Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04045 and RBAM_024900

See Amino acid alignment / Visit BSNT_04045 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_04045___nadA.1.9828.seq
#    -bsequence dna-align/RBAM_024900___nadA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04045___nadA-RBAM_024900___nadA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04045___nadA-RBAM_024900___nadA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04045___nadA
# 2: RBAM_024900___nadA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1140
# Identity:     827/1140 (72.5%)
# Similarity:   827/1140 (72.5%)
# Gaps:          69/1140 ( 6.1%)
# Score: 2877.5
# 
#
#=======================================

BSNT_04045___      1 ATGTCAATTCTTGATGTGATCA----AACAATCGAATGATATGATGCCCG     46
                     |||||.|||.||||.|||.|.|    |.||..||||    ||||||||  
RBAM_024900__      1 ATGTCTATTTTTGACGTGCTAACTGCATCAGCCGAA----ATGATGCC--     44

BSNT_04045___     47 AAAG---TTATAAAGA-------ACTATCGAGAAAGGATATGGAAACGCG     86
                      .||   |||||||||       ||  |.|||||     |||||||.|||
RBAM_024900__     45 -GAGCCATTATAAAGACATGAGCAC--TGGAGAA-----ATGGAAAAGCG     86

BSNT_04045___     87 CGTTGCCGCCATTAAAAAAAAG----TTCGG-CAGCAGGCTCTTTATACC    131
                     .||.|||||||||    |||.|    ||||| .||| |.||.||.||.||
RBAM_024900__     87 GGTCGCCGCCATT----AAACGGGCTTTCGGAAAGC-GCCTGTTCATTCC    131

BSNT_04045___    132 AGGCCATCATTATCAAAAGGATGAAGTGATACAATTTGCTGACCAAACAG    181
                     .||.|||||.||||||||.||.|||||.||||||||.||.||.....|||
RBAM_024900__    132 GGGGCATCACTATCAAAAAGACGAAGTAATACAATTCGCCGATACGGCAG    181

BSNT_04045___    182 GCGACTCCCTGCAATTGGCCCAAGTAGCGGAAAAAAACAAAGAAGCGGAT    231
                     |.|||||||||||..|.||.|||||.||.||||||||.|||||.|||||.
RBAM_024900__    182 GTGACTCCCTGCAGCTTGCTCAAGTGGCAGAAAAAAATAAAGAGGCGGAA    231

BSNT_04045___    232 TATATCGTATTTTGCGGCGTTCACTTTATGGCAGAAACCGCCGATATGCT    281
                     |||||.||.|||||||||||.||.||||||||.||||||||.||||||||
RBAM_024900__    232 TATATTGTGTTTTGCGGCGTGCATTTTATGGCGGAAACCGCTGATATGCT    281

BSNT_04045___    282 GAC--AAGCGAGCGGCAAACGGTCGTCCTGCCAGATATGAGAGCAGGATG    329
                     |||  |.|..|.|  |||||.|||.|..||||.||.|||.|.||.|||||
RBAM_024900__    282 GACTGATGATAAC--CAAACCGTCATTTTGCCCGACATGCGCGCCGGATG    329

BSNT_04045___    330 TTCTATGGCTGACATGGCTGACATGCAGCAGACCAATAGGGCATGG-AAG    378
                     .||.||||||||.|||||.||.||.||||||||..|.|..|||||| |||
RBAM_024900__    330 CTCGATGGCTGATATGGCAGATATTCAGCAGACGGACAAAGCATGGCAAG    379

BSNT_04045___    379 AAGCTTCAGCATATATTTGGAGATACGATCATACCTTTAACTTATGTGAA    428
                      |||||||..|..|.|..||..|.||.|||||.||.|||||.|||||.||
RBAM_024900__    380 -AGCTTCAAGAACTGTACGGTAACACCATCATTCCGTTAACATATGTTAA    428

BSNT_04045___    429 CTCCACTGCGGAGATCAAGGCATTCGTCGGAAAACATGGCGGAGCAACTG    478
                     |||.||.|||||.||.||.||||||||||||...||.||.|||||.||.|
RBAM_024900__    429 CTCGACGGCGGAAATTAAAGCATTCGTCGGACGGCACGGGGGAGCGACCG    478

BSNT_04045___    479 TGACTTCTTCAAATGCGAAAAAAGTGCTTGAATGGGCGTTTACACAGAAA    528
                     |.||.|||||.|||||....|..|||||..|||||||.||||.|||.|||
RBAM_024900__    479 TCACCTCTTCGAATGCCCGGAGTGTGCTGAAATGGGCTTTTAAACAAAAA    528

