Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04004 and RBAM_024710
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:20
# Commandline: needle
# -asequence dna-align/BSNT_04004___relA.1.9828.seq
# -bsequence dna-align/RBAM_024710___relA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04004___relA-RBAM_024710___relA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04004___relA-RBAM_024710___relA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04004___relA
# 2: RBAM_024710___relA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2207
# Identity: 1861/2207 (84.3%)
# Similarity: 1861/2207 (84.3%)
# Gaps: 4/2207 ( 0.2%)
# Score: 7916.0
#
#
#=======================================
BSNT_04004___ 1 ATGGCGAACGAACAAGTATTGACTGCCGAGCAAGTTATAGATAAAGCGCG 50
|||||||||||||||||||||||||||||||||||.||||||||||||||
RBAM_024710__ 1 ATGGCGAACGAACAAGTATTGACTGCCGAGCAAGTAATAGATAAAGCGCG 50
BSNT_04004___ 51 CAGCTATCTATCTGATGAGCATATCGCATTTGTCGAAAAAGCATATCTGT 100
||..|||||..|.||.|||||.||.||.|||||.||.|||||.||.||||
RBAM_024710__ 51 CACTTATCTGCCGGAGGAGCAGATTGCGTTTGTTGAGAAAGCTTACCTGT 100
BSNT_04004___ 101 ACGCTGAAGATGCTCATCGCGAGCAATACCGCAAATCGGGCGAGCCATAT 150
|.||..||.|.||.||||||||.||.||||||||||||||.|||||.||.
RBAM_024710__ 101 ATGCGCAAAACGCGCATCGCGAACAGTACCGCAAATCGGGTGAGCCGTAC 150
BSNT_04004___ 151 ATTATTCATCCGATTCAGGTTGCGGGGATTCTCGTCGATCTTGAAATGGA 200
||.|||||||||||||||||.||||||||.|||||||||||.||||||||
RBAM_024710__ 151 ATCATTCATCCGATTCAGGTGGCGGGGATCCTCGTCGATCTGGAAATGGA 200
BSNT_04004___ 201 CCCTTCCACAATCGCGGGCGGATTTTTGCACGATGTCGTGGAAGATACAG 250
||||||||||||.||||||||||||.||||.||.||.||.||.||.||.|
RBAM_024710__ 201 CCCTTCCACAATTGCGGGCGGATTTCTGCATGACGTGGTAGAGGACACGG 250
BSNT_04004___ 251 ATGTGACGCTCGATGACCTGAAAGAAGCATTTTCCGAAGAAGTGGCAATG 300
||||.||.|||||.||||||||.|||||||||||.|||||||||||.|||
RBAM_024710__ 251 ATGTCACCCTCGACGACCTGAAGGAAGCATTTTCTGAAGAAGTGGCGATG 300
BSNT_04004___ 301 CTTGTAGACGGCGTAACGAAACTCGGCAAAATTAAATATAAATCTCAAGA 350
|||||.||||||||.|||||.|||||.||||||||.||||||||||||||
RBAM_024710__ 301 CTTGTCGACGGCGTGACGAAGCTCGGTAAAATTAAGTATAAATCTCAAGA 350
BSNT_04004___ 351 GGAACAGCAGGCGGAAAATCATCGCAAAATGTTTGTCGCTATGGCTCAAG 400
|||.||||||||||||||.|||||.|||||||||||||||||||||||.|
RBAM_024710__ 351 GGAGCAGCAGGCGGAAAACCATCGAAAAATGTTTGTCGCTATGGCTCAGG 400
BSNT_04004___ 401 ATATCAGGGTCATATTGATCAAGCTGGCGGATCGTCTTCACAATATGCGG 450
|||||||.||||||||||||||||||||||||||.|||||||||||||||
RBAM_024710__ 401 ATATCAGAGTCATATTGATCAAGCTGGCGGATCGCCTTCACAATATGCGG 450
BSNT_04004___ 451 ACACTGAAACATCTGCCTCAGGAAAAACAGCGGAGAATCTCCAATGAAAC 500
||..|.||.|||||.||.||||||||.|||||||||||.||.|||||.||
RBAM_024710__ 451 ACGTTAAAGCATCTTCCGCAGGAAAAGCAGCGGAGAATTTCAAATGAGAC 500
BSNT_04004___ 501 GCTGGAAATTTTTGCTCCTTTGGCGCATCGTCTCGGGATTTCAAAAATTA 550
||||||||||||.|||||..||||.|||||.|||||||||||.|||||.|
