Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03993 and RBAM_024620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_03993___yrvO.1.9828.seq
# -bsequence dna-align/RBAM_024620___yrvO.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03993___yrvO-RBAM_024620___yrvO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03993___yrvO-RBAM_024620___yrvO.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03993___yrvO
# 2: RBAM_024620___yrvO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1167
# Identity: 877/1167 (75.1%)
# Similarity: 877/1167 (75.1%)
# Gaps: 54/1167 ( 4.6%)
# Score: 3233.5
#
#
#=======================================
BSNT_03993___ 1 ATGGAACGGATTTATTTAGATCATGCCGCAACGTCTCCGATGGATGAGCG 50
|||||||||||||||||||||||||||||.||.||.||||||||||||||
RBAM_024620__ 1 ATGGAACGGATTTATTTAGATCATGCCGCGACTTCCCCGATGGATGAGCG 50
BSNT_03993___ 51 CGTGCTGGAAAAAATGATACCGCACTTCTCCGGCAGTTTCGGTAATCCCT 100
.|||||.|||.|.||||..||.||.||||.||||||||||||.||.||.|
RBAM_024620__ 51 TGTGCTCGAAGAGATGAAGCCCCATTTCTTCGGCAGTTTCGGCAACCCGT 100
BSNT_03993___ 101 CCAGTATTCATTCATTTGGCAGAGAATCTCGAAAATGGGTGGATGAAGCA 150
|.||.|||||||||||.||.||||||||.||.||||||||.||||||||.
RBAM_024620__ 101 CAAGCATTCATTCATTCGGGAGAGAATCCCGGAAATGGGTCGATGAAGCG 150
BSNT_03993___ 151 AGAGCGCAGATCGCAGC-AGAAATCGGAGCGGCAGAGCAGGAGATCATTT 199
||||||.|.||||| || .||||||.|.|||..|||.|||||.||.||||
RBAM_024620__ 151 AGAGCGGACATCGC-GCGCGAAATCAGTGCGAAAGAACAGGAAATTATTT 199
BSNT_03993___ 200 TTACAAGCGGGGGAACGGAAGCTGATAACTTGGCGATCATGGGAACCGCA 249
|.||||||||.||.|||||.||||||||.||.|||||..|.|||||.||
RBAM_024620__ 200 TCACAAGCGGCGGCACGGAGGCTGATAATTTAGCGATTTTCGGAACGGC- 248
BSNT_03993___ 250 CTTGC-------AAGAA--AAGATCTTGGCAGACATATCATCACAACAAA 290
||| ||||| || ||.|..||||||||.||.||...
RBAM_024620__ 249 --TGCCGCCCGGAAGAATGAA------GGAAAGCATATCATTACGACCGC 290
BSNT_03993___ 291 AATTGAGCATCACGCCGTGCTTCACACATGTGAAAAACTTGAGGAAGACG 340
.|||||||||||.||.||..|.|||.|.||.|||||.||.||.|||||||
RBAM_024620__ 291 TATTGAGCATCATGCTGTATTGCACGCCTGCGAAAAGCTGGAAGAAGACG 340
BSNT_03993___ 341 GATTTGACATAACGTATCT-------GGACGTTGACCAAAATGGAAGAGT 383
|.|||||..|.||.||.|| ||.|.||.| |||.|..|
RBAM_024620__ 341 GCTTTGAGGTGACATACCTCATCCCCGGCCCTTCA-------GGACGGAT 383
BSNT_03993___ 384 CAGTGCAAAACAGGTGAAAGAAGCACTGCGTGATGATACAATCCTTGTGA 433
|||||||||.||||||||||||||.||.||||||||||||||||||||.|
RBAM_024620__ 384 CAGTGCAAATCAGGTGAAAGAAGCGCTCCGTGATGATACAATCCTTGTTA 433
BSNT_03993___ 434 CAGTGATGTATGGAAATAATGAAGTTGGAACAGTGCAGCCGATCGAAGAA 483
|.||.||||||||.|||||.|||||.||.||..|.||||||||.||.|||
RBAM_024620__ 434 CCGTCATGTATGGCAATAACGAAGTCGGTACCATTCAGCCGATTGACGAA 483
BSNT_03993___ 484 ATCGGTGAGCTGTTAAAGGAACACAAAGCTTATTTTCATACCGATGCTGT 533
|||||.||||||||||..|..||..|.||.||||||||.||.|||||.||
RBAM_024620__ 484 ATCGGAGAGCTGTTAAGCGGGCATCAGGCCTATTTTCACACAGATGCCGT 533
BSNT_03993___ 534 TCAGGCATTCGGGTTGCTGCCAATTGATGTGAAAAACAGCCATATTGACC 583
.|||||||||||.|...||||.|||||.||||||||.|||...||||||.