BSNT_04045___    529 AAAAGAATTTTATTTTTGCCTGATCAGCATTTAGGGAGAAATACGGCTTA    578
                     .|.|||||||||||||||||.||||||||||||||.|||||||||||.||
RBAM_024900__    529 GAGAGAATTTTATTTTTGCCGGATCAGCATTTAGGCAGAAATACGGCCTA    578

BSNT_04045___    579 TGATCTGGGCATTGCGCTCGA-AGATATGGCTGTGTGGGACCCG----AT    623
                     |||.||.||||||.|||| || |||.||||||||.|||||||||    |.
RBAM_024900__    579 TGACCTCGGCATTCCGCT-GACAGAAATGGCTGTATGGGACCCGGTGCAG    627

BSNT_04045___    624 AAAAGATGAATTAGTAGCTGA--ATCCGGGCATACGAATGTGAAAGTGAT    671
                     ||..|||...|||    ||||  ||||||     ..||..|.||.||.||
RBAM_024900__    628 AACCGATTGCTTA----CTGACCATCCGG-----AAAACATTAAGGTTAT    668

BSNT_04045___    672 TTTGTGGAAAGGGCATTGCTCTGTTCACGAGAAATTCACCACTAAAAATA    721
                     ..|.|||||||||||||||||.||.|||||.||.||.||..|..||||||
RBAM_024900__    669 CCTTTGGAAAGGGCATTGCTCCGTACACGAAAAGTTTACAGCGGAAAATA    718

BSNT_04045___    722 TCCTTGATATGAGAGAGCGAGACCCCGACATTCAGATCATTGTGCACCCG    771
                     |...|.|..||.|..||||.||..|||.|||.|..||.||.||.||.|||
RBAM_024900__    719 TTTCTCAGCTGCGGCAGCGGGATTCCGGCATCCGCATTATCGTTCATCCG    768

BSNT_04045___    772 GAATGTTCACACGAAGTCGTGACACTAAGCGATGATAACGGATCAACGAA    821
                     ||||||||.|..|||||.||..|.||.||.||.||.|.|||.||.||.||
RBAM_024900__    769 GAATGTTCGCGGGAAGTGGTCTCGCTCAGTGACGACAGCGGGTCTACCAA    818

BSNT_04045___    822 ATATATTATCGACACAATCAACCAGGCTCCGGCGGGAAGCAAGTGGGCAA    871
                     |||.|||||.||.||.|||.|.||||||....||||||||||||||||.|
RBAM_024900__    819 ATACATTATTGATACGATCGAACAGGCTGAACCGGGAAGCAAGTGGGCGA    868

BSNT_04045___    872 TCGGGACAGAAATGAATCTTGTTCAGCGGATCATTCACGAGCATCCAGAT    921
                     ||||.||.||||||||||||||.|||||..||||||||..||||||.|||
RBAM_024900__    869 TCGGCACGGAAATGAATCTTGTCCAGCGCCTCATTCACTCGCATCCGGAT    918

BSNT_04045___    922 AAACAAATCGAATCACTCAACCCTGACATGTGCCCTTGCCTGACAATGAA    971
                     |||||.||.||||||.|.||.||.||.|||||.||.||.|||||||||||
RBAM_024900__    919 AAACAGATTGAATCATTGAATCCCGATATGTGTCCGTGTCTGACAATGAA    968

BSNT_04045___    972 CCGAATTGATTTGCCGCATTTGTTGTGGTCGCTGGAACAAATTGAAAAAG   1021
                     |.||||.||..||||||||||.|||||||||||.||.||..|||||||||
RBAM_024900__    969 CAGAATCGACCTGCCGCATTTATTGTGGTCGCTTGAGCAGCTTGAAAAAG   1018

BSNT_04045___   1022 GAGAACCTTCAGGCGTCATCAAGGTGCCAAAAGCCATTCAGGA-AGATGC   1070
                     |.||.||....||.|||||.||.||.||..||||..||| ||| |||.||
RBAM_024900__   1019 GCGAGCCGAAGGGTGTCATTAAAGTTCCGGAAGCGGTTC-GGACAGAAGC   1067

BSNT_04045___   1071 ACTCCTTGCCCTGAATCGAATGCTTTCGA-TC--ACGTAG   1107
                     .||.|.|||..||||..|||||||   || ||  |||||.
RBAM_024900__   1068 GCTTCGTGCTTTGAACAGAATGCT---GAGTCATACGTAA   1104


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