Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04099 and RBAM_025270

See Amino acid alignment / Visit BSNT_04099 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_04099___lonB.1.9828.seq
#    -bsequence dna-align/RBAM_025270___lonB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04099___lonB-RBAM_025270___lonB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04099___lonB-RBAM_025270___lonB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04099___lonB
# 2: RBAM_025270___lonB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1667
# Identity:    1344/1667 (80.6%)
# Similarity:  1344/1667 (80.6%)
# Gaps:          16/1667 ( 1.0%)
# Score: 5408.0
# 
#
#=======================================

BSNT_04099___      1 ATGAGTTGGACAGGGATCGCGTTATTTATTCAGCTGTTTTTTGGGATCAT     50
                     ||||||||||||||||||||.||||||.|.|||||||||||.|||||..|
RBAM_025270__      1 ATGAGTTGGACAGGGATCGCATTATTTGTACAGCTGTTTTTCGGGATAGT     50

BSNT_04099___     51 CATCGGTTTGTATTTTTGGAATTTGCTTAAAAATCAAAGGACACAAAAGG    100
                     ||||||.||.||||||||||||.||||.|||||.||..|.||||||||.|
RBAM_025270__     51 CATCGGATTATATTTTTGGAATCTGCTCAAAAACCAGCGTACACAAAAAG    100

BSNT_04099___    101 TCACGATAGATAAAGAATCAAAGAAGGAAATGGAGCAGCTTCGGAAAATG    150
                     |.||||||||||||||||||||.||.||||||||.|||||.||.||||||
RBAM_025270__    101 TGACGATAGATAAAGAATCAAAAAAAGAAATGGAACAGCTGCGCAAAATG    150

BSNT_04099___    151 CGTGCTATCAGCTTGTCCGAGCCATTATCTGAGAAGGTCCGCCCCAAAAG    200
                     ||.||.|||||.||.||.||.||.|||||.||.|||||.||.||.|||||
RBAM_025270__    151 CGCGCCATCAGTTTATCAGAACCTTTATCAGAAAAGGTGCGGCCGAAAAG    200

BSNT_04099___    201 CTTTAAAGATATCGTCGGACAGGAAGACGGCATTAAAGCATTAAAGGCGG    250
                     ||||.|.||.||.|||||.|||||||||||.||||||||.|||||.||.|
RBAM_025270__    201 CTTTCAGGACATTGTCGGCCAGGAAGACGGAATTAAAGCGTTAAAAGCAG    250

BSNT_04099___    251 CTTTATGCGGGCCAAATCCTCAGCATGTGATTGTCTATGGGCCACCGGGA    300
                     |..|.|||||.||.||.||.|||||.||.|||.|.||.||.||.||||||
RBAM_025270__    251 CGCTTTGCGGACCGAACCCGCAGCACGTCATTATTTACGGTCCTCCGGGA    300

BSNT_04099___    301 GTTGGGAAAACGGCTGCTGCGCGGCTTGTGTTGGAAGAAGCAAAAAAACA    350
                     ||.||.|||||||||||.||||||||.||.|||||||||||.||||||||
RBAM_025270__    301 GTCGGTAAAACGGCTGCGGCGCGGCTGGTATTGGAAGAAGCGAAAAAACA    350

BSNT_04099___    351 TAAACAATCACCGTTTAAAGAGCAGGCTGTCTTTGTGGAACTCGATGCGA    400
                     ||||||.|||||||||.||.||||||||||.|||||.|||||.|||||||
RBAM_025270__    351 TAAACAGTCACCGTTTCAAAAGCAGGCTGTTTTTGTTGAACTTGATGCGA    400

BSNT_04099___    401 CAACAGCCCGTTTTGATGAAAGAGGAATTGCCGATCCGCTCATCGGCTCT    450
                     |.||.||.||.|||||||||.|.||.||||||||||||||.|||||.||.
RBAM_025270__    401 CGACCGCGCGGTTTGATGAACGGGGGATTGCCGATCCGCTTATCGGTTCA    450

BSNT_04099___    451 GTCCATGACCCGATATATCAAGGGGCCGGAGCGATGGGACAGGCTGGGAT    500
                     ||.|||||.|||||.|||||.||.||.||.||||||||.||.||.||.||
RBAM_025270__    451 GTGCATGATCCGATTTATCAGGGAGCGGGTGCGATGGGCCAAGCAGGCAT    500