RBAM_024710__ 501 GCTGGAAATTTTCGCTCCGCTGGCCCATCGGCTCGGGATTTCTAAAATCA 550
BSNT_04004___ 551 AGTGGGAATTGGAAGATACGGCGCTCCGTTATTTGAACCCTCAACAATAT 600
|.|||||..|||||||.||.||.||||||||||||||.|||||.||||||
RBAM_024710__ 551 AATGGGAGCTGGAAGACACCGCTCTCCGTTATTTGAATCCTCAGCAATAT 600
BSNT_04004___ 601 TACAGAATTGTCAACCTCATGAAGAAGAAACGTGCAGAACGTGAGCTTTA 650
||||||||.|||||||||||||||||.||.||.||.|||||.||.|||||
RBAM_024710__ 601 TACAGAATCGTCAACCTCATGAAGAAAAAGCGCGCGGAACGCGAACTTTA 650
BSNT_04004___ 651 TGTTGATGAGGTTGTCAATGAAGTGAAGAAACGTGTCGAAGAAGTAAATA 700
|||.||.||||||||||||||||||||.|||||.|||||||||||.||||
RBAM_024710__ 651 TGTCGAAGAGGTTGTCAATGAAGTGAAAAAACGCGTCGAAGAAGTGAATA 700
BSNT_04004___ 701 TCAAGGCTGACTTCTCGGGACGCCCGAAACATATTTACAGCATTTATCGA 750
||||.||.|||||.||.|||||.|||||.|||||.|||||||||||.||.
RBAM_024710__ 701 TCAAAGCGGACTTTTCAGGACGTCCGAAGCATATCTACAGCATTTACCGC 750
BSNT_04004___ 751 AAAATGGTGCTGCAAAATAAGCAATTCAATGAGATTTACGATTTGCTGGC 800
||.||||.||||||||||||.||.||||||||.||.||.|||.||||.||
RBAM_024710__ 751 AAGATGGCGCTGCAAAATAAACAGTTCAATGAAATATATGATCTGCTTGC 800
BSNT_04004___ 801 TGTCCGTATTCTTGT--GAACAGCATAAAGGACTGCTACGCGGTGCTTGG 848
.|||||||||||||| || |||||.||.|||||||||||.||.||.||
RBAM_024710__ 801 CGTCCGTATTCTTGTCGGA--AGCATTAAAGACTGCTACGCCGTCCTCGG 848
BSNT_04004___ 849 CATCATTCACACATGCTGGAAACCGATGCCCGGCAGATTCAAAGATTATA 898
|||.|||||.||.||||||||.||||||||.|||||||||||||||||||
RBAM_024710__ 849 CATTATTCATACGTGCTGGAAGCCGATGCCGGGCAGATTCAAAGATTATA 898
BSNT_04004___ 899 TCGCAATGCCGAAGCCGAATATGTATCAATCGCTTCATACAACGGTTATT 948
|.||.|||||.|||||||||||||||||.|||||.|||||.||.||.||.
RBAM_024710__ 899 TTGCGATGCCTAAGCCGAATATGTATCAGTCGCTGCATACGACCGTAATC 948
BSNT_04004___ 949 GGGCCTAAAGGCGATCCGCTTGAAGTGCAGATCCGCACCTTTGAAATGCA 998
||||||||||||||||||||.||||||||||||.|.||.|||||.|||||
RBAM_024710__ 949 GGGCCTAAAGGCGATCCGCTGGAAGTGCAGATCAGAACGTTTGAGATGCA 998
BSNT_04004___ 999 TGAAATAGCGGAATACGGGGTTGCGGCTCACTGGGCTTATAAAGAAGGAA 1048
|||.||.||.|||||||||||.||.||.||||||||.|||||||||||.|
RBAM_024710__ 999 TGAGATCGCTGAATACGGGGTGGCCGCACACTGGGCATATAAAGAAGGCA 1048
BSNT_04004___ 1049 AAGCAGCCAATGAAGGTGCAACCTTTGAGAAAAAGCTTTCTTGGTTCCGT 1098
|.||.||.||.||||..||.||.|||||||||||.||.||.|||||||||
RBAM_024710__ 1049 AGGCTGCAAACGAAGAAGCGACATTTGAGAAAAAACTGTCCTGGTTCCGT 1098
BSNT_04004___ 1099 GAAATTTTAGAATTTCAAAATGAATCGACAGATGCAGAAGAATTTATGGA 1148
||||||.|.|||||.|||||.||.||.||.|||||.||||||||||||||
RBAM_024710__ 1099 GAAATTCTGGAATTCCAAAACGAGTCTACCGATGCGGAAGAATTTATGGA 1148
BSNT_04004___ 1149 ATCGCTCAAAATTGATTTGTTCTCTGATATGGTGTATGTCTTTACGCCAA 1198
||||||.|||||.|||.||||.|||||.|||||.||.||.||||||||||
RBAM_024710__ 1149 ATCGCTGAAAATCGATCTGTTTTCTGACATGGTATACGTATTTACGCCAA 1198
BSNT_04004___ 1199 AAGGAGATGTAATCGAGCTTCCGTCCGGTTCTGTTCCGATTGATTTTTCT 1248
||||.|||||.||.||.||.||.||.||.|||||.||||||||||||||.
