Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04167 and RBAM_025610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04167___ysiA.1.9828.seq
# -bsequence dna-align/RBAM_025610___ysiA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04167___ysiA-RBAM_025610___ysiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04167___ysiA-RBAM_025610___ysiA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04167___ysiA
# 2: RBAM_025610___ysiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 596
# Identity: 469/596 (78.7%)
# Similarity: 469/596 (78.7%)
# Gaps: 16/596 ( 2.7%)
# Score: 1839.0
#
#
#=======================================
BSNT_04167___ 1 ------TTGAAGCAAAAACGGCCAAAGTATATGCAGATTATTGATGCAGC 44
|||||.||||||||||||||||||||||||||||||||||||||
RBAM_025610__ 1 ATGACATTGAACCAAAAACGGCCAAAGTATATGCAGATTATTGATGCAGC 50
BSNT_04167___ 45 AGTAGAAGTCATTGCAGAAAACGGCTACCACCAGTCACAGGTATCCAAAA 94
||||||||||||.||.|||||||||||.|||||.||||||||.|||||||
RBAM_025610__ 51 AGTAGAAGTCATAGCGGAAAACGGCTATCACCAATCACAGGTGTCCAAAA 100
BSNT_04167___ 95 TTGCCAAACAAGCTGGGGTAGCGGACGGCACCATCTATCTCTATTTTAAA 144
|.|||||.||.||.||.||.||||||||||||||||||.|.|||||.|||
RBAM_025610__ 101 TCGCCAAGCAGGCCGGCGTTGCGGACGGCACCATCTATTTATATTTCAAA 150
BSNT_04167___ 145 AACAAAGAAGATATTTTAATTTCTCTTTTCAAAGAAAAAATGGGTCAATT 194
||||||||.|||||..|.|||||||||||.||||||||.|||||.||.||
RBAM_025610__ 151 AACAAAGAGGATATACTCATTTCTCTTTTTAAAGAAAAGATGGGCCAGTT 200
BSNT_04167___ 195 TATTGAGCGGATGGAAGAGGACATTAAAGAAAAAGCAACAGCGAAAGAGA 244
.|||||.||.||||||||.||..|.|||||||||.|.||.||.|||||.|
RBAM_025610__ 201 CATTGAACGCATGGAAGAAGAAGTGAAAGAAAAAACGACGGCAAAAGAAA 250
BSNT_04167___ 245 AATTGGCGCTTGTGATTTCAA--AGCATTTTTCCCTTTTAGCGG--GTGA 290
||.|.||.||.||.||| || |||||||..|.||..| ||| .|||
RBAM_025610__ 251 AACTCGCCCTCGTTATT--AAGCAGCATTTCACACTGCT--CGGCAATGA 296
BSNT_04167___ 291 CCATAATCTCGCAATTGTCACGCAGCTTGAGCTCCGCCAATCCAACTTGG 340
||...|.|||||.|||||.||.||||||||||||.|.||.||.||..|..
RBAM_025610__ 297 CCGCCACCTCGCGATTGTGACCCAGCTTGAGCTCAGACAGTCAAATATCA 346
BSNT_04167___ 341 AGCTGCGCCAAAAAATCAACGAAATATTAAAAGGCTACTTAAATATTTTG 390
|||||||||..||||||||.||.||.||||||||.||.|||||.||..||
RBAM_025610__ 347 AGCTGCGCCTGAAAATCAATGATATTTTAAAAGGTTATTTAAACATGCTG 396
BSNT_04167___ 391 GATGGCATTTTGACGGAAGGCATACAA-TCAGGCGAATTAAAAGAAGGCC 439
||...|||||||||.|||||.|| ||| ||.||.||||..|||||....|
RBAM_025610__ 397 GACACCATTTTGACCGAAGGAAT-CAAGTCGGGGGAATGGAAAGACAATC 445
BSNT_04167___ 440 TCGACGTCCGCCTCGCCCGGCAGATGATTTTTGGAACGATTGACGAAACC 489
||||||||||||||||||||||||||||.||.||.|||||.||.|||||.
RBAM_025610__ 446 TCGACGTCCGCCTCGCCCGGCAGATGATATTCGGGACGATAGATGAAACA 495
BSNT_04167___ 490 GTGACAACATGGGTGATGAATGACCAAAAGTACGATCTTGCTGCGCTTTC 539
||||||||||||||||||||.||.|||||.||.||||||.|.|...|.||
RBAM_025610__ 496 GTGACAACATGGGTGATGAACGATCAAAAATATGATCTTCCGGATTTGTC 545
BSNT_04167___ 540 AGACAGCGTTTTAGAATTATTGGTGTCCGGAATTCATAATAAGTAA 585
|||||..||.||.||..|.||||||||.|||||||||.|.||.|||
RBAM_025610__ 546 AGACAAGGTATTGGAGCTGTTGGTGTCAGGAATTCATCAAAACTAA 591
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