Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04002 and RBAM_024690
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_04002___yrvJ.1.9828.seq
# -bsequence dna-align/RBAM_024690___yrvJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04002___yrvJ-RBAM_024690___yrvJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04002___yrvJ-RBAM_024690___yrvJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04002___yrvJ
# 2: RBAM_024690___yrvJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1769
# Identity: 1119/1769 (63.3%)
# Similarity: 1119/1769 (63.3%)
# Gaps: 289/1769 (16.3%)
# Score: 3635.5
#
#
#=======================================
BSNT_04002___ 1 TTGCACACCTTTTTGATTGTATTTACGCTTAGTATAAACAAATCATTTTA 50
RBAM_024690__ 0 -------------------------------------------------- 0
BSNT_04002___ 51 TTTTTATTTAAAAATCAGAAAGGACTTTACGATATTAAACAAGAATGCTT 100
RBAM_024690__ 0 -------------------------------------------------- 0
BSNT_04002___ 101 TTTTAATGATCATCAGAAAGGAGGACACAATGAACAAGAAATACT-TTGT 149
|||||.||||.| ||| |||.
RBAM_024690__ 1 -----------------------------ATGAAGAAGAGA-ACTCTTGC 20
BSNT_04002___ 150 CCTTATTGTATGTATTATTTTCACCGCAGCGCTATTCCCGACCTTTTCAT 199
.||||||.||||.....|..|||.|.|||||||..|.||| ||||
RBAM_024690__ 21 TCTTATTTTATGCGGCGTCATCATCACAGCGCTTCTTCCG------TCAT 64
BSNT_04002___ 200 ------CCGTTACAGCTGCTCAAGGAGAAGCGGTCATCGCAACAGATGAA 243
|||..|..||.||..|.|||||||||||||||||.|||||..|.
RBAM_024690__ 65 TCCACACCGCAATCGCCGCAGAGGGAGAAGCGGTCATCGCGACAGACAAG 114
BSNT_04002___ 244 ACGAACGTCAGAAGCGGCCCTGGGCTTAGCTACGGCATTACAGCGGAAGT 293
|..||.||||||.||||.||.||.||.|||||.||.||||..||.|||||
RBAM_024690__ 115 ATCAATGTCAGAGGCGGTCCCGGCCTGAGCTATGGAATTAAGGCTGAAGT 164
BSNT_04002___ 294 AAAAAAGGGAGAACGCTATCCAAT-TTTAAAGGAAGATGGAGACTGGGTG 342
||||||.||.|||.|.||.||.|| ..|||| |||||.||||||||||||
RBAM_024690__ 165 AAAAAAAGGGGAAAGATACCCGATCGCTAAA-GAAGAGGGAGACTGGGTG 213
BSNT_04002___ 343 CAGATACAGCTTGGTTCCGGAGAAAAGGGCTGGGTAGTCTCCTGGCTTAT 392
|||.|.|||||..|..||||..|||..||.|||||.||.||||||||.||
RBAM_024690__ 214 CAGCTTCAGCTGAGCCCCGGTAAAACCGGATGGGTCGTTTCCTGGCTGAT 263
BSNT_04002___ 393 TACAAA-------GGAAGACCAGGCCA-------GC-ACAAGCTCCTCAG 427
..|||| ||..||.|||.||| || |||||| |
RBAM_024690__ 264 ATCAAAAACAGCCGGGGGAGCAGACCATTCATCCGCAACAAGC------G 307
BSNT_04002___ 428 GAAGCAGTGACACTGTGACATCAACAGACCCCGATCTGCGGATGAGAAGC 477
|| ||.||.||.||.||.||.||.||.||.||.||.||||..
RBAM_024690__ 308 GA---------ACGGTCACTTCCACCGATCCTGACCTCCGCATCAGAAAA 348
BSNT_04002___ 478 GGCCCGGGCACTTCCTACGAAGTCATCGGCAAATTCCCGCAAGGCAGC-C 526
||||||||.||.||.||.|||||||||||||||.|.||||||||| || |
RBAM_024690__ 349 GGCCCGGGGACATCATATGAAGTCATCGGCAAACTTCCGCAAGGC-GCAC 397
BSNT_04002___ 527 AAGCATCTGTCATTGATAA----AGATTCGGGCTGGATCAAGATATCCTA 572
|.|||||.||..|.||.|| || .||.|||.|.||.||.||.||
RBAM_024690__ 398 ATGCATCCGTGCTGGACAAGAACAG----CGGATGGGTGAACATTTCTTA 443
BSNT_04002___ 573 TCACAGTGCCACCGGGTGGGTATCATCTGAATATGTCACATCAGGAGGCA 622
|||..|..|.|||||.|||||.||.||.|||||.|||||..| |||
RBAM_024690__ 444 TCAAGGCACAACCGGATGGGTTTCTTCCGAATACGTCACCGC-GGA---- 488
BSNT_04002___ 623 GCAGTTCAGCGTCTGATGAGAGTGACCAAACCGAGGATTCCG------GT 666
|||||.|.|||..|| .||.|||.|.| .||||| |.
