Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05867 and RBAM_025630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:23
# Commandline: needle
# -asequence dna-align/BSNT_05867___ywbB.1.9828.seq
# -bsequence dna-align/RBAM_025630___ywbB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05867___ywbB-RBAM_025630___ywbB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05867___ywbB-RBAM_025630___ywbB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05867___ywbB
# 2: RBAM_025630___ywbB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity: 411/783 (52.5%)
# Similarity: 411/783 (52.5%)
# Gaps: 213/783 (27.2%)
# Score: 823.0
#
#
#=======================================
BSNT_05867___ 1 ---------ATGCTAGATTATATATGGTTAGATGACGAATCACCAATCTT 41
|.|||..|| ||.||.||.|.|...||.|||.|
RBAM_025630__ 1 TTGCTGGAAACGCTGCAT---------TTTGAAGAGGGAGTTCCTATCCT 41
BSNT_05867___ 42 ACAACAAGTACCAGTTGAA------TACTCATCTGCTGCACTTATCTTTT 85
.|..||..|.|| ||| || |.||.||.|| ||| |||.
RBAM_025630__ 42 GCGCCAGCTGCC----GAAGCCGTTTA--CGTCGGCCGC-CTT---TTTG 81
BSNT_05867___ 86 C----TCCTTTTATCCAAATGCCTGAAGGATGGG-AGAATGCAAAAAGAA 130
| |||.|||.|||..|||||.||.||.|||| ||| || |||||..
RBAM_025630__ 82 CTCCATCCCTTTGTCCGGATGCCGGATGGGTGGGAAGA--GC-AAAAGCG 128
BSNT_05867___ 131 AAAATG--ATTACGAGCATATTTATCCAAACGATGATGAAATAAGAGGAA 178
.|||.| .|||.||.|||||.|||||.|..|||||.||.||.|..|..|
RBAM_025630__ 129 CAAACGGCCTTATGAACATATGTATCCGAGTGATGAGGAGATCATCGCGA 178
BSNT_05867___ 179 TAGGCAAGGCTGTTTCCTGGAAGAAGGTTATGTCTTCTTGCG------GC 222
|.||||...|.|||||||||.|....||.|||.|...||||| ||
RBAM_025630__ 179 TGGGCAGACCCGTTTCCTGGCAATCCGTCATGACCGTTTGCGGATTGCGC 228
BSNT_05867___ 223 TTTCAAACACATGCTGAGCTGGCGCTGGCTTTAATGACGTCGATAGGTGC 272
|.|.|||.| |||...|||||.||..|.||||| |||
RBAM_025630__ 229 TCTGAAAAA------GAGACAGCGCTTGCGCTTATGAC---------TGC 263
BSNT_05867___ 273 T-TTAAGGGACGAGTTCGCGA-GAGAGGATTTG-----GCTGA------- 308
| |.|.||.|| ||||.|| || ||.|| .||||
RBAM_025630__ 264 TGTCACGGCAC---TTCGGGATGA----ATATGCACATCCTGAATCCGCC 306
BSNT_05867___ 309 --GGTGTTACATGAAAACATAA--------ATGGAGACCTCTATTATCCC 348
|.|||| ||| ||...||.||.||.|..||.
RBAM_025630__ 307 AGGCTGTT-----------TAATCGGCTTCATCCCGATCTGTACTTGCCG 345
BSNT_05867___ 349 AGTGAGGATCATATTTCA-AATTTTCATATTCCGAG---TTTGGTAAAGG 394
||.||.|||...|.|||| .|||||.| ||||||.| ||||| |.|
RBAM_025630__ 346 AGCGACGATGTCACTTCACCATTTTTA-ATTCCGGGACTTTTGG---ATG 391
BSNT_05867___ 395 TATTAGGTGCGAACGG-ATCCAATCGGT---TTTATTACGCAGAACCGAT 440
|.||..||.|.||.|| || .||.||.| .|||||| .||.|||.|
RBAM_025630__ 392 TGTTCCGTTCAAAAGGCAT-AAAGCGCTGCACTTATTA---TGAGCCGGT 437
BSNT_05867___ 441 TGTGGA-AAACCGCGGCGT-TTTGGAC---AT--AACTGAGGC--CAACT 481
.|..|| ||| |||.| |||..|| || |||.|.|.| ||..|
RBAM_025630__ 438 CGAAGAGAAA----GGCATATTTTCACTCAATCAAACGGCGCCTTCAGAT 483
BSNT_05867___ 482 ---TGCGGACGGTTCTTGATGAAGCCGCAGCAGA---GCTCGTTTTAACT 525
|||||| |||.||..| ||.|| |.||.|| .|.
RBAM_025630__ 484 GTATGCGGA------TTGCTGCGG-----GCTGACATGATCATT---GCC 519
BSNT_05867___ 526 GATGAGAAAATGGATTTTGTG-----TTTATGAGTGTATATGACTCATTC 570
||||| ||||.|| .|.| ||||||||..|||||| ||||
RBAM_025630__ 520 GATGA-AAAACGG----CGCGCCGCTTTTATGAGCATATATG----ATTC 560
BSNT_05867___ 571 ATTAATG----TCTTTTTAGCCA---AAGATAAAAACATCCATGAATTGG 613
.||.|.| |||||.| || |||||.||.||||.|
RBAM_025630__ 561 TTTTACGACACTCTTTCT---CATGGAAGATCAAGACATGC--------- 598
BSNT_05867___ 614 TTGAGCGT--------------ATGGGCTGGGAAGCTATGATTTGCGATG 649
||| |||.|.||||||||..|.||||||..||
RBAM_025630__ 599 -----CGTCTGTCATCCGCGCCATGAGTTGGGAAGCCGTCATTTGCTCTG 643
BSNT_05867___ 650 AGTCAACGTATATCAGTTGGTAT----AGATAA 678
|..|..|.|..||.|..|||||| | ||||
RBAM_025630__ 644 ATACGGCCTGCATAAACTGGTATTCTCA-ATAA 675
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