Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04160 and RBAM_025570

See Amino acid alignment / Visit BSNT_04160 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:32
# Commandline: needle
#    -asequence dna-align/BSNT_04160___xsa.1.9828.seq
#    -bsequence dna-align/RBAM_025570___xsa.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04160___xsa-RBAM_025570___xsa.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04160___xsa-RBAM_025570___xsa.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04160___xsa
# 2: RBAM_025570___xsa
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1553
# Identity:    1148/1553 (73.9%)
# Similarity:  1148/1553 (73.9%)
# Gaps:         106/1553 ( 6.8%)
# Score: 4188.0
# 
#
#=======================================

BSNT_04160___      1 ATGAAAGGAATGATCAGAGGCATGTCTGAACATCAA----GCAGTGATTC     46
                                          .|||||.|    |||    |||||.||||
RBAM_025570__      1 ---------------------TTGTCTCA----CAATACGGCAGTCATTC     25

BSNT_04160___     47 AAACAGATATCGTAAAAGGAACCATTAACAAAAATATATACGGTCATTTT     96
                     ||||.||||||..|...|||||||||||.|||||.||||||||.|||||.
RBAM_025570__     26 AAACTGATATCACACGGGGAACCATTAATAAAAACATATACGGACATTTC     75

BSNT_04160___     97 GCTGAGCATTTAGGAAGAGGGATTTATGAGGGGATCTGGGTCGGAACGGA    146
                     ||.||.||..|.||||||||.||.||||||||.|||||||||||||..||
RBAM_025570__     76 GCGGAACACCTGGGAAGAGGCATATATGAGGGCATCTGGGTCGGAAAAGA    125

BSNT_04160___    147 CTCAGACATCCCCAATATCAACGGGATACGAAAGGACGTGCTG-----GA    191
                     .||.||.||.||.||||.|..||||    |..|||||| |.||     |.
RBAM_025570__    126 TTCCGATATTCCGAATACCGGCGGG----GTCAGGACG-GATGTCGCCGC    170

BSNT_04160___    192 GGCGCTCAAACAGCTGCACATCCCTGTCCTCAGGTGGCCGGGCGGGTGTT    241
                     .||.|||||||||||.||.||.||.||||||||.|||||||||||.||||
RBAM_025570__    171 CGCCCTCAAACAGCTTCAGATTCCCGTCCTCAGATGGCCGGGCGGCTGTT    220

BSNT_04160___    242 TTGCGGACGAATACCATTGGGCAAACGGTGTCGGTGACCGTAAGACAATG    291
                     ||||.||.||||||||||||||||||||.||.||..|.||.||.||.|||
RBAM_025570__    221 TTGCTGATGAATACCATTGGGCAAACGGCGTAGGGAAACGCAAAACCATG    270

BSNT_04160___    292 CTGAACACTCACTGGGGCGGTACAATTGAATCAAATGAATTCGGAACGCA    341
                     |||||.||.||.||||||||.||.|||||.||.|||||||||||.|||||
RBAM_025570__    271 CTGAATACCCATTGGGGCGGGACGATTGATTCCAATGAATTCGGCACGCA    320

BSNT_04160___    342 TGAATTTATGATGCTTTGCGAGCTGCTTGAATGCGAGCCATATATTTGCG    391
                     .||.||||||||||||||.||.|||||||..|||||.|||||.||...||
RBAM_025570__    321 CGAGTTTATGATGCTTTGTGAACTGCTTGGCTGCGAACCATACATCGCCG    370

BSNT_04160___    392 GCAATGTCGGAAGCGGAACCGTTCAGGAAATGGCGGAGTGGATTGAATAT    441
                     |.||.|||||.||||||||.|||.|.||||||||.||||||||||||||.
RBAM_025570__    371 GAAACGTCGGCAGCGGAACGGTTAAAGAAATGGCTGAGTGGATTGAATAC    420

BSNT_04160___    442 ATGACATTTGAAGAAGGCACGCCGATGTCAGACTGGAGAAAGCAAAATGG    491
                     |||||.|||||||..||||||||||||||.|||||||||||..||||.||
RBAM_025570__    421 ATGACGTTTGAAGCGGGCACGCCGATGTCCGACTGGAGAAAAGAAAACGG    470

