 101 AAGATCCGTCTTTATTATGGATCAACAGCGGCGTTGCGACGCTGAAAAAA 150
BSNT_03977___ 151 TATTTTGACGGCCGTGTCGTGCCGGAAAATCCAAGAATCGTAAACGCTCA 200
||.|||||||||||.||.||||||||.|||||.|||||.||||||||.||
RBAM_024510__ 151 TACTTTGACGGCCGCGTTGTGCCGGAGAATCCGAGAATTGTAAACGCGCA 200
BSNT_03977___ 201 AAAAGCGATCAGAACAAACGATATAGAAAATGTAGGTAAAACTGCGCGGC 250
||||.|.|||.|||||||.|||||.||||||||.||.|||||.|||||.|
RBAM_024510__ 201 AAAATCAATCCGAACAAATGATATTGAAAATGTGGGGAAAACGGCGCGCC 250
BSNT_03977___ 251 ATCACACTTTCTTTGAAATGCTCGGAAACTTTTCCATCGGCGATTATTTC 300
|.|||||.||||||||.|||||||||||||||||||||||.||||||||.
RBAM_024510__ 251 ACCACACGTTCTTTGAGATGCTCGGAAACTTTTCCATCGGTGATTATTTT 300
BSNT_03977___ 301 AAAGAAGAAGCCATTACATGGGCTTGGGAGTTTTTAACGAGCGACAAGTG 350
|||||||||||.||.||.|||||.||||||||||||||||||||.|||||
RBAM_024510__ 301 AAAGAAGAAGCGATCACGTGGGCATGGGAGTTTTTAACGAGCGAAAAGTG 350
BSNT_03977___ 351 GATTGGCTTCGACAAAGAGCTTCTCTCTGTTACGGTTCATCCTGAAGATG 400
|||.|||||.||....|||||.||.|||||.||||||||.|||||.||||
RBAM_024510__ 351 GATCGGCTTTGATCCGGAGCTGCTGTCTGTAACGGTTCACCCTGAGGATG 400
BSNT_03977___ 401 AAGAGGCATATGAGTTTTGGGCGAAAAAAATCGGTATTCCTGAAGAAAGA 450
||||.||.|||..|.|.||||||.||||||||||..||||.|||||||||
RBAM_024510__ 401 AAGAAGCTTATACGCTATGGGCGGAAAAAATCGGCGTTCCGGAAGAAAGA 450
BSNT_03977___ 451 ATTATCCGTCTGGAAGGGAACTTCTGGGATATCGGTGAAGGGCCGAGCGG 500
||.||||||||||||||||||||||||||||||||.|||||.||||||||
RBAM_024510__ 451 ATCATCCGTCTGGAAGGGAACTTCTGGGATATCGGCGAAGGCCCGAGCGG 500
BSNT_03977___ 501 ACCGAATACGGAAATCTTTTACGACCGCGGTGAAGCATACGGTAATGATC 550
|||||||||||||||.||.||.||||||||.||...||||||.|||||.|
RBAM_024510__ 501 ACCGAATACGGAAATTTTCTATGACCGCGGCGAGAAATACGGCAATGACC 550
BSNT_03977___ 551 CAGAAGATCCGGAGCTTTACCCAGGCGGAGAAAACGACCGTTACCTGGAA 600
|...||||.|.||..|.||.||.|||||.|||||.||.||.||.||.|||
RBAM_024510__ 551 CGTCAGATTCTGAATTGTATCCGGGCGGCGAAAATGATCGCTATCTTGAA 600
BSNT_03977___ 601 GTATGGAACCTTGTGTTCTCAGAGTTCAACCATAACCCTGACGGCACGTA 650
|||||||||||.||.|||||||||||||||||.|||||.|||||||||||