BSNT_04099___    501 TCCGCAGCCGAAGCAGGGAGCTGTCACCCATGCCCATGGCGGTGTGCTGT    550
                     ||||||||||||.|||||.|||||.||||||||.||.|||||.||..|||
RBAM_025270__    501 TCCGCAGCCGAAACAGGGGGCTGTGACCCATGCTCACGGCGGGGTATTGT    550

BSNT_04099___    551 TTATTGATGAAATAGGGGAGCTGCATCCTATTCAAATGAATAAAATGCTG    600
                     |||||||||||||.||.|||||.|||||.|||||.|||||||||||||||
RBAM_025270__    551 TTATTGATGAAATCGGCGAGCTTCATCCGATTCAGATGAATAAAATGCTG    600

BSNT_04099___    601 AAGGTGCTTGAGGACAGAAAAGTCTTTTTAGACAGTGCGTATTACAGTGA    650
                     |||||||||||.||..|||||||.||||||||||||||||||||||||||
RBAM_025270__    601 AAGGTGCTTGAAGATCGAAAAGTATTTTTAGACAGTGCGTATTACAGTGA    650

BSNT_04099___    651 GGAAAATACACAAATTCCGAATCATATTCATGATATTTTTCAAAATGGGC    700
                     .||||||||.|||||.||||||||.|||||||||||||||||||||||||
RBAM_025270__    651 AGAAAATACGCAAATACCGAATCACATTCATGATATTTTTCAAAATGGGC    700

BSNT_04099___    701 TGCCGGCTGATTTTCGCTTGATTGGCGCGACCACGAGAATGCCAAACGAA    750
                     |.|||||.|||||.||.|||||.||.|||||.|||||||||||.||.|||
RBAM_025270__    701 TTCCGGCAGATTTCCGTTTGATCGGAGCGACAACGAGAATGCCGAATGAA    750

BSNT_04099___    751 ATTCCGCCAGCTATCAGGTCCCGCTGTCTGGAGGTTTTTTTCCGCGAGCT    800
                     ||||||||.||.|||.|.||.||||||||.||.||.||||||||||||||
RBAM_025270__    751 ATTCCGCCGGCCATCCGTTCGCGCTGTCTTGAAGTATTTTTCCGCGAGCT    800

BSNT_04099___    801 TGAAAAGGACGAGCTGAAAACTGTTGCCAAAACAGCAGCGGATAAAATTG    850
                     .||||||||.||.||.||||..|||||.||||.||||||.||.||||||.
RBAM_025270__    801 GGAAAAGGATGAACTTAAAATCGTTGCGAAAAAAGCAGCCGACAAAATTC    850

BSNT_04099___    851 AAAAAAATATCTCCGAAGAAGGCCT-AGATCTTTTGACCAGCTACACACG    899
                     |.|||.|.||.||.||.||||..|| || |.|..||||||..||.||..|
RBAM_025270__    851 AGAAAGAGATTTCTGACGAAGCTCTCAG-TGTGCTGACCACATATACGAG    899

BSNT_04099___    900 GAACGGGCGGGAAGCCGTCAATATGATTCAAATCGCAGCGGGGATGGCTG    949
                     .|||||.||.|||||||||||||||||.||.|||||.||.||.|||||.|
RBAM_025270__    900 AAACGGACGTGAAGCCGTCAATATGATCCAGATCGCCGCCGGCATGGCGG    949

BSNT_04099___    950 TAACGGAGAATCGGAAGGACATTACGATTGAGGATATTGAATGGGTCATT    999
                     |.||.|||.|..|.||.||.|||||||..||.|||||.||||||||..||
RBAM_025270__    950 TGACTGAGGACAGAAAAGAAATTACGACAGAAGATATAGAATGGGTTGTT    999

BSNT_04099___   1000 CACTCCAGTCAGCTTACTCCAAAGCACGAGCAAAAAATCGGTGTTGAACC   1049
                     ||.||||||||||||||.||.||..|.|||||.|||||||..|.||||||
RBAM_025270__   1000 CATTCCAGTCAGCTTACACCTAAAAATGAGCAGAAAATCGCCGATGAACC   1049

BSNT_04099___   1050 ACAGGTTGGCATTGTAAATGGGCTTGCAGTCTATGGGCCTAACAGCGGAT   1099
                     .||.||.|||||.||.||.||.|||||.|||||.|||||.||||||||  
RBAM_025270__   1050 GCAAGTCGGCATCGTGAACGGACTTGCCGTCTACGGGCCGAACAGCGG--   1097

