Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04020 and RBAM_024830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04020___queA.1.9828.seq
# -bsequence dna-align/RBAM_024830___queA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04020___queA-RBAM_024830___queA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04020___queA-RBAM_024830___queA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04020___queA
# 2: RBAM_024830___queA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1038
# Identity: 809/1038 (77.9%)
# Similarity: 809/1038 (77.9%)
# Gaps: 18/1038 ( 1.7%)
# Score: 3135.0
#
#
#=======================================
BSNT_04020___ 1 ATGAAAGTCGATTTATTTGATTTTGAACTACCAGAACGTTTAATTGCACA 50
|||||||||||||||||||||||||||||.||.|||||..|.|||||.||
RBAM_024830__ 1 ATGAAAGTCGATTTATTTGATTTTGAACTGCCTGAACGCCTCATTGCCCA 50
BSNT_04020___ 51 AGTACCG-TTGGAGCAGCGTGATGCTTCAAGGCTGATGGTGCTCGATAAA 99
|||.||| ||..|| |||||||.||.||..||||||||||||||||.|||
RBAM_024830__ 51 AGTGCCGCTTAAAG-AGCGTGACGCATCGCGGCTGATGGTGCTCGACAAA 99
BSNT_04020___ 100 CATACAGGAGAGCTTACTGACAGCTCGTTTAAACACATTATCAGCTTCTT 149
||.||.||.|.|||.||.|||||.||.||||||.|.|||.|.|||||.||
RBAM_024830__ 100 CAGACGGGCGGGCTGACGGACAGTTCATTTAAAGAGATTGTAAGCTTTTT 149
BSNT_04020___ 150 TAACGAAGGCGATTGTCTAGTCCTGAACAATACCCGGGTACTGCCTGCGC 199
|||.|||||.|||||.||.|||.|||||||||||||.||.||||||||..
RBAM_024830__ 150 TAATGAAGGGGATTGCCTCGTCTTGAACAATACCCGTGTGCTGCCTGCAA 199
BSNT_04020___ 200 GGTTATTCGGCACAAAAGAGGATACCGGCGCGAAAGTGGAACTTCTTTTG 249
|.|||||||||||||||||.|||||.||.|||||||||||.|||||.||.
RBAM_024830__ 200 GATTATTCGGCACAAAAGAAGATACGGGAGCGAAAGTGGAGCTTCTGTTA 249
BSNT_04020___ 250 TTGAAACAGGAAACCGG----TGATAAATGGGAAACACTTGCCAAACCGG 295
||.||||||||| | |||||.|||||||||.||.|..||.||||
RBAM_024830__ 250 TTAAAACAGGAA----GAAAATGATACATGGGAAACGCTCGTAAAGCCGG 295
BSNT_04020___ 296 CGAAACGGGTGAAAAAAGGAACTGTTGTCACATTTGGAGACGGAAGATTG 345
|||||||.||.|||||||||||.||..|.||||||||.|||||..|..||
RBAM_024830__ 296 CGAAACGCGTAAAAAAAGGAACGGTCCTGACATTTGGCGACGGCCGGCTG 345
BSNT_04020___ 346 AAGGCAATCTGCACGGAAGAGCTTGAGCACGGCGGCAGAAAGATGGAATT 395
|..||..||||||||||.||||||||.|||||.||||||||.||.|||||
RBAM_024830__ 346 ACAGCGGTCTGCACGGAGGAGCTTGATCACGGAGGCAGAAAAATAGAATT 395
BSNT_04020___ 396 TCAATATGACGGTATTTTCTACGAGGTGCTTGAATCCCTTGGAGAGATGC 445
.|..||||||||.|||||.|||||.|||||||||||.||.||.||.||||
RBAM_024830__ 396 CCGGTATGACGGGATTTTTTACGAAGTGCTTGAATCACTCGGTGAAATGC 445
