Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04179 and RBAM_025700
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:34
# Commandline: needle
# -asequence dna-align/BSNT_04179___pheT.1.9828.seq
# -bsequence dna-align/RBAM_025700___pheT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04179___pheT-RBAM_025700___pheT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04179___pheT-RBAM_025700___pheT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04179___pheT
# 2: RBAM_025700___pheT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2440
# Identity: 1907/2440 (78.2%)
# Similarity: 1907/2440 (78.2%)
# Gaps: 50/2440 ( 2.0%)
# Score: 7397.5
#
#
#=======================================
BSNT_04179___ 1 ATGTTTGTTTCTTATAAATGGTTAGAGGATTATGTTGATTTAAAAGGCAT 50
||||||||||||||||||||||||||.|||||.|||||.||..|.||.||
RBAM_025700__ 1 ATGTTTGTTTCTTATAAATGGTTAGAAGATTACGTTGACTTGCAGGGAAT 50
BSNT_04179___ 51 GGACCCGGCTGTTCTTGCTGAAAAAATTACAAGAGCCGGTATTGAGGTTG 100
.||||||||.||.|||||.|||||||||||.||||||||||||||.||||
RBAM_025700__ 51 CGACCCGGCCGTGCTTGCAGAAAAAATTACGAGAGCCGGTATTGAAGTTG 100
BSNT_04179___ 101 AAGGAATTGAATACAAAGGAGAAGGCATCAAAGGCGTTGTCATCGGCCAT 150
|.||.||.||.||.|||||.||.|||.|.|||||||||||||||||.||.
RBAM_025700__ 101 AGGGTATCGAGTATAAAGGGGAGGGCGTAAAAGGCGTTGTCATCGGACAC 150
BSNT_04179___ 151 GTGCTGGAGCGCGAGCAGCACCCGAATGCTGATAAGCTGAATAAGTGCCT 200
|||||.||||||||.||||||||||||||.||.||.||.||.||.|||||
RBAM_025700__ 151 GTGCTTGAGCGCGAACAGCACCCGAATGCCGACAAACTCAACAAATGCCT 200
BSNT_04179___ 201 TGTGGATATCGGAGCTGAAGCCCCTGTACAAATCATTTGCGGCGCGCCAA 250
|||.|||||.||.||.||.|..||.||.||.||.||.||||||||.||.|
RBAM_025700__ 201 TGTTGATATTGGTGCGGAGGAACCCGTGCAGATTATCTGCGGCGCCCCGA 250
BSNT_04179___ 251 ATGTGGATAAGGGACAAAAAGTCGCAGTTGCAACAGTCGGAGCAGTGCTG 300
||||.|||||.|||||.||.||.||.||||||||.||||||||.|||||.
RBAM_025700__ 251 ATGTTGATAAAGGACAGAAGGTTGCCGTTGCAACGGTCGGAGCCGTGCTT 300
BSNT_04179___ 301 CCGGGCAATTTCAAAATCAAAAAAGCCAAGCTTCGCGGTGAAGAATCAAA 350
||.||||||||||||||.||||||||||||||.|||||.||||..||..|
RBAM_025700__ 301 CCCGGCAATTTCAAAATTAAAAAAGCCAAGCTGCGCGGCGAAGCGTCTCA 350
BSNT_04179___ 351 TGGCATGATCTGTTCCTTACAGGAGCTTGGCATCGAAAGCAAACTTGTGG 400
.|||||||||||||||.|.||||||||.|||||.||||||||.||.||||
RBAM_025700__ 351 CGGCATGATCTGTTCCCTTCAGGAGCTCGGCATTGAAAGCAAGCTCGTGG 400
BSNT_04179___ 401 CGAAGGAGTATGCAGAAGGCATTTTCGTATTCCCGAATGACGCTGAAACA 450
||||.||.|||||.||||||||||||||.||.||||||||.||||||||
RBAM_025700__ 401 CGAAAGAATATGCGGAAGGCATTTTCGTTTTTCCGAATGATGCTGAAAC- 449
BSNT_04179___ 451 GGAAGC-GATGCCTTAGCGGCTTTACAGCTTGACGATGCGATTCTTGAGC 499
||.||| ||.||..|.|||||..|.||||||||.|||||||||.|.||..
