Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04071 and RBAM_025100

See Amino acid alignment / Visit BSNT_04071 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:25
# Commandline: needle
#    -asequence dna-align/BSNT_04071___maf.1.9828.seq
#    -bsequence dna-align/RBAM_025100___maf.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04071___maf-RBAM_025100___maf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04071___maf-RBAM_025100___maf.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04071___maf
# 2: RBAM_025100___maf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity:     454/602 (75.4%)
# Similarity:   454/602 (75.4%)
# Gaps:          64/602 (10.6%)
# Score: 1750.0
# 
#
#=======================================

BSNT_04071___      1 ATGACAAAACCGTTAATACTTGCATCACAATCTCCGCGCAGGAAAGAACT     50
                     ||||||||||..||||||||.|||||||||||||||||.||.||||||||
RBAM_025100__      1 ATGACAAAACGCTTAATACTCGCATCACAATCTCCGCGAAGAAAAGAACT     50

BSNT_04071___     51 CCTCGATCTTCTCCAGCTGCCCTACTCCATTATTGTCAGTGAAG-----T     95
                     |||..|||||||.|||.|.||.|||..||||||||     .|||     .
RBAM_025100__     51 CCTTAATCTTCTTCAGATTCCTTACAGCATTATTG-----CAAGCCGCAC     95

BSNT_04071___     96 AGAAGAAAAATTAAATCGAAACTTTTCACCAGAAGAAAACGTCCAATGGT    145
                     ||||||||||||||||||||||.||||.||.|||||||||||||||||.|
RBAM_025100__     96 AGAAGAAAAATTAAATCGAAACCTTTCGCCGGAAGAAAACGTCCAATGTT    145

BSNT_04071___    146 TGGCAAAACAAAAAGCTAAGGCTGTA---GCTGATCTCCA---CCCGCAT    189
                     ||||..|.||||||||....||||||   ||.||     |   |||| ||
RBAM_025100__    146 TGGCCGAGCAAAAAGCCGGTGCTGTATTGGCCGA-----AAATCCCG-AT    189

BSNT_04071___    190 GCAATCGTTATCGGTGCTGATACAATGGTATGCCTTGACGGCGAATGCCT    239
                     |||.||||||||||.|||||.||.|||||.|||.|.||||||||||||||
RBAM_025100__    190 GCAGTCGTTATCGGGGCTGACACGATGGTGTGCATAGACGGCGAATGCCT    239

BSNT_04071___    240 TGGCAAACCGCAGGATCA-AGAAGAAGCTGCTTCTATGCTGCGGAGGCTT    288
                     .|||||||||||.|| || |||||||||.||....|||||||||||||||
RBAM_025100__    240 CGGCAAACCGCATGA-CAGAGAAGAAGCGGCACACATGCTGCGGAGGCTT    288

BSNT_04071___    289 TCAGGCCGAAGTCACTC-AGTAATAACCGCGGTCAGCATTCA--------    329
                     ||.||||||||.|| || |||.||.||.||||||||||||||        
RBAM_025100__    289 TCCGGCCGAAGCCA-TCAAGTCATTACGGCGGTCAGCATTCAGACGCATG    337

BSNT_04071___    330 AGCTGAAAATCACAGCGAGACTTTTTATGATAAGACAGAAGTTGTGTTTT    379
                     |.|.||||        ||.||.||.|.|||.|.|||.|||||...|||||
RBAM_025100__    338 ACCGGAAA--------GAAACGTTCTGTGACACGACGGAAGTGACGTTTT    379

BSNT_04071___    380 GGTCCCTCAGTGAAGAAGAGATTTGGAC----GTATATTGAAACAAAAGA    425
                     ||.|.|||||||||||.||.||    ||    .||.||||||||||||||
RBAM_025100__    380 GGCCGCTCAGTGAAGACGACAT----ACAGCTCTACATTGAAACAAAAGA    425

BSNT_04071___    426 GCCGATGGATAAAGCAGGTGCATACGGCATCCAAGGAAGAGGCGCGCTTT    475
                     .|||||||||||||||||||||||||||||||||||||.|||||||||||
RBAM_025100__    426 ACCGATGGATAAAGCAGGTGCATACGGCATCCAAGGAAAAGGCGCGCTTT    475

BSNT_04071___    476 TTGTAAAGAAAATAGACGGAGATTATTATTCAGTCATGGGCCTTCCTATA    525
                     |.||.||.|||||||||||.||||.||||||.|||.|.||.||||||.|.
RBAM_025100__    476 TAGTGAAAAAAATAGACGGTGATTTTTATTCTGTCGTCGGGCTTCCTGTC    525

BSNT_04071___    526 TCAAAAACAATGAGAGTTCTTCGCC-------ACTTTGATATAAGGGCAT    568
                     .|.||||||||||||       |||       |.|||.||||||..||.|
RBAM_025100__    526 GCTAAAACAATGAGA-------GCCTTGAAAGAATTTAATATAAAAGCTT    568

BSNT_04071___    569 GA    570
                     ||
RBAM_025100__    569 GA    570


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