Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04108 and RBAM_025330

See Amino acid alignment / Visit BSNT_04108 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:29
# Commandline: needle
#    -asequence dna-align/BSNT_04108___leuB.1.9828.seq
#    -bsequence dna-align/RBAM_025330___leuB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04108___leuB-RBAM_025330___leuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04108___leuB-RBAM_025330___leuB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04108___leuB
# 2: RBAM_025330___leuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1129
# Identity:     854/1129 (75.6%)
# Similarity:   854/1129 (75.6%)
# Gaps:          62/1129 ( 5.5%)
# Score: 3216.0
# 
#
#=======================================

BSNT_04108___      1 TTGAAGAAACGTATTGCTCTATTGCCCGGAGACGGGATCGGCCCTGAAGT     50
                     |||||.|||||.||||||.|..|||||||.|||||.|||||.||.|||||
RBAM_025330__      1 TTGAAAAAACGCATTGCTTTGCTGCCCGGTGACGGAATCGGACCGGAAGT     50

BSNT_04108___     51 ATTAGAATCAGCGACAGACGTACTGAAAAGTGTTGCCGAACGCTTTAACC    100
                     ....|||||||||.||||.|||.|||||||.||||||||||..||....|
RBAM_025330__     51 GGCGGAATCAGCGGCAGATGTATTGAAAAGCGTTGCCGAACAATTCGGAC    100

BSNT_04108___    101 ATGAATTTGAATTTGAATATGGCCTGATTGGAGGGGCGGCTATTGATGAA    150
                     |||||||||||||||||.|.||.|||||.||.||.|||||.|||||.|..
RBAM_025330__    101 ATGAATTTGAATTTGAAAACGGACTGATCGGGGGAGCGGCCATTGACGCC    150

BSNT_04108___    151 CATCATAACCCCCTCCCGGAGGAAACCGTTGCTGCTTGT-AAAAATGCAG    199
                     |||||.||||||||.||.|||||.||.||.|||..|||| |||.|| |.|
RBAM_025330__    151 CATCAAAACCCCCTTCCTGAGGAGACGGTGGCTCTTTGTGAAAGAT-CCG    199

BSNT_04108___    200 ACGCGATATTGCTTGGTGCTGTCGGCGGACCGAAATGGGATCAAAATCCT    249
                     ||||.||..||||.||.||.||||||||||||||||||||.|||||||||
RBAM_025330__    200 ACGCCATCCTGCTCGGGGCAGTCGGCGGACCGAAATGGGACCAAAATCCT    249

BSNT_04108___    250 TCGGAACTGAGACCGGAAAAAGGGCTGCTCAGCATCAGAAAACAGCTTGA    299
                     .||||.||.||||||||||||||.||||||.|||||||||||.|.||.|.
RBAM_025330__    250 CCGGAGCTCAGACCGGAAAAAGGCCTGCTCGGCATCAGAAAAAAACTCGG    299

BSNT_04108___    300 TTTGTTTGCGAATTTACGGCCTGTGAAGGTATTTGAAAGCCTTTCTGATG    349
                     ..|||||||.|||.|.||.||.||||..||||||||||||||.|||||.|
RBAM_025330__    300 CCTGTTTGCCAATCTGCGTCCCGTGACCGTATTTGAAAGCCTGTCTGAGG    349

BSNT_04108___    350 CTTCGCCTTTGAAAAAAGAATATAT-AGATAAT----GTTGATTTCGTTA    394
                     |.||.||..|||||||||||||||| ||         ||.||.||.||.|
RBAM_025330__    350 CGTCTCCGCTGAAAAAAGAATATATCAG-----CGGCGTCGACTTTGTAA    394

BSNT_04108___    395 TCGTTCGTGAACTCACAGGCGGCTTGTATTTCGGCCAGCCGAGCAAACGC    444
                     ||||..|.|||||.||.||||||.|.||||||||..|.|||||||.||..
RBAM_025330__    395 TCGTCAGGGAACTGACGGGCGGCCTCTATTTCGGAGAACCGAGCAGACAG    444

BSNT_04108___    445 TATGTAAACACTGAA---GGTGAGCAGGAAGCAGTAGATACACTGTTTTA    491
                     |||||   ||.||||   ||.||..|||||||.||.|||||.||.|||||
RBAM_025330__    445 TATGT---CAATGAAGCGGGAGAAAAGGAAGCGGTCGATACCCTTTTTTA    491