RBAM_024690__ 489 ------CAGCGGCGGATCGGA--TACGAAAGCCA--CTTCCGCCCGAAGC 528
BSNT_04002___ 667 GCGTC-AACGACGGGCACAGTCGGTGTTTCTTCGCTAAATGTAAGAGCCT 715
|.||| ||..||||| ||.|||||.||||||||..|.|||||.|||....
RBAM_024690__ 529 GGGTCAAAAAACGGG-ACTGTCGGCGTTTCTTCATTGAATGTCAGAAGTG 577
BSNT_04002___ 716 CCGCCTCACATGACGCGGCAATTATAACAAAACTTGAT--CGCGGAACGA 763
|.||.||||||||..|.||.|||||.||.||| |.|| ||||||||.|
RBAM_024690__ 578 CAGCGTCACATGATTCAGCGATTATGACTAAA--TTATCACGCGGAACAA 625
BSNT_04002___ 764 AACTGACGGT-----TCTCAACGAGAAAA--ATGGCTGGGCT-CACATTG 805
| ||| |||.|| |.|||.| |.|||| |||| .|.||||
RBAM_024690__ 626 A------GGTTTCCATCTTAA-GTGAAGACCACGGCT-GGCTGAAAATTG 667
BSNT_04002___ 806 AGGTGAACGGGCTAAAAGGCTGGGTTGCAAGCCATTAC----------CT 845
|.|..|||||||.|||||||||||..||||||||.||| .|
RBAM_024690__ 668 AAGCAAACGGGCAAAAAGGCTGGGCAGCAAGCCACTACATCATAAAGGAT 717
BSNT_04002___ 846 TTTGACT--------AGTTCTGTTCCAGCT-----GATGATTCAGCAAAT 882
|.||||| || |...|||.||| ||.|.||| |
RBAM_024690__ 718 TCTGACTCATCGGACAG--CGCATCCGGCTCGGGAGACGGTTC------T 759
BSNT_04002___ 883 GCCGGCAGTTCATCCTCCGCTAAAAAAGCCTATATCATGTACGGAGGAAC 932
||.||| |||..||||.|.||||||||.|||||..|.|||||.||.||
RBAM_024690__ 760 GCGGGC---TCAGGCTCCTCGAAAAAAGCGTATATTGTTTACGGCGGCAC 806
BSNT_04002___ 933 GAATCTAAGAAGTGATGCGTCAACATCAGCTTCAATCGTTGAGCGTGCTG 982
.||..||||.||....||.||.||.||.|||||.|||||..|..|.||.|
RBAM_024690__ 807 CAACTTAAGGAGCTCGGCCTCGACTTCCGCTTCTATCGTAAAAAGAGCAG 856
BSNT_04002___ 983 CCAAAGGAGATTCATACACCATTACCGGTTCAAAGGGAAGCTGGTATGAA 1032
..|||||.|...|.|||.|.|||..|||.||||..||.|..|||||||||
RBAM_024690__ 857 ATAAAGGCGCAGCCTACCCGATTGTCGGCTCAAGCGGCAAATGGTATGAA 906
BSNT_04002___ 1033 ATAAAGCTTGATAACGGGCAAACTGCTTATGTAGCCAATTGGGTGGTCCA 1082
.|...||||||.|||||.|||||.||.|||||.||.||.|||||.||.||
RBAM_024690__ 907 GTCCGGCTTGAAAACGGACAAACCGCATATGTGGCAAACTGGGTCGTACA 956
BSNT_04002___ 1083 AACGTCTAAAAGCGCAGAAGAAGCAGGTGAACCGCCAGTCT-CTGATTCC 1131
|||||..|||||||..||.|||.||||||||.|.|| .||| |.|| |
RBAM_024690__ 957 AACGTTAAAAAGCGGTGAGGAAACAGGTGAAGCACC-TTCTCCCGA---C 1002
BSNT_04002___ 1132 CCGTC---TGGAAACGGCTCTCTAAACAATAAAACGATTATTGTTGACCC 1178
.|||| .||.|.||||||.||.||.||.|||||.||..|.|||||.||
RBAM_024690__ 1003 ACGTCAGGCGGCAGCGGCTCACTTAAAAACAAAACAATCGTCGTTGATCC 1052