RBAM_024510__ 601 GTATGGAACCTGGTATTCTCAGAGTTCAACCACAACCCGGACGGCACGTA 650
BSNT_03977___ 651 CACACCGCTTCCGAAGAAAAACATTGATACAGGCATGGGTCTTGAAAGAA 700
||||||||||||||||||||||||||||||.||.|||||.||||||.|.|
RBAM_024510__ 651 CACACCGCTTCCGAAGAAAAACATTGATACGGGTATGGGGCTTGAACGGA 700
BSNT_03977___ 701 TGGTATCTGTCATCCAGAATGTTCCGACAAACTTTGACACCGATTTGTTT 750
||||.||.||.||.|||.||||..||||||||||||||||.|||||||||
RBAM_024510__ 701 TGGTCTCCGTGATTCAGGATGTCTCGACAAACTTTGACACTGATTTGTTT 750
BSNT_03977___ 751 GTTCCGATCATTAAAGCAACAGAATCG-ATTTCTGGTGAAACATATGGCA 799
.|.|||||.|||.||||||||| |.|| |||||.||.||..|.||.||.|
RBAM_024510__ 751 ATGCCGATTATTGAAGCAACAG-AGCGCATTTCCGGAGATGCTTACGGAA 799
BSNT_03977___ 800 AAGA--CAATGTGAAAGACACTGCGTTTAAAGTGATTGCTGACCATATCA 847
|.|| || |||||.||.||.||.|||||||||||.||.||.|||||||
RBAM_024510__ 800 AGGATGCA--GTGAAGGATACGGCCTTTAAAGTGATCGCCGATCATATCA 847
BSNT_03977___ 848 GAACGGTTGCCTTTGCTGTCAGTGACGGTGCGCTGCCGTCAAATGAAGGC 897
|||||||.||.|||||.||.||.|||||.||||||||.||.||.|||||.
RBAM_024510__ 848 GAACGGTCGCATTTGCGGTAAGCGACGGGGCGCTGCCTTCGAACGAAGGG 897
BSNT_03977___ 898 CGCGGCTATGTATTAAGACGCTTATTACGCCGTGCCGTGCGTTATGCCAA 947
|||||.||||||.|.||||||.|.||.|||||.||.|||||.||.||.||
RBAM_024510__ 898 CGCGGGTATGTACTGAGACGCCTCTTGCGCCGGGCAGTGCGATACGCGAA 947
BSNT_03977___ 948 AACGATCAACATCCATCGTCCGTTCATGTTTGATTTAGTGCCGGTTGTCG 997
|||..||...|||...||||||||.||||..||..||||.|||..|||.|
RBAM_024510__ 948 AACCCTCGGTATCAGCCGTCCGTTTATGTACGAGCTAGTACCGACTGTTG 997
BSNT_03977___ 998 CAGAAATCATGGCTGATTTCTATCCTGAAGTGAAAGAGAAAGC-GGATTT 1046
|||.|||.||||..|.|||||||||.||.|||||||| ||||| .||.||
RBAM_024510__ 998 CAGGAATTATGGACGCTTTCTATCCGGAGGTGAAAGA-AAAGCAAGAGTT 1046
BSNT_03977___ 1047 CATCGCAAAAGTCATTAAAACCGAGGAAGAACGCTTCCATGAGACCCTTA 1096
.|||||.||||||||.|||||.||||||||.||||||||.||.||..|.|
RBAM_024510__ 1047 TATCGCCAAAGTCATCAAAACGGAGGAAGAGCGCTTCCACGAAACATTAA 1096
BSNT_03977___ 1097 ATGAAGGGCTTGCGATCCTGTCAGAAATGATCAAAAAAGAAAAAGACAAG 1146
|.|||||.||.||.||..|.||.||..||||.||.|||||.||.||.||.