BSNT_04160___    492 AAGAGAAGAGCCTTGGAAGCTGAAATATTTCGGCGTGGGCAATGAAAACT    541
                     ..|.|||.|.||.||||||||||.|||||||||..|.||.|||||.||||
RBAM_025570__    471 GCGGGAAAAACCGTGGAAGCTGACATATTTCGGAATAGGAAATGAGAACT    520

BSNT_04160___    542 GGGGCTGCGGCGGCAACATGCATCCCGAATACTACGCAGATCTGTACCGG    591
                     |||||||||||||.|||||||||||.||.||.||.||.||.||.|||.|.
RBAM_025570__    521 GGGGCTGCGGCGGAAACATGCATCCTGAGTATTATGCCGACCTTTACAGA    570

BSNT_04160___    592 CGTTTTCAGACTTATGTCCGCAATTACAGTGGGAATGACATTTATAAAAT    641
                     ...|||||.||.|||||||||||||||||.||.|||||.||.||||||||
RBAM_025570__    571 AACTTTCAAACCTATGTCCGCAATTACAGCGGTAATGAAATCTATAAAAT    620

BSNT_04160___    642 TGCAGGCGGAGCAAATGTGGATGATTTTAATTGGAC----GGACGTG---    684
                     |||.|||||.||.|||||.|||||||        ||    |||| ||   
RBAM_025570__    621 TGCCGGCGGCGCGAATGTCGATGATT--------ACCGCTGGAC-TGAAA    661

BSNT_04160___    685 CTT--ATGAAAAAAGCCGCTGGCCTGATGGACGGGTTGAGTCTTCATTAT    732
                     |||  ||||||||||||||||..||.|||||||||.||||.|||||||||
RBAM_025570__    662 CTTTAATGAAAAAAGCCGCTGATCTCATGGACGGGCTGAGCCTTCATTAT    711

BSNT_04160___    733 TACACGATTCCGGGGGATTTCTGGAACGGCAAAGGATCAGCCACAGAATT    782
                     |||||.||.|||||.|||||||||||.||.|||||||||||.||.||.||
RBAM_025570__    712 TACACAATACCGGGCGATTTCTGGAAGGGGAAAGGATCAGCGACGGAGTT    761

BSNT_04160___    783 CACGGAAGATGAGTGGTTTATTACGATGAAAAAAGC--CAAATACATCGA    830
                     .|||||||||||.|||||.||.||||||||||||||  |..||  ||.||
RBAM_025570__    762 TACGGAAGATGAATGGTTCATCACGATGAAAAAAGCGGCGCAT--ATGGA    809

BSNT_04160___    831 TGAATTGATTCA-AAAACACGGCACGATTATGGACCGGTACGATCCGGAG    879
                     |||||||| ||| ||..|||.||.|.||.|||||.|.|||||||||.||.
RBAM_025570__    810 TGAATTGA-TCACAAGGCACAGCGCCATCATGGATCAGTACGATCCCGAA    858

BSNT_04160___    880 CAGCGGGTCGGGCTGATTATTGATGAATGGGGCACTTGGTTTGATCCCGA    929
                     .|..|.|||||||||||.|||||||||||||||||.|||.|||||||.||
RBAM_025570__    859 AAAAGAGTCGGGCTGATCATTGATGAATGGGGCACGTGGCTTGATCCTGA    908

BSNT_04160___    930 GCCAGGCACGAATCCCGG-TTTCTTATATCAGCAAAACACCATTCGTGAT    978
                     |||||||||||||||.|| |||| |.||||||||.||.||.||.||.||.
RBAM_025570__    909 GCCAGGCACGAATCCGGGCTTTC-TGTATCAGCAGAATACGATCCGCGAC    957

BSNT_04160___    979 GCACTGGTGGCGGCTTCTCATTTCCACATTTTCCATCAGCATTGCCG-CC   1027
                     ||.||.||.||.||..|.|||||.||||||||.|||||||| |||.| ||
RBAM_025570__    958 GCCCTTGTCGCAGCCACGCATTTTCACATTTTTCATCAGCA-TGCAGACC   1006