BSNT_04002___ 1179 GGGACATGGAGGAAAAGACAGCGGAACGATCGGGTATTCGGGGAAATTCG 1228
.|||||.||||||||||||||||||||||||||.||.||.||.||.||.|
RBAM_024690__ 1053 CGGACACGGAGGAAAAGACAGCGGAACGATCGGCTACTCCGGAAAGTTTG 1102
BSNT_04002___ 1229 AGAAAAACCTGACGATCAAAACGGCAAAACTGCTCGCCAGCAAACTTAGA 1278
||||||||.|.||.||.|||||.||.||.|||||.||| ||||..|.|
RBAM_024690__ 1103 AGAAAAACGTAACCATTAAAACCGCTAAGCTGCTGGCC--CAAAAATTG- 1149
BSNT_04002___ 1279 TCG----GCTGGAGCGGA--TGTATATGTGACAC--GCCAGGATGATACC 1320
|| ||.||.||..| ||||||| ||| |.|||||||||||.
RBAM_024690__ 1150 -CGGGCCGCCGGTGCAAACGTGTATAT----CACCAGACAGGATGATACT 1194
BSNT_04002___ 1321 TTTGTCAGCCTGCAGTCACGGGTCTCTACCTCTCACTACCGTAACGCTGA 1370
|||.|||||||||||.|..||||.||.||||||||.|||||.||.||.||
RBAM_024690__ 1195 TTTATCAGCCTGCAGGCCAGGGTTTCAACCTCTCATTACCGGAATGCGGA 1244
BSNT_04002___ 1371 CGCCTTTATCAGCATTCATTATGACAGCTATGCGGATACCTCTACAAGAG 1420
.|||||||||||||||||.||||||||||||||.|||||.||.|||.|.|
RBAM_024690__ 1245 TGCCTTTATCAGCATTCACTATGACAGCTATGCCGATACGTCAACACGGG 1294
BSNT_04002___ 1421 GCAGTACAGCATATTACTACAGTCCTGCCAAAGATCAGGAACTCGCATCA 1470
|.||.||.||.|||||.||||||||..|.||.||||...|.||.||.|||
RBAM_024690__ 1295 GAAGCACGGCTTATTATTACAGTCCGTCTAAGGATCGCCAGCTTGCCTCA 1344
BSNT_04002___ 1471 GATGTCCACTCAGAAGTGGTGAAGCGTTCTTCCATTCCAGACCGCGGCGT 1520
||.|||||.||.|||||.|||||||||||..|.||.||.||.||||||||
RBAM_024690__ 1345 GACGTCCATTCTGAAGTAGTGAAGCGTTCCCCTATCCCGGATCGCGGCGT 1394
BSNT_04002___ 1521 ATTATTCGGAGATTATTATGTGCTCCGGGAAAACAGACAGCCCGCTATGC 1570
..|.||.||.||||||||.||.||..|||||||.|.||||||.||.||||
RBAM_024690__ 1395 TCTGTTTGGCGATTATTACGTCCTGAGGGAAAATAAACAGCCTGCCATGC 1444
BSNT_04002___ 1571 TGTACGAGCTGGGATATGTAAGCCATCCGCAGGAAGAAGCCATTGTACAT 1620
||||.|||||.||.|||.|.||.||.|||||.||||||.|.||..|||||
RBAM_024690__ 1445 TGTATGAGCTCGGCTATCTCAGTCAACCGCAAGAAGAAACAATCATACAT 1494
BSNT_04002___ 1621 AGCAATTCATACCAAGAAAAAGTAACAGATGGGATCGAAAGCGGATTAGA 1670
|||...||.||.||.||||||||.|||||.||.||.|||||||||||.||
RBAM_024690__ 1495 AGCGGCTCTTATCAGGAAAAAGTGACAGACGGAATTGAAAGCGGATTGGA 1544
BSNT_04002___ 1671 GAAATACTTCCAATAA--- 1686
..|.||.||.||||.|
RBAM_024690__ 1545 ACATTATTTTCAATCATAA 1563
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