Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04095 and RBAM_025240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_04095.1.9828.seq
# -bsequence dna-align/RBAM_025240___ysxD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04095-RBAM_025240___ysxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04095-RBAM_025240___ysxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04095
# 2: RBAM_025240___ysxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 515
# Identity: 371/515 (72.0%)
# Similarity: 371/515 (72.0%)
# Gaps: 40/515 ( 7.8%)
# Score: 1305.0
#
#
#=======================================
BSNT_04095 1 ATGAAACAAAAATCAATTTTATTCCCTTGTCTGCTGCTTGCCGCTTCTGT 50
||||||.|||.||||||||||||.||..|.||.||||||||||||||..|
RBAM_025240__ 1 ATGAAAAAAACATCAATTTTATTACCGGGACTTCTGCTTGCCGCTTCATT 50
BSNT_04095 51 ATATGCATGGCTAGAAAGCGGCCAAGCCGAACTGTTT-----TCAGGGCA 95
||..||||||||..|.|||||.||.|...|.|||||| ||||||
RBAM_025240__ 51 ATTCGCATGGCTTCAGAGCGGACAGGTTCACCTGTTTGAGAATCAGGG-- 98
BSNT_04095 96 GGATCAATGGCCTGTTCTCCTCATGCTGTTAGGCGC--AGCCTTTGTATA 143
|| |||||||.||.|||||.|||||.||.||||| .||..||| ||
RBAM_025240__ 99 GG---AATGGCCGGTGCTCCTTATGCTTTTGGGCGCTGTGCTCTTG--TA 143
BSNT_04095 144 TCAAGGAAAAAAAGAAGCCGTTACACCCCATTTCTTCATCGGTTTGCTTC 193
|||.||.|||||.|||||.|.....||.||..||.|.|||||..||||||
RBAM_025240__ 144 TCAGGGCAAAAAGGAAGCGGCCGGGCCTCACGTCCTGATCGGCATGCTTC 193
BSNT_04095 194 TCTTCGGGATCGGCTTACACTTTTTTGCCAAGCCGAAATGGG----TATG 239
|.||.||.||.||.|||||||||||.|||||.|| ||.| .|||
RBAM_025240__ 194 TTTTTGGCATAGGTTTACACTTTTTCGCCAAACC----TGAGCTCTCATG 239
BSNT_04095 240 GTGGCCGGATGATTTTGAAATGCTCCTCTTTATGATCGGCTTCTCACTTC 289
||||||||..||||||||||||.|.|||||..|..||||.||||| |
RBAM_025240__ 240 GTGGCCGGGAGATTTTGAAATGATTCTCTTCGTCTTCGGATTCTC----C 285
BSNT_04095 290 TCGTTT----CAGCCGTTCAAAAAAAAGAATATGTATATGAAGCTGTGTC 335
|..||| ||||| |.|||||||||||||||.|||||.||..|
RBAM_025240__ 286 TTATTTGCGGCAGCC------AGAAAAGAATATGTATACGAAGCGGTTGC 329
BSNT_04095 336 GATGATTTGTTTTTCCCTGTTTTTGTACTTTTTCAAACAAATTATGGCAT 385
.||||||.||||||||||.|||||.|||||.||.||||||||||.|||.|
RBAM_025240__ 330 CATGATTGGTTTTTCCCTCTTTTTATACTTCTTTAAACAAATTACGGCGT 379
BSNT_04095 386 GGCTTGAGTCTGCGCATATTCCAAC--AGCGCTTCTGAAGGAGTATTGGC 433
||||.|||||.|..||||||||.|| |.|.|||| ||....||.||||
RBAM_025240__ 380 GGCTGGAGTCCGTCCATATTCCGACGGAACACTTC--AAAACATACTGGC 427
BSNT_04095 434 CGTTTGTCTTTATTGGAATCAGTTTATTGTTATTATTGATAAAACGAAAA 483
|||.|||.||.||.||||||||..|.||.|||||.||.||.||.||.||.
RBAM_025240__ 428 CGTATGTTTTCATCGGAATCAGCCTTTTATTATTGTTTATCAAGCGGAAC 477
BSNT_04095 484 AAATCTATACGATAA 498
|||.|||||||||||
RBAM_025240__ 478 AAAACTATACGATAA 492
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