BSNT_04099___   1100 CGC--TTCTGGAAATCGAAGTGAGTGTAACCGCGGCTCAAGATAAAGGA-   1146
                     |||  |.||||||||||||||||.|||.||..|.||.||.||.|||||| 
RBAM_025270__   1098 CGCATTGCTGGAAATCGAAGTGAATGTCACACCTGCGCAGGACAAAGGAA   1147

BSNT_04099___   1147 ---TCAATTAACATCACAGGAATAGCTGAAGAAGAAAGCATCGGCAGCCA   1193
                        |.|||    |||||.|||||.||.||.||||||||||||||||||||
RBAM_025270__   1148 GCCTGAAT----ATCACGGGAATTGCAGAGGAAGAAAGCATCGGCAGCCA   1193

BSNT_04099___   1194 ATCAAAATCAATCAGACGAAAAAGCATGGCGAAGGGTTCGGTTGAAAATG   1243
                     |||.||.||.|||.|.||.|||||.|||||||||||.||.||.|||||||
RBAM_025270__   1194 ATCGAAGTCGATCCGCCGCAAAAGTATGGCGAAGGGATCTGTAGAAAATG   1243

BSNT_04099___   1244 TATTAACCGTGCTCCGGACAATGGGAATGAAGCCTTCTGATTATGATATT   1293
                     |..|.||.||.||.||.||||||||.||.||.|||||.||.|||||.|||
RBAM_025270__   1244 TTCTGACGGTTCTGCGCACAATGGGCATCAAACCTTCAGACTATGACATT   1293

BSNT_04099___   1294 CACATCAATTTCCCAGGAGGGATTCCGATTGATGGGCCGTCAGCAGGCAT   1343
                     |||.|||||||.||.||.||....||||||||.||.||.||||||||.||
RBAM_025270__   1294 CACGTCAATTTTCCGGGCGGAGGCCCGATTGACGGACCTTCAGCAGGTAT   1343

BSNT_04099___   1344 TGCGATGGCGGCGGGGATTTTCTCGGCGATACACAAAATTCCTATTGACA   1393
                     .||||||||.|||||||||||.||.|||||.|||...||.||.||.|||.
RBAM_025270__   1344 CGCGATGGCCGCGGGGATTTTTTCCGCGATTCACCGCATCCCGATCGACC   1393

BSNT_04099___   1394 ATACCGTTGCGATGACGGGCGAAATCAGCCTGAATGGTCTTGTGAAACCC   1443
                     ||||.||.|||||||||||.|||||||||||||..||.|||||.|||||.
RBAM_025270__   1394 ATACGGTGGCGATGACGGGAGAAATCAGCCTGACGGGGCTTGTCAAACCG   1443

BSNT_04099___   1444 ATTGGAGGCGTCATTCCGAAAATAAAAGCGGCCAAGCAGTCCGGGGCGAA   1493
                     ||.||.|||||||||||||||||.|||||.||.||.|||.||||.||.||
RBAM_025270__   1444 ATCGGCGGCGTCATTCCGAAAATTAAAGCCGCAAAACAGGCCGGAGCAAA   1493

BSNT_04099___   1494 AAAGGTGATTATCCCATATGAAAATCAGCAGGCCA-TCTTAAAGCAGATT   1542
                     ||.|||.||||||||||||||||||||||||.||| |||.||| |..||.
RBAM_025270__   1494 AACGGTCATTATCCCATATGAAAATCAGCAGTCCATTCTGAAA-CGAATA   1542

BSNT_04099___   1543 GACGGGATCGAGATTATTGCAGTGAAGACGTTCCAAGAAGTGCTTGATGA   1592
                     |||||.|||...||||..||.||.||.||||||||.|||||||||||.|.
RBAM_025270__   1543 GACGGAATCACCATTAAAGCGGTAAAAACGTTCCAGGAAGTGCTTGACGT   1592

BSNT_04099___   1593 AATTTTGGTGAATCCGCCAACGGAACAAAAACCGTTTCATATCGAAATCA   1642
                     .||.|||||..||||.||..|.|||||||||||||||.|||||.||||.|
RBAM_025270__   1593 CATATTGGTTGATCCTCCTTCAGAACAAAAACCGTTTGATATCCAAATGA   1642

BSNT_04099___   1643 ATAAAGAATCTGTTTAA   1659
                     ||||||||||.||.|||
RBAM_025270__   1643 ATAAAGAATCCGTATAA   1659


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