Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04051 and RBAM_024940

See Amino acid alignment / Visit BSNT_04051 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_04051___yrxA.1.9828.seq
#    -bsequence dna-align/RBAM_024940___yrxA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04051___yrxA-RBAM_024940___yrxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04051___yrxA-RBAM_024940___yrxA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04051___yrxA
# 2: RBAM_024940___yrxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 550
# Identity:     406/550 (73.8%)
# Similarity:   406/550 (73.8%)
# Gaps:          14/550 ( 2.5%)
# Score: 1408.0
# 
#
#=======================================

BSNT_04051___      1 TTGACCGAAGAATTAAAGC-TAATGGGCGCCAACAGGCGTGACCAGCTTC     49
                     |||||.||||.|...|||| ||.|||| |..||.||.||.|||..|||.|
RBAM_024940__      1 TTGACAGAAGGAACGAAGCTTACTGGG-GAGAAAAGACGCGACATGCTGC     49

BSNT_04051___     50 TTCTGTGGCTGAAGGAATCTAAATCACCGCTGACAGGAGGAGAACTCGCA     99
                     |||..||||||||.|||.|....||.||..|.||||||||.|||.|.||.
RBAM_024940__     50 TTCATTGGCTGAAAGAAGCCGGCTCGCCATTAACAGGAGGCGAATTGGCC     99

BSNT_04051___    100 AAAAAAGCGAACGTCTCAAGACAGGTTATTGTACAGGATATATCGCTCTT    149
                     ||||||||.||.||||||||||||||.||.||.|||||.||||||||.||
RBAM_024940__    100 AAAAAAGCAAATGTCTCAAGACAGGTGATCGTGCAGGACATATCGCTTTT    149

BSNT_04051___    150 GAAAGCGAAAAATGTACCGATTATCGCCACAAGCCAAGGATATGTATACA    199
                     ||||||.|||||.|..|||||||||||.||.||||||||.||..||||||
RBAM_024940__    150 GAAAGCAAAAAACGAGCCGATTATCGCGACGAGCCAAGGCTACTTATACA    199

BSNT_04051___    200 T--GGATGCA-GCCGCTCAGCAGC-ACCAGCAGGCAGAAAGAATCATAGC    245
                     |  |.|||.| ||||    ||.|| |..|..|.||.|||.|.||..|.||
RBAM_024940__    200 TCAGCATGAATGCCG----GCGGCGAAAAAAATGCCGAACGGATTGTCGC    245

BSNT_04051___    246 ATGTCTGCACGGTCCTGAACGGACAGAAGAGGAAC-TGCAGCTCATCGTC    294
                     .|||||||||||.||.||.|||||.|||||.||.| |||| |||||.|||
RBAM_024940__    246 CTGTCTGCACGGACCGGAGCGGACGGAAGAAGAGCTTGCA-CTCATTGTC    294

BSNT_04051___    295 GACGAAGGCGTTACAGTAAAAGACGTAAAAATCGAGCATCCCGTATACGG    344
                     ||.||||||||.||..||||.|||||.|.|||.||.||.|||||||||||
RBAM_024940__    295 GATGAAGGCGTCACCATAAAGGACGTCATAATTGAACACCCCGTATACGG    344

BSNT_04051___    345 AGATTTAACTGCAGCCATCCAAGTAGGCACCCGGAAAGAAGTTAGCCATT    394
                     .||||||||.||.|||||...|||..|.||.|||||||||||.|..||.|
RBAM_024940__    345 CGATTTAACCGCCGCCATAAGAGTCAGTACACGGAAAGAAGTCAAACAAT    394

BSNT_04051___    395 TCATCAAAAAAATCAATTCTACGAATGCTGCCTACTTATCACAGCTGACC    444
                     ||||..|..|.||.||.||.||.|||||.||.|||.|.||||||||||||
RBAM_024940__    395 TCATGGATCACATTAACTCGACAAATGCCGCTTACCTTTCACAGCTGACC    444

BSNT_04051___    445 GACGGCGTGCACCTGCATACACTGACAGCACCTGA-TGAACATCGCATCG    493
                     |..|||||||||||.|||||..|.|..|| ||.|| ..||.|.||.||.|
RBAM_024940__    445 GGAGGCGTGCACCTCCATACGTTAAGCGC-CCCGACAAAAGAGCGGATTG    493

BSNT_04051___    494 ATCAAGCTTGCCAAGCCCTCGAAGAAGCCGGCATTTTAATTAAAGACTAA    543
                     |.|||||.||||||||.||.||.||.||.||.||||||||.|||||.|||
RBAM_024940__    494 ACCAAGCCTGCCAAGCGCTGGACGACGCGGGTATTTTAATAAAAGATTAA    543


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