Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03991 and RBAM_024600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_03991___yrrB.1.9828.seq
# -bsequence dna-align/RBAM_024600___yrrB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03991___yrrB-RBAM_024600___yrrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03991___yrrB-RBAM_024600___yrrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03991___yrrB
# 2: RBAM_024600___yrrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity: 507/659 (76.9%)
# Similarity: 507/659 (76.9%)
# Gaps: 16/659 ( 2.4%)
# Score: 1878.5
#
#
#=======================================
BSNT_03991___ 1 GTGGATTATAATCAACTCGGTATAGAGGCGATGCAGGAAGGCGATTACGA 50
.|||||||||||.||.||||.||.||.||.||||||||.|||||||..||
RBAM_024600__ 1 ATGGATTATAATAAAATCGGGATTGACGCCATGCAGGAGGGCGATTTTGA 50
BSNT_03991___ 51 GAAAGCGGCAGAGGCATTTACAAAAGCGATTGAAGAAAATAAAGAAGACG 100
.||||||||||||||.|||||.|||||||||||.|||||.....||||..
RBAM_024600__ 51 AAAAGCGGCAGAGGCTTTTACGAAAGCGATTGAGGAAAACGGGCAAGATC 100
BSNT_03991___ 101 CGATTCCGTATATCAATTTTGCCAACCTGCTTTCATCCGTAAACGAGCTG 150
||.|.|||||||||||.||.||.||.||||||||.||.||.|||||.||.
RBAM_024600__ 101 CGGTGCCGTATATCAACTTCGCAAATCTGCTTTCTTCTGTGAACGAACTC 150
BSNT_03991___ 151 GAACGTGCGCTTGCGTTTTATGATAAAGCGCTTGAATTAGACAGT--AGC 198
|||||.||||||||.||.|||.|.|.||||||||||||.||||.| .||
RBAM_024600__ 151 GAACGGGCGCTTGCATTCTATAACAGAGCGCTTGAATTGGACAATTCGGC 200
BSNT_03991___ 199 -GCAGCCACTGCTTATTATGGAGCAGGAAATGTCTATGTTGTAAAAGAAA 247
|||||| ||||||||.||.||.|||||.||.|||||..|.||||||.
RBAM_024600__ 201 GGCAGCC---GCTTATTACGGTGCGGGAAACGTATATGTGATGAAAGAAT 247
BSNT_03991___ 248 TGTACAAAGAAGCGAAAGACATGTTTGAAAAAGCGCTTCGTGCGGGGATG 297
.||.....||||||||.||.||||||||||||||||||||..|.||.|||
RBAM_024600__ 248 CGTTTTCCGAAGCGAAGGATATGTTTGAAAAAGCGCTTCGCTCCGGAATG 297
BSNT_03991___ 298 GAAAACGGCGACCTATTTTACATGCTCGGAACGGTACTTGTCAAGCTCGA 347
||||||||.||..|.|||||.|||||.||.||.||.||.||.||..|.||
RBAM_024600__ 298 GAAAACGGAGATTTGTTTTATATGCTGGGGACCGTTCTCGTTAAATTAGA 347
BSNT_03991___ 348 ACAGCCTAAGCTTGCACTGCCATATTTACAAAGAGCGGTCGAACTGAATG 397
.|.|||.||||||||||||||||||||.||..|.||.||.|||.|.||.|
RBAM_024600__ 348 GCGGCCGAAGCTTGCACTGCCATATTTGCAGCGTGCCGTTGAATTAAACG 397
BSNT_03991___ 398 AAAACGATACGGAAGCGCGTTTTCAATTCGGGATGTGCTTAGCCAACGAG 447
||||.||.||||||||.||.||.||.|||||.||||||.|.||.||.||.
RBAM_024600__ 398 AAAATGACACGGAAGCACGCTTCCAGTTCGGAATGTGCCTCGCAAATGAA 447
BSNT_03991___ 448 GGCATGCTGGACGAAGCGCTCAGC-CAATTCGCAG-CTGTGACAGAGCAA 495
|..||||||||.|||||.|| .|| ||.||.| || |.||||..|||||.
RBAM_024600__ 448 GAAATGCTGGATGAAGCTCT-GGCGCAGTTTG-AGACGGTGATCGAGCAG 495
BSNT_03991___ 496 GACCCGGGGCATGCAGATGCATTTTATAATGCCGGTGTCGCTTATGCTTA 545
|||||..|.||.||.||.|||||||||||||||||.||||||||.||.||
RBAM_024600__ 496 GACCCAAGCCACGCGGACGCATTTTATAATGCCGGGGTCGCTTACGCGTA 545
BSNT_03991___ 546 TAAAGAAAACCGAGAAAAAGCGCTTGAAATGCTGGACAAG--GCAATTGA 593
.||||||||.||.|||||.||||||||.||||||| ||| |||||.|.
RBAM_024600__ 546 CAAAGAAAATCGTGAAAAGGCGCTTGAGATGCTGG--AAGGCGCAATCGG 593
BSNT_03991___ 594 TATCCAGCCAGATCATATGCTTGCGCTTCATGCTAAAAAACTGATTGATC 643
.||.|||||.|||||||||||||||||||||||.|||.|.||.| |.|.|
RBAM_024600__ 594 CATACAGCCTGATCATATGCTTGCGCTTCATGCGAAACAGCTTA-TCACC 642
BSNT_03991___ 644 CA-TCATAA 651
|| ||||||
RBAM_024600__ 643 CAGTCATAA 651
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