RBAM_024510__ 1097 ACGAAGGTCTGGCCATTTTATCCGACGTGATAAAGAAAGAGAAGGAAAAA 1146
BSNT_03977___ 1147 GGCAGCAGCGTTATCTCAGGTGCTGATGTGTTTAAACTGTATGATACGTA 1196
||||||.||.|.|||||.||....||.||.||.||||||||.||||||||
RBAM_024510__ 1147 GGCAGCGGCATCATCTCCGGAAAAGACGTATTCAAACTGTACGATACGTA 1196
BSNT_03977___ 1197 TGGATTCCCGGTTGAATTGACTGAAGAATACGCAGAAGACGAGAACATGA 1246
.||||||||||||||||||||.||.||||||||.|||||.|||.|.||||
RBAM_024510__ 1197 CGGATTCCCGGTTGAATTGACGGAGGAATACGCGGAAGATGAGCAAATGA 1246
BSNT_03977___ 1247 CGGTTGACCATGAGGGCTTTGAGGAGGAAATGAACCAGCAGCGTGAACGG 1296
|||||||||||.|.||||||||.|..||||||.|..|.||||||||||||
RBAM_024510__ 1247 CGGTTGACCATAAAGGCTTTGAAGCCGAAATGGAAAAACAGCGTGAACGG 1296
BSNT_03977___ 1297 GCAAGAAACGCCCGCCAGGATGTCGGCAGCATGCAGGTGCAGGGCGGCGC 1346
||.|||||.||.|||||.|||||.||.|||||||||||.|||||||||||
RBAM_024510__ 1297 GCGAGAAATGCGCGCCAAGATGTAGGAAGCATGCAGGTTCAGGGCGGCGC 1346
BSNT_03977___ 1347 ACTGCGCGACGTGACCGATGAAAGCACATTTGTCGGCTACTCTCAAACC- 1395
|.|||||||..|.||||..|||||||||||||||||||||..| .||
RBAM_024510__ 1347 ATTGCGCGATATTACCGCAGAAAGCACATTTGTCGGCTACAGT---GCCG 1393
BSNT_03977___ 1396 --AAAGCTGATGCCAATATCATTGTGCTTCTTCAGGACGGCCAATTAATC 1443
||||||||.||.||..|.||.|.|||||||||.|||||.|||||||||
RBAM_024510__ 1394 TAAAAGCTGAAGCGAAGGTGATCGAGCTTCTTCATGACGGGCAATTAATC 1443
BSNT_03977___ 1444 GAAGAGGCTTATGAAGGAGAAAGCGTTCAAATCATTCTTGATGAAACACC 1493
...|||||..|||||||.||.|.|||.||||||.|||||||..||||.||
RBAM_024510__ 1444 AGTGAGGCGCATGAAGGGGATACCGTCCAAATCCTTCTTGACAAAACGCC 1493
BSNT_03977___ 1494 GTTCTATGCAGAAAGCGGCGGCCAAATCGGGGATAAAGGCTATCTCCGAA 1543
.||||||||.|||||||||||.||.|||||.||.|.|||....||..|||
RBAM_024510__ 1494 TTTCTATGCTGAAAGCGGCGGACAGATCGGTGACAGAGGAGTGCTGAGAA 1543
BSNT_03977___ 1544 GCGAGCAGGCAGTTGTAAGAATTAAAGATGTTCAAAAAGCGCCAAACGGC 1593
||||||||||.||.||||..||||||||.||..|||||||.||.|||||.
