Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03988 and RBAM_024580

See Amino acid alignment / Visit BSNT_03988 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:18
# Commandline: needle
#    -asequence dna-align/BSNT_03988.1.9828.seq
#    -bsequence dna-align/RBAM_024580___yrrD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03988-RBAM_024580___yrrD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03988-RBAM_024580___yrrD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03988
# 2: RBAM_024580___yrrD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 569
# Identity:     330/569 (58.0%)
# Similarity:   330/569 (58.0%)
# Gaps:         154/569 (27.1%)
# Score: 1044.5
# 
#
#=======================================

BSNT_03988         0 --------------------------------------------------      0
                                                                       
RBAM_024580__      1 ATGCTGCCCGGCTTCTTGGCAAAACCTATACGTGTTCAACAAAAGGTGGT     50

BSNT_03988         1 ----------TTGAGAACATGCCATGAAGTAGAAGGATTCCCAGTATACT     40
                               ||||||||||||||||.||..||||||....||||||| |
RBAM_024580__     51 TGATCACACTTTGAGAACATGCCATGCAGCTGAAGGACGAACAGTATA-T     99

BSNT_03988        41 CA-GAACGAACTTCTTGTTA----------TCTCGGGGCAATTTCCGATA     79
                     .| |||  |||        |          |||||||...||.||.|||.
RBAM_024580__    100 GACGAA--AAC--------ACCGGGCGCAGTCTCGGGATGATATCGGATG    139

BSNT_03988        80 TTTGTTTTTCTC-TGAAAGGAGATTGTCTTGGGTTTATTCTTGCACAAAA    128
                     |.|||||.|||| |||..|..|.|| |||.||.||..|.||.|..||.||
RBAM_024580__    140 TATGTTTCTCTCTTGACGGCCGGTT-TCTCGGTTTCGTGCTGGAGCAGAA    188

BSNT_03988       129 ACGCTTTTTGCATCATCATCATACGC-------TATTACGGGCGTGTGAT    171
                     ||||.|.||.||       ||..|||       |.|||..|||..|||||
RBAM_024580__    189 ACGCCTGTTTCA-------CAACCGCCATCTTTTTTTAGAGGCAAGTGAT    231

BSNT_03988       172 AT-----------CTCTTCCATTCTTGATGA--CCGCATATTGGCT-TCG    207
                     ||           .||           |.||  |||     |.||| .||
RBAM_024580__    232 ATAAAAGAGATGGATC-----------AAGAAGCCG-----TAGCTGCCG    265

BSNT_03988       208 GTCA-GTTCAGAACAGCTTTT---GCCTCTTCCGAA-ATCATGCTTCACA    252
                     |||| |.|||        |||   ||||.|.||||| |.| ||.|||||.
RBAM_024580__    266 GTCATGCTCA--------TTTGCAGCCTTTGCCGAAGAGC-TGTTTCACC    306

BSNT_03988       253 TACGAGCAGATGAAGATGAAGCTTGTGAAATCGCAAGAGGGCGATATATT    302
                     |..||.|||||.||||||.|||..||||||||||..||.||.||.||.||
RBAM_024580__    307 TTTGAACAGATTAAGATGCAGCCGGTGAAATCGCCTGATGGTGAAATGTT    356

BSNT_03988       303 GGGGATGCTGGAAGATGTATACTTTTGTTTGGACAGGGGCATAATCGTAG    352
                     .||..|||||||||||||||||||||||||||||||||||||||||||||
RBAM_024580__    357 CGGTTTGCTGGAAGATGTATACTTTTGTTTGGACAGGGGCATAATCGTAG    406

BSNT_03988       353 CATATGAACTCTCGGACGGTTTCTTTTCTGACCTGGCGGGAAG----CAA    398
                     |||||||||||||||||||.||||||||.||.|||||.||.||    |||
RBAM_024580__    407 CATATGAACTCTCGGACGGCTTCTTTTCAGATCTGGCTGGCAGACGCCAA    456

BSNT_03988       399 --GCGCCAGATCCAAAGAGCGGATTCGCTTGTCGAGGTGCGGAAAGACGA    446
                       ||||| |..||     ||.|||.|||||.|.||.|.|.|||||||.|.
RBAM_024580__    457 GTGCGCC-GCGCC-----GCCGATACGCTTATTGAAGCGGGGAAAGAAGG    500

BSNT_03988       447 GATCGTTCTGAACGGATAG    465
                     .|||||.|||||||||||.
RBAM_024580__    501 CATCGTCCTGAACGGATAA    519


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