RBAM_025700__ 450 GGGAGCTGACGCAATGGCGGCCCTTCAGCTTGATGATGCGATTTTAGAAT 499
BSNT_04179___ 500 TGGGTTTAACGCCAAACCGCGCCGATGCCATGAACATGCTTGGTGTTGCT 549
||||.||||||||.|||||||||||.||.||||||||||||||.||.|||
RBAM_025700__ 500 TGGGCTTAACGCCGAACCGCGCCGACGCGATGAACATGCTTGGCGTGGCT 549
BSNT_04179___ 550 TACGAGGTTGCGGCGATTTTAGACACTGAGGTAAAGCTTCCGCAAACGGA 599
||.||.||||||||.||..|.|.|.|.|||||||||||||||.|
RBAM_025700__ 550 TATGAAGTTGCGGCTATCCTCGGCGCAGAGGTAAAGCTTCCGGA------ 593
BSNT_04179___ 600 TTACCCGGCT------------GCTTCAGAACAAGCGTCTGATTACATTT 637
|||| ||..|||||.|||||.|.|||....|||
RBAM_025700__ 594 ------GGCTTCATATGAAAAAGCGGCAGAAAAAGCGGCGGATGCTGTTT 637
BSNT_04179___ 638 CAGTCAAAATTGAAGATCAAG-AAGCGAACCCGCTGTACACTGCAAAAAT 686
|.||.||..|||||||| |.| |.||.||.||||..||..|.||||||||
RBAM_025700__ 638 CCGTTAAGGTTGAAGAT-ACGCAGGCCAATCCGCATTATGCCGCAAAAAT 686
BSNT_04179___ 687 CATTAAAAATGTCACGATTGCTCCGTCACCGCTTTGGATGCAGACAAAAC 736
|||||||||.||||..||.|..|||||.|||||||||||||||||.||||
RBAM_025700__ 687 CATTAAAAACGTCAAAATCGGCCCGTCTCCGCTTTGGATGCAGACGAAAC 736
BSNT_04179___ 737 TGATGAATGCAGGCATTCGTCCGCACAACAACGTCGTTGACATCACAAAT 786
||||||||||||||||.||||||||.||.||||||||.||.||.|||||.
RBAM_025700__ 737 TGATGAATGCAGGCATCCGTCCGCATAATAACGTCGTGGATATTACAAAC 786
BSNT_04179___ 787 TTTGTCCTGTTGGAATACGGACAGCCGCTTCATGCATTTGATTATGACAG 836
||.|||||..|.||.|||||||||||||||||.||.||.|||||.|||.|
RBAM_025700__ 787 TTCGTCCTCCTTGAGTACGGACAGCCGCTTCACGCTTTCGATTACGACCG 836
BSNT_04179___ 837 ATTTGGCTCTAAGGAAGTCGTAGTAAGAAAAGCAGCTGAGAATGAAATGA 886
.||.||.||.||.||.|||||.||.||||||||.||.||.||.||||..|
RBAM_025700__ 837 GTTCGGTTCAAAAGAGGTCGTCGTCAGAAAAGCGGCGGAAAACGAAACCA 886
BSNT_04179___ 887 TCGTCACTCTTGATGATCAAGAACGTAAGCTGT----CCGCCGATCACCT 932
||||.||.||.|||||.|||||.||.||||||| |.||| || |
RBAM_025700__ 887 TCGTAACGCTGGATGAACAAGAGCGCAAGCTGTCAAGCAGCC-AT----T 931
BSNT_04179___ 933 T-GTTATTACAAACGGAATGAAAGCGCAGGCCGTTGCGGGTGTCATGGGA 981
| ||.||.||||||||||..||||||||.|||||||||||.||||||||.