RBAM_024510__ 1544 GCGAGCAGGCTGTCGTAACCATTAAAGACGTGAAAAAAGCTCCGAACGGT 1593
BSNT_03977___ 1594 CAGCATGTGCATGAAGGTGTTGTGGAGAGCGGTACTGTTCAAAAAGGCCT 1643
||||||||.||.|||||....|||||.|||||.||..|||||||||| |
RBAM_024510__ 1594 CAGCATGTACACGAAGGCACGGTGGATAGCGGCACGATTCAAAAAGG--T 1641
BSNT_03977___ 1644 GCA--TGTTACGGCTGAAGTTGAAGACCATATGAGAAGCGGCGTCATTAA 1691
||| .||.|||||||||||||||||.||.||||||||||||||..|.||
RBAM_024510__ 1642 GCAAGCGTGACGGCTGAAGTTGAAGATCAAATGAGAAGCGGCGTGGTGAA 1691
BSNT_03977___ 1692 AAACCACACGGCAACGCATTTATTGCATCAGGCTCTAAAAGACGTTCTTG 1741
||||||.|||||.||.||..|..||||.|||||.||.|||||||||||.|
RBAM_024510__ 1692 AAACCATACGGCTACCCACCTTCTGCACCAGGCGCTGAAAGACGTTCTCG 1741
BSNT_03977___ 1742 GAACTCATGTCAATCAGGCTGGCTCTCTTGTAACGGAAAACCGTCTTCGT 1791
|.||.||||||||.||.||.||.||.||.||.||.|||||||||||.|||
RBAM_024510__ 1742 GCACACATGTCAACCAAGCGGGTTCACTCGTTACCGAAAACCGTCTGCGT 1791
BSNT_03977___ 1792 TTTGACTTCTCGCACTTTGGCCAAGTGACAAAAGAAGAGCTCGAACAAAT 1841
|||||||||||.||.||.||.||||||||.||||||||.||.||||..||
RBAM_024510__ 1792 TTTGACTTCTCTCATTTCGGTCAAGTGACGAAAGAAGAACTTGAACGCAT 1841
BSNT_03977___ 1842 TGAAAGAATCGTAAACGAAAAGATCTGGGCGAGCATTCCGGTCAGC-ATT 1890
||||.|||||||.||||||||.|||||||.|||||||||||| ||| |||
RBAM_024510__ 1842 TGAAGGAATCGTCAACGAAAAAATCTGGGAGAGCATTCCGGT-AGCGATT 1890
BSNT_03977___ 1891 GATTTGAAACCGATCGCTGAAGCAAAAGAAATGGGTGCGATGGCACTGTT 1940
|||||||||||||||..||||||.|||||||||||.||||||||.|||||
RBAM_024510__ 1891 GATTTGAAACCGATCAATGAAGCGAAAGAAATGGGCGCGATGGCCCTGTT 1940
BSNT_03977___ 1941 CGGCGAAAAATATGGCGATATTGTCCGTGTCGTTCAAGTTGGAGATTACA 1990
||||||.|||||.||||||||.|||||.|||||.|||||.||||||||||
RBAM_024510__ 1941 CGGCGAGAAATACGGCGATATCGTCCGCGTCGTACAAGTCGGAGATTACA 1990
BSNT_03977___ 1991 GCTTAGAGCTGTGCGGCGGCTGCCATGTCAGAAATACAGCAGAAATCGGC 2040
||.|.|||||.||||||||.||||||||||..|||||.||.|||||||||
RBAM_024510__ 1991 GCCTTGAGCTTTGCGGCGGATGCCATGTCACGAATACGGCTGAAATCGGC 2040
BSNT_03977___ 2041 TTGTTTAAAATCGTTTCTGAATCCGGAATCGGAGCAGGCACAAGACGGAT 2090
.|||||||||||||.||.|||||.||.|||||.|||||.|||.||.|.||
RBAM_024510__ 2041 CTGTTTAAAATCGTATCCGAATCAGGGATCGGCGCAGGGACACGAAGAAT 2090
BSNT_03977___ 2091 TGAAGCTGTAACGGGACAAGGCGCTTACGTC--GAAATGAACAGCCAGAT 2138
||||||.|||||.|||.|||||||||| || |||||||||||||||.|
