Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04000 and RBAM_024670

See Amino acid alignment / Visit BSNT_04000 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_04000___hisS.1.9828.seq
#    -bsequence dna-align/RBAM_024670___hisS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04000___hisS-RBAM_024670___hisS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04000___hisS-RBAM_024670___hisS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04000___hisS
# 2: RBAM_024670___hisS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity:    1058/1281 (82.6%)
# Similarity:  1058/1281 (82.6%)
# Gaps:          12/1281 ( 0.9%)
# Score: 4375.0
# 
#
#=======================================

BSNT_04000___      1 ATGGGATATAACATTCCGAGAGGAACACAGGATATTCTGCCTGGAGAATC     50
                     ||||.||||.|||||||.|||||.||||||||.||.|||||.||.|||||
RBAM_024670__      1 ATGGCATATCACATTCCAAGAGGCACACAGGACATACTGCCGGGTGAATC     50

BSNT_04000___     51 AGATCGCTGGCAGTATGTTGAACAAATTATGAGAGACACTTGCCGCACTT    100
                     |||..|.|||||||..||.||||||||||||||.||.||.||||||||||
RBAM_024670__     51 AGACAGATGGCAGTTCGTCGAACAAATTATGAGGGAGACGTGCCGCACTT    100

BSNT_04000___    101 ATCAATATAAAGAAATCCGCACACCGATTTTTGAGCATACAGAACTGTTT    150
                     ||||||||||||||||||||||.||||||||.||||||||.|||.||||.
RBAM_024670__    101 ATCAATATAAAGAAATCCGCACGCCGATTTTCGAGCATACGGAATTGTTC    150

BSNT_04000___    151 GCCAGAGGCGTCGGAGAATCAACGGATATCGTACAAAAAGAAATGTATAC    200
                     ||.|||||||||||.||.||.||.||||||||.||.|||||||||||.||
RBAM_024670__    151 GCAAGAGGCGTCGGTGAGTCTACAGATATCGTGCAGAAAGAAATGTACAC    200

BSNT_04000___    201 CTTCGAGGACCGCAAAGGCAGAAGCCTGACGCTTCGTCCGGAGGGAACAG    250
                     .||.||.|||||.|||||.|||||||||||||||||.|||||.|||||||
RBAM_024670__    201 GTTTGAAGACCGTAAAGGGAGAAGCCTGACGCTTCGGCCGGAAGGAACAG    250

BSNT_04000___    251 CTGCTGCGGTTCGCGCTTTTAATGAAAACAAGCTGTTCGCAAATCCTGTA    300
                     |.||.||.||.|||||.||.||||||||.||..|.||.||.||.||.||.
RBAM_024670__    251 CCGCCGCAGTCCGCGCGTTCAATGAAAATAAATTATTTGCGAACCCGGTG    300

BSNT_04000___    301 CAGCCGACAAAGCTTTATTATGTCGGGCCGATGTTCCGTTATGAACGTCC    350
                     ||||||||.|||||||||||||||||.||||||||||||||.||||||||
RBAM_024670__    301 CAGCCGACGAAGCTTTATTATGTCGGACCGATGTTCCGTTACGAACGTCC    350

BSNT_04000___    351 TCAGACGGGCCGTTACCGCCAGTTTTATCAGTTTGGAATTGAAGCGATTG    400
                     .|||||.||.||||.||||||.||.|||||.||.||||||||||||||.|
RBAM_024670__    351 GCAGACAGGGCGTTTCCGCCAATTCTATCAATTCGGAATTGAAGCGATCG    400

BSNT_04000___    401 GTTCGAAAGACCCTGCAATCGACGCTGAAGTAATGGCGCTTGCGATGAGT    450
                     |.||.|||||.||.||..|.||.||.|||||.||.|||||||||||||||
RBAM_024670__    401 GCTCCAAAGATCCGGCCGTGGATGCAGAAGTCATTGCGCTTGCGATGAGT    450

BSNT_04000___    451 ATTTATGAAAAAGCAGGTTTAGAAA-ACGTTAAGCTTGTCATAAACAGTC    499
                     |||||....|||||.||||| |||| |.||.||||||||..|.|||||.|
RBAM_024670__    451 ATTTACCGTAAAGCCGGTTT-GAAACATGTCAAGCTTGTGCTGAACAGCC    499

BSNT_04000___    500 TCGGCGATCAAGATAGCCGCAAAAGCTACAGAGAAGCGCTTGTGAAACAC    549
                     |.||.||.||.||.|||||||||..||||.|.||||||||.||.|||||.
RBAM_024670__    500 TTGGTGACCAGGACAGCCGCAAATCCTACCGGGAAGCGCTCGTCAAACAT    549

BSNT_04000___    550 TTCGAGCCTCGCATCGAAGAATTTTGTTCAGACTGCCAGTCCCGGCTGCA    599
                     ||.||.||.|||||||.|||.|||||.||||||||||||||.||.|||||
RBAM_024670__    550 TTTGAACCGCGCATCGGAGAGTTTTGCTCAGACTGCCAGTCGCGCCTGCA    599