RBAM_024710__ 1199 AAGGCGATGTCATTGAACTGCCATCAGGCTCTGTGCCGATTGATTTTTCC 1248
BSNT_04004___ 1249 TACCGGATTCACTCTGAAATCGGCAATAAAACAATCGGTGCCAAAGTAAA 1298
|||.||||.|||||.||.||||||||.|||||||||||.||.|||||.||
RBAM_024710__ 1249 TACAGGATCCACTCGGAGATCGGCAACAAAACAATCGGGGCGAAAGTGAA 1298
BSNT_04004___ 1299 CGGAAAAATGGTTACGCTTGACCATAAGCTTCGGACAGGTGATATCGTTG 1348
||||||||||||.|||||||||||||||||.|||||.||.||.|||||.|
RBAM_024710__ 1299 CGGAAAAATGGTGACGCTTGACCATAAGCTCCGGACGGGCGACATCGTCG 1348
BSNT_04004___ 1349 AAATTCTCACCTCTAAGCATTCCTACGGTCCGAGCCAGGATTGGGTGAAG 1398
|.|||||.||.||.||||||||.|||||||||||.||.||.|||||.||.
RBAM_024710__ 1349 AGATTCTGACGTCCAAGCATTCTTACGGTCCGAGTCAAGACTGGGTCAAA 1398
BSNT_04004___ 1399 CTTGCCCAAACATCCCAAGCGAAGCATAAAATCCGTCAATTCTTTAAGAA 1448
||.||.||.||.|||||.|||||.||.||||||||.||||||||||||||
RBAM_024710__ 1399 CTGGCGCAGACGTCCCAGGCGAAACACAAAATCCGCCAATTCTTTAAGAA 1448
BSNT_04004___ 1449 ACAGCGGCGTGAAGAAAATGTCGAAAAAGGCCGTGAGTTGGTCGAAAAAG 1498
||||||.|||||||||||.||||||||||||||||||.|.|||||.||||
RBAM_024710__ 1449 ACAGCGCCGTGAAGAAAACGTCGAAAAAGGCCGTGAGCTTGTCGAGAAAG 1498
BSNT_04004___ 1499 AAATTAAAAACCTGGATTTTGAATTGAAGGATGTTTTAACGCCGGAGAAT 1548
||||||||||.||.|||||||||.||||.|||||||||||.|..||.|||
RBAM_024710__ 1499 AAATTAAAAATCTTGATTTTGAAGTGAAAGATGTTTTAACACTCGAAAAT 1548
BSNT_04004___ 1549 ATTCAAAAGGTTGCTGACAAATTTAATTTCTCAAATGAAGAGGATATGTA 1598
.|||||||.|||||.|||||.||.||||||||||||||||||||||||||
RBAM_024710__ 1549 CTTCAAAAAGTTGCCGACAAGTTCAATTTCTCAAATGAAGAGGATATGTA 1598
BSNT_04004___ 1599 CGCGGCGGTCGGTTACAACGGCATTACTGCTCTGCAGGTGGCGAACCGCC 1648
||||||||||||.||.|||||||||||.|||||.||||||||.|||.|.|
RBAM_024710__ 1599 CGCGGCGGTCGGATATAACGGCATTACCGCTCTTCAGGTGGCCAACAGGC 1648
BSNT_04004___ 1649 TAACAGAAAAAGAGAGAAAGCAGCGCGATCAGGAAGAACAGGAAAAGATC 1698
|.||.||||||||..|.||||..||.||.||||||||.||||||||.|||
RBAM_024710__ 1649 TCACCGAAAAAGAACGGAAGCTCCGTGACCAGGAAGAGCAGGAAAAAATC 1698
BSNT_04004___ 1699 GTTCAGGAAGTTACTGGGGAACCTAAGCCGTACCCGCAAGGAAGAAAACG 1748
|||||||||||.|||...||.||.||.|..||.||||||||.||||||||