RBAM_024510__ 2091 TGAAGCCGTAACAGGAAAAGGCGCTTA--TCAGGAAATGAACAGCCAGCT 2138
BSNT_03977___ 2139 -----TTCTGTATTGAAGCAGACCGCTGACGAGCTGAAAACAAATATCAA 2183
||| ||.||||..|.||.||||||||||||.||||..|.||
RBAM_024510__ 2139 CAGCCTTC-----TGCAGCATGCTGCGGACGAGCTGAAATCAAACGTAAA 2183
BSNT_03977___ 2184 AGAAGTGCCGAAACGGGTTGCGGCTCTGCAGGCTGAACTGAAGGAAGCAC 2233
|||.||.|||||.||..||..|.||||.||.||.||.|||||||||||.|
RBAM_024510__ 2184 AGACGTACCGAAGCGAATTCAGTCTCTTCAAGCGGAGCTGAAGGAAGCGC 2233
BSNT_03977___ 2234 AAAGAGAAAATGAATCTCTTCTTGCA--AAACTAGGCAACGTGGAAGCAG 2281
||||||||||||||||..|.|| || |||||.|||||.||||||||.|
RBAM_024510__ 2234 AAAGAGAAAATGAATCATTGCT--CAGCAAACTCGGCAATGTGGAAGCCG 2281
BSNT_03977___ 2282 GAGCAATCCTGTCGAAAGTAAAAGAAGTTGACGGCGTAAACGTGCTTGCG 2331
||||.||.|||||.|||||||||||..|.|.|||||||||.|||||.||.
RBAM_024510__ 2282 GAGCCATTCTGTCTAAAGTAAAAGACATCGGCGGCGTAAAAGTGCTGGCT 2331
BSNT_03977___ 2332 GCAAAAGTAAATGCAAAAGACATGAATCATCTCCGCACTATGGTCGATGA 2381
|.||||||||||||.|||||||||||.||.||.|||||||||||.|||||
RBAM_024510__ 2332 GAAAAAGTAAATGCGAAAGACATGAACCACCTTCGCACTATGGTGGATGA 2381
BSNT_03977___ 2382 ACTCAAAGCAAAGCTTGGCTCTGCGGTGATCGTGCTTGGTGCGGTACAAA 2431
.||.|||||.|||||.||.||||||||.|||.|.||.||.||.||.||||
RBAM_024510__ 2382 TCTGAAAGCGAAGCTCGGTTCTGCGGTCATCATTCTCGGCGCCGTGCAAA 2431
BSNT_03977___ 2432 ACGATAAAGTTAATATCTCTGCCGGAGTCACAAAGGACCTCATTGAGAAA 2481
|.||.|||||.||..|.||.||.||.||.||.||.|||||.||.||.|||
RBAM_024510__ 2432 ATGAGAAAGTCAACCTTTCAGCAGGCGTGACGAAAGACCTGATCGAAAAA 2481
BSNT_03977___ 2482 GGCCTTCACGCCGGCAAGCTGGTTAAACAAGCTGCGGAAGTTTGCGGCGG 2531
||||||||.||||||||..||||.||||||||.||.|||||.|||||.||
RBAM_024510__ 2482 GGCCTTCATGCCGGCAAAATGGTCAAACAAGCGGCTGAAGTCTGCGGAGG 2531
BSNT_03977___ 2532 AGGCGGCGGAGGCCGTCCGGACATGGCGCAGGCAGGCGGTAAACAGCCGG 2581
.||.|||||||||||||||||||||||||||||.|||||.||.||.||.|
RBAM_024510__ 2532 CGGAGGCGGAGGCCGTCCGGACATGGCGCAGGCCGGCGGAAAGCACCCTG 2581
BSNT_03977___ 2582 AAAAATTAGAAGAAGCTTTGGCTTCTGTAGAAGATTGGGTGAAATCCGTT 2631
|||||||.|||||.||..|.||.||||..|.|||||||.|.|||||||||
RBAM_024510__ 2582 AAAAATTGGAAGAGGCGCTCGCATCTGCGGTAGATTGGATAAAATCCGTT 2631
BSNT_03977___ 2632 TTATAA 2637
||||||
RBAM_024510__ 2632 TTATAA 2637
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