BSNT_04000___    600 CACGAACCCGCTTAGAA-TCTTGGACTGCAAAAAAGACCGAGATCATGAG    648
                     |||.||||||||.|||| |||| ||||||||.||||||.||||.|||||.
RBAM_024670__    600 CACAAACCCGCTCAGAATTCTT-GACTGCAAGAAAGACAGAGAGCATGAA    648

BSNT_04000___    649 CTGATGAAATCGGCACCTTCGATT-TTGACATATTTAAATGAAGAATCAG    697
                     |||||||||.||||.||.||.||| |||| .||.||||||||||||||||
RBAM_024670__    649 CTGATGAAAACGGCTCCGTCCATTCTTGA-TTACTTAAATGAAGAATCAG    697

BSNT_04000___    698 CCGCTTATTTTGACAAAGTGAAACAATACTTAAATGATCTTGGCATTTCG    747
                     |||||||||||||.|||||.||||||||||||||.|||||.|||||..||
RBAM_024670__    698 CCGCTTATTTTGAGAAAGTAAAACAATACTTAAACGATCTCGGCATCCCG    747

BSNT_04000___    748 TATGAAATCGATCCGAACCTTGTGAGAGGGCTGGATTATTACAACCACAC    797
                     |..|||||.||||||||||||||.||||||||.||||||||.|||||.||
RBAM_024670__    748 TTCGAAATAGATCCGAACCTTGTCAGAGGGCTTGATTATTATAACCATAC    797

BSNT_04000___    798 CGCATTTGAAATTATGAGCAATGCGGAAGGCTTTGGCGCGATTACGACAC    847
                     |||.||||||||||||||||||||.|||||.||.||.||||||||.||.|
RBAM_024670__    798 CGCTTTTGAAATTATGAGCAATGCCGAAGGATTCGGAGCGATTACAACCC    847

BSNT_04000___    848 TTGCCGGCGGCGGACGCTACGACGGGCTTGTCGAACAGATCGGCGGACCT    897
                     ||||||||||.||.|||||.|||||||||||.||||||||||||||||||
RBAM_024670__    848 TTGCCGGCGGGGGCCGCTATGACGGGCTTGTTGAACAGATCGGCGGACCT    897

BSNT_04000___    898 GAAGCACCGGGCATCGGATTTGCGATGAGCATCGAACGCTTGCTTGCCGC    947
                     |||||.|||||.||||||||||||||||||||||||||..||||.||.||
RBAM_024670__    898 GAAGCGCCGGGTATCGGATTTGCGATGAGCATCGAACGTCTGCTGGCAGC    947

BSNT_04000___    948 AATTGATGCTGAAAAAAGAGAGCTGCCTGTTGATAAGGGAATCGACTGCT    997
                     .|||||.|||||.||||.||||||.||.||..||.||||.||.|||||||
RBAM_024670__    948 CATTGACGCTGAGAAAACAGAGCTTCCCGTCAATCAGGGGATTGACTGCT    997

BSNT_04000___    998 ATATCGTCACACTCGGCGAAAAAGCAAAGGATTATTCTGTTTCATTGGTG   1047
                     |.|||||.||.|||||.||||||||.|||||||||||.|||||..|.|||
RBAM_024670__    998 ACATCGTGACGCTCGGAGAAAAAGCGAAGGATTATTCCGTTTCCCTCGTG   1047

BSNT_04000___   1048 TACAAACTGAGAGAAGCAGGCATTTCCAGTGAAATCGATTATGAAAATAA   1097
                     |||||||||||||||||.|||||.||.|||||||||||||||||||||||
RBAM_024670__   1048 TACAAACTGAGAGAAGCGGGCATCTCAAGTGAAATCGATTATGAAAATAA   1097

BSNT_04000___   1098 GAAAATGAAAGGCCAGTTTAAAACAGCTGATCGCTTAAATGCCAGATTTA   1147
                     .||.|||||.|||||.||||||||.|||||.|||.|....||..|.||||
RBAM_024670__   1098 AAAGATGAAGGGCCAATTTAAAACGGCTGACCGCCTCGGCGCACGTTTTA   1147

BSNT_04000___   1148 TTGCGATTTTGGGTGAAGATGAGCTTGCCCAAAACAAAATCAATGTAAAG   1197
                     ||||||||||.||.||||||||||||||||||||.||||||||||||||.
RBAM_024670__   1148 TTGCGATTTTAGGGGAAGATGAGCTTGCCCAAAATAAAATCAATGTAAAA   1197

BSNT_04000___   1198 GATGCACAGACGGGCGAACAGATTGAAGTGGCACTTGATGAATTTATACA   1247
                     |||||..|.||.||.||.|||..||||||||...|.||.||..|.|||||
RBAM_024670__   1198 GATGCGGAAACAGGAGAGCAGCGTGAAGTGGTGTTAGACGAGCTGATACA   1247

BSNT_04000___   1248 TGTGATGAAGGCAAACCAAA---AGGGATAA   1275
                     .|||.|.||||||.|.||||   ||.||   
RBAM_024670__   1248 AGTGTTAAAGGCAGATCAAAAGCAGTGA---   1275


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