Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04041 and RBAM_024880

See Amino acid alignment / Visit BSNT_04041 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_04041.1.9828.seq
#    -bsequence dna-align/RBAM_024880___coxA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04041-RBAM_024880___coxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04041-RBAM_024880___coxA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04041
# 2: RBAM_024880___coxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 657
# Identity:     347/657 (52.8%)
# Similarity:   347/657 (52.8%)
# Gaps:         201/657 (30.6%)
# Score: 886.0
# 
#
#=======================================

BSNT_04041         1 TTGGGTAAAAAAATGACGATCGCTAGCCTGATTCTAATGACAGCCGGCTT     50
                                                                       
RBAM_024880__      0 --------------------------------------------------      0

BSNT_04041        51 AACAGCTTGCGGAGCAAACGATAATGCTATGAATGA--TACGC-GCAATA     97
                                                 ||||||||  .|||| .||||.
RBAM_024880__      1 ----------------------------ATGAATGACGGACGCTACAATC     22

BSNT_04041        98 ACGACAATACCCGTCCAATCGGATATTATTCAAATGAAAATG---ACGCC    144
                     | |.||  ||.|||||..|||||||||||||.|||||.||||   |||.|
RBAM_024880__     23 A-GTCA--ACACGTCCGGTCGGATATTATTCGAATGATAATGGTAACGGC     69

BSNT_04041       145 GATAGA---CAGGGAGACGGAATCGACCACGATGGTCCTGTTTCTGAATT    191
                        |||   |||   .|||||||.|||||..|.||.||.|||||||||.|
RBAM_024880__     70 ---AGAGGCCAG---TACGGAATGGACCATCAAGGACCCGTTTCTGAAAT    113

BSNT_04041       192 AATGGAGGATCAGAACGACGGTAACCGAAACACCACGAATGTAAATAACC    241
                     .|||||..|.|..||||.|.||   |..||.||.||.|||||        
RBAM_024880__    114 GATGGAAAACCGAAACGGCCGT---CATAATACGACAAATGT--------    152

BSNT_04041       242 GT--GACC-GTGTTACTGC------TGACGATCGTGTTCCTTTGGCAACT    282
                     ||  |||| |   ||| ||      |||||   |.|||||.||..|.||.
RBAM_024880__    153 GTCCGACCAG---TAC-GCGCCTAATGACG---GGGTTCCGTTAACGACG    195

BSNT_04041       283 GACGGAACATATAACAACACGAATAACCGAAACATGAAT-------CGGA    325
                     |||||.|||||||||         ..||||||..|.|||       ||  
RBAM_024880__    196 GACGGCACATATAAC---------GGCCGAAATGTCAATACGCCGCCG--    234

BSNT_04041       326 ATGCAGCGA------ACAACGGGTATGACAACCAAGAAAACAGAAGACTG    369
                       |||||.|      |.||.||||||||||||...|||||||..||..||
RBAM_024880__    235 --GCAGCAATGTCTTATAATGGGTATGACAACGCCGAAAACATCAGGTTG    282

BSNT_04041       370 GCTGCAAAAATTGCCAACCGTGTGAAACAAGTGAAAAACGTCAATGACAC    419
                     ||.||||||.||||.|||||.||||||.||||.|||..|||..|.||.|.
RBAM_024880__    283 GCGGCAAAAGTTGCAAACCGCGTGAAAAAAGTAAAAGGCGTACAGGATAG    332

BSNT_04041       420 ACAAGTTATGGTATCGGA-TGAC---CGAGTAGTTATCGCAGTCAAAAGC    465
                     .||.||.||.||    || ||||   .||||.||.||.||.||||.|   
RBAM_024880__    333 TCAGGTCATCGT----GACTGACACGAGAGTCGTCATTGCCGTCAGA---    375

BSNT_04041       466 CACAGAGAGTTC--------ACAAAGTCTGACAGAGATA---ATGTCGTA    504
                      |||.|    ||        ||.||...|||   .||||   |||||   
RBAM_024880__    376 -ACAAA----TCATCCTTTTACGAAAAATGA---TGATAAACATGTC---    414

BSNT_04041       505 AAAGCA-GCGCGC----AACTATGCAAATGGCCGTGAC-GTCCAGGTATC    548
                      ||.|| ||| ||    ||.|..||..|.|||||| || .|.||.||.|.
RBAM_024880__    415 -AAACATGCG-GCCAAAAAGTTCGCGGACGGCCGT-ACAATTCAAGTGTT    461

BSNT_04041       549 AACAGATAAAGGGCT--GTTCAGAAAACTTCATAAAATG------AACAA    590
                     .||.||.||  .|||  .||.|.|||.||.||..|.|||      ||||.
RBAM_024880__    462 TACCGACAA--CGCTACTTTTACAAAGCTGCAAGACATGAACAGAAACAG    509

BSNT_04041       591 CCGCTAG    597
                     |||.||.
RBAM_024880__    510 CCGTTAA    516


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