RBAM_024620__ 534 CCAGGCATTCGGTTATATGCCGATTGACGTGAAAAAAAGCAGAATTGACA 583
BSNT_03993___ 584 TTCTGTCTGTTTCCGGGCACAAGCTCAACGGGCCAAAAGGGACAGGCTTT 633
|.||||||||||||||.||||||||.||||||||.|||||||||||||||
RBAM_024620__ 584 TGCTGTCTGTTTCCGGTCACAAGCTTAACGGGCCTAAAGGGACAGGCTTT 633
BSNT_03993___ 634 TTATATGCTAGTAAAGATGTGAAGCTTTCACCGCTTTTATTCGGAGGAGA 683
|||||||..|.|.||||.||||||||.||||||.||.|..||||.|||||
RBAM_024620__ 634 TTATATGTAAATCAAGAGGTGAAGCTGTCACCGATTCTTCTCGGGGGAGA 683
BSNT_03993___ 684 GCAAGAAAGAAAACGCCGTGCCGGAACCGAAAATGTTCCAGGCATTGTCG 733
|||.|||.||||.|||||.||.||.||.||||||||.||.|||||.|.||
RBAM_024620__ 684 GCAGGAACGAAAGCGCCGCGCGGGGACGGAAAATGTACCGGGCATCGCCG 733
BSNT_03993___ 734 GGCTGAAAGAAGCGATCAAGCTGTCAA---GTGAAGAACGGGACGAAAAA 780
|..|.|||||||||.||...||.|||| ||| ||| ||||.||.|||
RBAM_024620__ 734 GCTTAAAAGAAGCGGTCGTCCTTTCAAACCGTG-AGA--GGGAAGAGAAA 780
BSNT_03993___ 781 AACGAGAAGTATCAATCGTTTAA-AGCA--ATCTTTGCCGA-CACGCT-T 825
|..|.|||||||.|...|||||| |.|| |||.| || |||||| .
RBAM_024620__ 781 ACAGCGAAGTATAAGGAGTTTAAGAACATCATCAT----GAGCACGCTGG 826
BSNT_03993___ 826 AGAGATGCAGGTGTGGCATTCGAGATCAACGGGGACAAAGAGCATAGTCT 875
|.|.|| |.||.||..||...|||.|.|||||.||....|||.|..|.||
RBAM_024620__ 827 AAAAAT-CCGGCGTCACAGCGGAGGTGAACGGAGATGCCGAGAAATGCCT 875
BSNT_03993___ 876 GCCGCATGTTCTGAATCTTTATTTCCCCGGTGTGTCAGTGGAAGCGCTGC 925
|||.|||.||.|.||.|||||.||.|||||||||.|.|||||||||||||
RBAM_024620__ 876 GCCTCATATTTTAAACCTTTACTTTCCCGGTGTGCCGGTGGAAGCGCTGC 925
BSNT_03993___ 926 TGGTCAATCTTGATATGGCGGGTGTCGCTGTCTCCAGCGGTTCAGCGTGT 975
|||||||||||||.||||..||.||.||.|||||||||||.||.||.|||
RBAM_024620__ 926 TGGTCAATCTTGACATGGAAGGCGTTGCCGTCTCCAGCGGATCTGCTTGT 975
BSNT_03993___ 976 ACGGCCGGTTCAGTCCTGCCGTCACATGTTCTGACTGCTATGTTCGGCGA 1025
||.||.||.||.||.||.|||||.|||||.||.||.||.||||||| ||
RBAM_024620__ 976 ACAGCGGGATCCGTTCTTCCGTCCCATGTGCTTACGGCCATGTTCG--GA 1023
BSNT_03993___ 1026 A--GAGAGTGACCGGCTGACGTCCTCTATTCGAATCAGCTTCGGCCTCGG 1073
| |||||.|.|.|||||||.||.||.||.||..||||||||||||||||
RBAM_024620__ 1024 AGTGAGAGCGGCAGGCTGACTTCGTCAATCCGCCTCAGCTTCGGCCTCGG 1073
BSNT_03993___ 1074 CAATACGGCTGAGCAAGTGAAAACTGCTGCCAAACATGTGGCCGACGTTG 1123
|||||||||.||.|||.|..||||.||.|||.||.|..|.||||.|||.|
RBAM_024620__ 1074 CAATACGGCGGAACAAATCGAAACAGCCGCCGAAAAGCTTGCCGCCGTCG 1123
BSNT_03993___ 1124 TCAAACGGCTGACATAA 1140
|.||||||||..|.|||
RBAM_024620__ 1124 TTAAACGGCTTGCTTAA 1140
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