RBAM_024710__ 1699 GTTCAGGAAGTCACTTCCGAGCCGAAACATTATCCGCAAGGGAGAAAACG 1748
BSNT_04004___ 1749 GGAAGCTGGCGTTCGTGTCAAGGGCATCGACAACCTCCTTGTCCGTTTAT 1798
||||||.||.||.||.||.||.|||||.||||||||.||.|||||.||.|
RBAM_024710__ 1749 GGAAGCGGGTGTGCGCGTAAAAGGCATTGACAACCTTCTCGTCCGCTTGT 1798
BSNT_04004___ 1799 CAAAATGCTGCAATCCTGTGCCAGGTGATGATATTGTCGGCTTTATCACA 1848
|.|||||||||||.||.|||||.||.||..||||||||||.|||||.|||
RBAM_024710__ 1799 CGAAATGCTGCAACCCGGTGCCTGGCGACCATATTGTCGGTTTTATTACA 1848
BSNT_04004___ 1849 AAAGGCAGAGGGGTTTCGGTCCATCGCGAAGACTGTCCGAATGTCAAAAC 1898
|||||..|.||.||.||.||.||.||.||.|||||||||||.||||||||
RBAM_024710__ 1849 AAAGGGCGCGGTGTATCTGTTCACCGGGATGACTGTCCGAACGTCAAAAC 1898
BSNT_04004___ 1899 GAATGAAGCCCAAGAGCGGCTGATCCCGGTAGAGTGGGAGCATGAGTCAC 1948
|||||||||.||.||.||.||||||||.||.||.|||||||||||.||||
RBAM_024710__ 1899 GAATGAAGCGCAGGAACGTCTGATCCCCGTTGAATGGGAGCATGAATCAC 1948
BSNT_04004___ 1949 AGGTTCAAAAGCGCAAGGAATACAATGTTGAGATAGAGATTCTTGGGTAT 1998
|||||||||..|||||.|||||.||.||||||||.||||||.|.||||||
RBAM_024710__ 1949 AGGTTCAAAGACGCAAAGAATATAACGTTGAGATTGAGATTTTGGGGTAT 1998
BSNT_04004___ 1999 GACCGCCGCGGATTGCTGAACGAGGTGCTGCAGGCAGTGAATGAAACGAA 2048
|||||.|.|||..|..|.||.||||||||.||.||.||.|||||||||||
RBAM_024710__ 1999 GACCGTCTCGGGCTTTTAAATGAGGTGCTCCAAGCCGTAAATGAAACGAA 2048
BSNT_04004___ 2049 AACAAATATTTCATCTGTCTCTGGCAAATCGGATCGCAATAAAGTGGCAA 2098
|||.||.||.||.||||||||.||||||||.||.|||||||||||.||.|
RBAM_024710__ 2049 AACCAACATCTCCTCTGTCTCCGGCAAATCCGACCGCAATAAAGTCGCTA 2098
BSNT_04004___ 2099 CCATTCATATGGCGATTTTTATTCAGAATATCAATCACTTGCACAAAGTC 2148
|.|||||||||||||||||||||||.||.||||||||..||||||||||.
RBAM_024710__ 2099 CGATTCATATGGCGATTTTTATTCAAAACATCAATCATCTGCACAAAGTG 2148
BSNT_04004___ 2149 GTCGAGCGTATTAAACAGATTAGAGATATCTACTCTGTGCGCCGCGTCAT 2198
||||||||.|||||.|||||.|||||.|||||.||.||.|||||.||.||
RBAM_024710__ 2149 GTCGAGCGGATTAAGCAGATCAGAGACATCTATTCAGTCCGCCGGGTAAT 2198
BSNT_04004___ 2199 GAACTAA 2205
|||||||
RBAM_024710__ 2199 GAACTAA 2205
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