BSNT_04160___   1028 GGGTGCAAATGGCCAACATCGCCCAAACAGTAAACGTTCTGCAAGCGATG   1077
                     |.||.||.||||||||.|||||.|||||.||.||.||.||.||.||.|||
RBAM_025570__   1007 GCGTACAGATGGCCAATATCGCGCAAACCGTCAATGTGCTTCAGGCAATG   1056

BSNT_04160___   1078 ATTTTGACTG-AGGGCGAG-CGGATGCTTTTGACACCGACGTACCATGTA   1125
                     ||..||||.| ||||..|| |  |||||..||||.|||||.||.|||||.
RBAM_025570__   1057 ATCCTGACAGAAGGGAAAGAC--ATGCTGCTGACGCCGACATATCATGTG   1104

BSNT_04160___   1126 TTCAATATGTTTAAGGTGCACCAGGACGCTTCTCTTTTAGCAACAGAGAC   1175
                     ||..||||||||||||||||.|||||||||||||||||.||.|||||.||
RBAM_025570__   1105 TTTGATATGTTTAAGGTGCATCAGGACGCTTCTCTTTTGGCGACAGAAAC   1154

BSNT_04160___   1176 AATGTCTGCCGACTATGAATGGAAGGGTGAAAC-----GCTTCCGCAAAT   1220
                     ||...|.|||...||.||||||||.|     ||     |||.||||||.|
RBAM_025570__   1155 AAAAGCAGCCAGGTACGAATGGAATG-----ACGGCCGGCTCCCGCAAGT   1199

BSNT_04160___   1221 CAGCATTTCAGCGTCGAAACAAGCTGAA-GGTGATGTCAATATCACTATT   1269
                     |||||||||||||||.|||| |||..|| ||.||..|..||||||..|||
RBAM_025570__   1200 CAGCATTTCAGCGTCCAAAC-AGCAAAACGGAGACATACATATCAGCATT   1248

BSNT_04160___   1270 TGCAACATCGATCACCAAAACAAAGCGGAGGCGGAAATCGAGCTGAGAGG   1319
                     |||||.||||||||.|...|.|||||.||.|.|.|.||.||.|||.|.||
RBAM_025570__   1249 TGCAATATCGATCATCTGCAAAAAGCTGATGTGAAGATTGAACTGCGGGG   1298

BSNT_04160___   1320 CCTACACAAGGCAGCGGACCATCCCGGAGTCATTCTT-ACGGCAGAAAAA   1368
                     |.|..|.|||.|||.|.|.|.|.|.|||...|||||| || ||.||||||
RBAM_025570__   1299 CATGAAAAAGACAGGGAAGCCTTCGGGAACGATTCTTCAC-GCGGAAAAA   1347

BSNT_04160___   1369 ATGAATGCGCATAACACGTTTGACGATCCTCATCATGTCAAACCGGAATC   1418
                     ||||||||.||.||.||.||...|..|||..|..|.|||||||| |||.|
RBAM_025570__   1348 ATGAATGCCCACAATACATTCAGCAGTCCGGAAAACGTCAAACC-GAAGC   1396

BSNT_04160___   1419 C---TTCAGACAATACACGCTCAGCAAAAA------CAAACTGAAAGTAA   1459
                     |   |||.|....|    ||||    ||||      .|||||..|.|...
RBAM_025570__   1397 CGTTTTCCGGGTTT----GCTC----AAAAGGGCGGAAAACTTGAGGCGG   1438

BSNT_04160___   1460 AACTCCCGCCAATGTCAGTCGTCTTACTTACGCTGCGTGCTTAT---TCT   1506
                     |.||.||.||.|||.|.||.||..||.|.|||||||.|||..||   |||
RBAM_025570__   1439 AGCTTCCTCCGATGGCGGTTGTACTAATCACGCTGCCTGCGGATCCATCT   1488

BSNT_04160___   1507 TAA   1509
                     |||
RBAM_025570__   1489 TAA   1491


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