BSNT_04020___ 446 CGCTCCCTCCATATATCAAAGAACAGCTTGATGACAAAGAGCGCTACCAG 495
|.||.||.||.|||||.|||||.|||||||||||.|||||.||.||.|||
RBAM_024830__ 446 CTCTGCCCCCTTATATTAAAGAGCAGCTTGATGATAAAGAACGGTATCAG 495
BSNT_04020___ 496 ACAGTGTATTCAAAAGAAATCGGCTCTGCTGCTGCGCCTACAGCTGGCCT 545
||.||.|.|||||||||||||||.|||||.||.||.||.||.||.||.||
RBAM_024830__ 496 ACCGTCTTTTCAAAAGAAATCGGATCTGCGGCAGCTCCGACGGCCGGACT 545
BSNT_04020___ 546 TCACTTCACGGAAGAAATCTTACAGCAGCTGAAAGACAAAGGCGTGCAAA 595
|||.||.||||||||.||..|..|..|||||||..|.||.||.||||..|
RBAM_024830__ 546 TCATTTTACGGAAGAGATTCTGGACGAGCTGAAGCAAAAGGGTGTGCGGA 595
BSNT_04020___ 596 TTGAGTTCATCACACTGCACGTAGGCCTTGGAACGTTTCGCCCTGTGAGT 645
||||.||.||||||||.||.||.||.||.||.||.||.|||||.||.|||
RBAM_024830__ 596 TTGAATTTATCACACTTCATGTGGGACTCGGCACATTCCGCCCGGTCAGT 645
BSNT_04020___ 646 GCCGATGAAGTGGAAGAGCATAATATGCATGCAGAGTTTTATCAAATGTC 695
||.|||||.||||||||||||||.|||||.||.||.||||||.|||||.|
RBAM_024830__ 646 GCGGATGATGTGGAAGAGCATAACATGCACGCGGAATTTTATGAAATGAC 695
BSNT_04020___ 696 AGAAGAAACGGCTGCAGCCTTAAACAAAGTAAGAGAAAATGGC----GGT 741
.||||||||.||.||..|.||||||.|.||.|| ||.||| ||.
RBAM_024830__ 696 GGAAGAAACCGCCGCCTCTTTAAACGAGGTCAG----AAAGGCGGGAGGG 741
BSNT_04020___ 742 CGGATCATTTCTGTCGGCACGACCTCGACACGCACGCTTGAGACGATTGC 791
||.||..|.||.|||||.|||||.||.||.|||||.||.||.||.|||||
RBAM_024830__ 742 CGCATTGTGTCGGTCGGGACGACATCCACGCGCACCCTGGAAACCATTGC 791
BSNT_04020___ 792 CGGGGAACATGACGGGCAATTTAAAGCATCAAGCGGCTGGACATCTATTT 841
|||.||.||||||||..||||||.|||.||||||||||||||.||.||.|
RBAM_024830__ 792 CGGCGAGCATGACGGCGAATTTACAGCTTCAAGCGGCTGGACGTCCATCT 841
BSNT_04020___ 842 TTATTTATCCGGGCTATGAATTTAAAGCCATTGACGGAATGATTACAAAC 891
|.|||||||||||.|||||||||||.||.||||||||.|||||.||.||.
RBAM_024830__ 842 TCATTTATCCGGGATATGAATTTAAGGCGATTGACGGCATGATCACCAAT 891
BSNT_04020___ 892 TTCCATTTGCCGAAATCGTCATTGATTATGCTGGTCAGCGCGCTTGCTGG 941
||.|||.||||||||||.||..|.||.|||||.||....||||||||.||
RBAM_024830__ 892 TTTCATCTGCCGAAATCTTCCCTTATCATGCTCGTTTCTGCGCTTGCCGG 941
BSNT_04020___ 942 AAGAGAAAACATTCTGCGTGCCTATAACCATGCAGTGGAAGAGGAATACC 991
.|||||..|..||||....|||||....|||||.||.|||||||||||.|
RBAM_024830__ 942 CAGAGAGCATGTTCTTTCCGCCTACCGTCATGCGGTAGAAGAGGAATATC 991
BSNT_04020___ 992 GTTTCTTCAGCTTCGGAGACGCGATGCTGATTATATAA 1029
|||||||||||||.||.|||||.|||||||||||.|||
RBAM_024830__ 992 GTTTCTTCAGCTTTGGCGACGCCATGCTGATTATCTAA 1029
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