RBAM_025700__ 932 TGGTCATCACAAACGGAAAAAAAGCGCAAGCCGTTGCGGGAGTCATGGGC 981
BSNT_04179___ 982 GGAGCAGAGTCAGAGGTTCAGGAAGATACGAAAACGATTTTGCTTGAGGC 1031
|||||.|||||.||.||.|..|||||.||.|...|||||||.||.||.||
RBAM_025700__ 982 GGAGCTGAGTCTGAAGTCCGCGAAGACACCACTGCGATTTTACTGGAAGC 1031
BSNT_04179___ 1032 TGCGTATTTCAACGGGCAGACGGTTCGCAAGGCTTCCAAAGACCTTGGTT 1081
.||.||||||.||||.|||||.||.|||||.||.||.|.||||||.||.|
RBAM_025700__ 1032 CGCTTATTTCGACGGACAGACCGTCCGCAAAGCGTCGAGAGACCTCGGAT 1081
BSNT_04179___ 1082 TGAGAAGTGACTCAAGCGTAAGATTTGAAAAAGGAATTGATCCGGCGCGC 1131
|||||||.||..|.||||..||||.|||||||||.|||||||||||.|||
RBAM_025700__ 1082 TGAGAAGCGAAGCGAGCGCCAGATATGAAAAAGGCATTGATCCGGCCCGC 1131
BSNT_04179___ 1132 GTACGTCTTGCAGCAGAACGGGCTGC-GCAG-CTGATCCATCTGTATGCC 1179
||....||.||.||.|||||||| | |||| ||.||.||....||||||
RBAM_025700__ 1132 GTTTTGCTGGCGGCTGAACGGGC--CTGCAGTCTCATTCAGGCATATGCC 1179
BSNT_04179___ 1180 GGCGGTGAGGTGCTTGCAGGAACAGTTGAGGAAGATCACCTGACAATCGA 1229
|||||.||.|||||..||||.||.|||||.|||.|.||.||||.||||||
RBAM_025700__ 1180 GGCGGAGAAGTGCTCTCAGGCACGGTTGAAGAAAACCATCTGAAAATCGA 1229
BSNT_04179___ 1230 AGCAAATAACATTCACGTATCTGCTGACAAAGTGAGCAGCGTTCTAGGCC 1279
||||||.|||||||||||.||||.|||.|||||||.|..|||.||.|||.
RBAM_025700__ 1230 AGCAAACAACATTCACGTGTCTGTTGAAAAAGTGAACGCCGTACTCGGCA 1279
BSNT_04179___ 1280 TGACGATCAGTAAAGAAGAACTGATCAGCATTTATAAACGTCTCGGTTTT 1329
||||.|||..||||||||||.|.|||||||||||.||.||.|||||.|||
RBAM_025700__ 1280 TGACAATCGCTAAAGAAGAAATCATCAGCATTTACAAGCGCCTCGGGTTT 1329
BSNT_04179___ 1330 ACGGTCGGTGAAGCGGGTGAACTTCTCGTTGTGACTGTCCCATCACGCCG 1379
.|.|||||||||||.|..||..|||||||.||.||.||.||.||.|||||
RBAM_025700__ 1330 GCAGTCGGTGAAGCTGAAGACGTTCTCGTCGTAACGGTGCCGTCGCGCCG 1379
BSNT_04179___ 1380 CGGCGACATTACAATAGAAGAGGATTTAATCGAAGAAGCGGCAAGACTGT 1429
|||.||.||||.|||||||||.||..|.||.|||||||||||.|||.|||
RBAM_025700__ 1380 CGGAGATATTAGAATAGAAGAAGACCTGATTGAAGAAGCGGCGAGATTGT 1429
BSNT_04179___ 1430 ACGGCTACGATAACATTCCGTCTACGCTTCCTGAGACAGCGGGAACTACA 1479
||||.||.||.||.||.|||||.||||||||.||.||.||.||.||.|||
RBAM_025700__ 1430 ACGGGTATGACAATATCCCGTCCACGCTTCCGGAAACGGCCGGCACGACA 1479
BSNT_04179___ 1480 GGCGGATTAACGCCATACCAGGCAAAACGCCGTAAAGTCAGACGCTTCCT 1529
|||||.||.||.||.||.||||||||||||||.|||||.|||||.|||||
RBAM_025700__ 1480 GGCGGCTTGACACCGTATCAGGCAAAACGCCGGAAAGTGAGACGTTTCCT 1529
BSNT_04179___ 1530 TGAAGGCGCAGG-CTTATCACAAGCCATCACTTACTCACTGACAAACGAG 1578
||||||.||.|| ||| ||||||||.|.||||||.|||.||||.||.||.