BSNT_04108___    492 TAAGCGAACG--GAAATTGAACGAGTGATCAGAGAGGGCTTCAAAATGGC    539
                     |||  |||.|  |||||.|||||.||..|||||||.|.|||.||.|||||
RBAM_025330__    492 TAA--GAAAGAAGAAATCGAACGCGTTGTCAGAGAAGCCTTTAAGATGGC    539

BSNT_04108___    540 GGCAGCCAGAAAAGGCAAAGTGACCTCTGTAGATAAAGCGAATGTTCTTG    589
                     .||.|.|||||||||.||||||||.||.||.|||||.||||||||.|||.
RBAM_025330__    540 TGCCGGCAGAAAAGGAAAAGTGACGTCCGTTGATAAGGCGAATGTGCTTT    589

BSNT_04108___    590 AATCAAGCCGGCTGTGGCGTGAAGTGGCTGAGGACGTTGCGAAAGAATTT    639
                     ..||||||.||||||||||.|||...||.|||||..|.||.|||||||||
RBAM_025330__    590 CTTCAAGCAGGCTGTGGCGGGAAACCGCAGAGGAAATCGCAAAAGAATTT    639

BSNT_04108___    640 CCTGATGTGAAGCTTGAGCACATGCTTGTGGATAACGCGGCCATGCAGCT    689
                     |||||.||||.||||||.||.||||||||.|||||.||.||.||||||||
RBAM_025330__    640 CCTGACGTGACGCTTGAACATATGCTTGTCGATAATGCCGCGATGCAGCT    689

BSNT_04108___    690 AATCTATGCACCGAATCAATTTGATGTCGTTGTGACTGAAAATATGTTCG    739
                     .|||||.||.||||..||||||||.|||.|.||.|||||.||||||||||
RBAM_025330__    690 CATCTACGCTCCGAGCCAATTTGACGTCATCGTAACTGAGAATATGTTCG    739

BSNT_04108___    740 GTGATATTTTAAGCGATGAAGCGTCCATGCTTACAGGCTCGCTCGGAATG    789
                     |.||||||||||||||||||||.||||||||.||||||||||||||.|||
RBAM_025330__    740 GCGATATTTTAAGCGATGAAGCCTCCATGCTGACAGGCTCGCTCGGCATG    789

BSNT_04108___    790 CTCCCGTCAGCCAGCCTATCAAGCTCTGGTCTTCATCTGTTTGAACCTGT    839
                     ||.|||||||||||..|||||||.||.||||||||..||||||||||.||
RBAM_025330__    790 CTGCCGTCAGCCAGTTTATCAAGTTCAGGTCTTCACTTGTTTGAACCCGT    839

BSNT_04108___    840 TCATGGCTCCGCGCCTGATATTGCCGGTAAAGGGGTGGCAAATCCGTTCG    889
                     .|||||.||.||||||||.||.||||||||||||.||||.||||||||.|
RBAM_025330__    840 GCATGGATCTGCGCCTGACATCGCCGGTAAAGGGATGGCCAATCCGTTTG    889

BSNT_04108___    890 CAGCCATATTGTCAGCGGCAATGCTTTTGAGAACATCTTTCGGGCTTGAA    939
                     |.||.||.||.||||||||.||||||||||||||||||||||||||||||
RBAM_025330__    890 CGGCGATTTTATCAGCGGCGATGCTTTTGAGAACATCTTTCGGGCTTGAA    939

BSNT_04108___    940 GAGGAAGCGAAAGCTGTAGAAGATGCGGTAAACAAAG--TCTT------G    981
                     .|.||||||.|.||.||.|||.|.||||| ..|||||  .|||      |
RBAM_025330__    940 AACGAAGCGCAGGCGGTGGAAAAGGCGGT-CGCAAAGGTGCTTGCAGACG    988

BSNT_04108___    982 GCTTCTGGGAAAAGAACAAAAGATTTGGCACGG---GGTGAAGAGTTCAG   1028
                     ||.||       .|.|||...|||.|.||.|||   ||..||.| |.|  
RBAM_025330__    989 GCATC-------CGTACACGTGATATCGCCCGGGACGGCCAATA-TGC--   1028

BSNT_04108___   1029 CAGCACTCAGGCCATTACAGAGGAAGTTAAGGCAGCAATCATGAGTGAA-   1077
                     |.|.||.||.|.||||||.||..||||.||.||.|||.|         | 
RBAM_025330__   1029 CGGAACGCATGACATTACTGAAAAAGTAAAAGCCGCATT---------AG   1069

BSNT_04108___   1078 --------AATACAATTTCTAATGTGTGA   1098
                             |||||||..||||..||||||
RBAM_025330__   1070 CCGGCTCGAATACAAAATCTATAGTGTGA   1098


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