RBAM_025700__ 1530 TGAAGGAGCGGGTCTT-TCACAAGCGACCACTTATTCATTGACGAATGAT 1578
BSNT_04179___ 1579 AAGAAAGCGGCAGCGTTTGCGATTGAAAAGTCATTGAATACTGTGCTTGC 1628
||.||||||||.||.||||||||.|||||.|||||.||.||..|||||||
RBAM_025700__ 1579 AAAAAAGCGGCCGCTTTTGCGATCGAAAAATCATTCAACACGATGCTTGC 1628
BSNT_04179___ 1629 GCTTCCAATGAGTGAAGAAAGAAGCATTCTCAGACACAGTCTTGTTCCGA 1678
.||.||.|||||.||||||||||||||||||||||||||.||.||.||||
RBAM_025700__ 1629 TCTGCCGATGAGCGAAGAAAGAAGCATTCTCAGACACAGCCTCGTGCCGA 1678
BSNT_04179___ 1679 ATCTGCTTGATTCTGTTTCTTACAACCTCGCGAGGCAGACTGACTCAGTT 1728
||||.|||||..|.|||||.|||||.||.||.||.||||||||.||.|||
RBAM_025700__ 1679 ATCTTCTTGAAGCCGTTTCATACAATCTGGCCAGACAGACTGATTCCGTT 1728
BSNT_04179___ 1729 GCACTGTACGAAGTCGGCTCCGTTTTCCTGACGAAGGAAGAGGACACAAA 1778
||..|.||.|||...||.||.||.||.||||||||.|||||..|||||||
RBAM_025700__ 1729 GCTTTATATGAAACGGGTTCTGTATTTCTGACGAAAGAAGAAAACACAAA 1778
BSNT_04179___ 1779 ACCTGTTGAAACAGAACGCGTAGCAGGAGCTGTTACCGGATTATGGCGCA 1828
|||.|||||||.||||||.||.||.||||||||.||||||||.|||||||
RBAM_025700__ 1779 ACCGGTTGAAAAAGAACGGGTTGCCGGAGCTGTAACCGGATTGTGGCGCA 1828
BSNT_04179___ 1829 AGCAGCTATGGCAGGGTGAAAAGAAACCAGTTGATTTCTTTGTTGTCAAA 1878
|..|..|||||||||||||.||.||.||.|||||||||||.||.|.||||
RBAM_025700__ 1829 AAAATTTATGGCAGGGTGAGAAAAAGCCGGTTGATTTCTTCGTCGCCAAA 1878
BSNT_04179___ 1879 GGAATTGTAGAAGGGCTGTTAGACAAACTCAACGTCCTAGACAGCATTGA 1928
|||||.||.|||||.|||.|..|..||.|.||.||...||||.|..||||
RBAM_025700__ 1879 GGAATCGTTGAAGGCCTGCTGCATCAATTGAATGTGTCAGACCGGGTTGA 1928
BSNT_04179___ 1929 ATTTGTACAGTCTGAACGCAAACAGCTGCATCCGGGCAGAACAGCGAACA 1978
||||||.|||||.|||||||||.|..|||||||.|||.|.||.||.||||
RBAM_025700__ 1929 ATTTGTCCAGTCAGAACGCAAAAACATGCATCCCGGCCGGACGGCAAACA 1978
BSNT_04179___ 1979 TTTTATTGAATGGTTCTCTGATCGGCTTCATCGGCCAAGTCCACCCTTCA 2028
||.|.|||||.|||||.||...|||.||.||||||||.||.||.||..||
RBAM_025700__ 1979 TTCTGTTGAACGGTTCGCTTGCCGGATTTATCGGCCAGGTGCATCCGGCA 2028
BSNT_04179___ 2029 TTGGAAAAAGAACTGGATATAAAGGAAACATACGTATTTGAGCTCGATCT 2078
.||||||||||.||||||||.||.|||||.||.||.||.|||||.|||||
RBAM_025700__ 2029 ATGGAAAAAGAGCTGGATATCAAAGAAACGTATGTGTTCGAGCTTGATCT 2078
BSNT_04179___ 2079 TCATGCGTTGCTCGCGGCAGAAACAGCACCGCTTGTTTACACGGCGATTC 2128
.||.|||.|.||..|.|..|||||||.|||..|.||.||.|||.||||||
RBAM_025700__ 2079 GCACGCGCTTCTGACCGAGGAAACAGAACCTGTCGTGTATACGCCGATTC 2128
BSNT_04179___ 2129 CGAAATATCCGTCTGTGACACGTGATATTGCTCTTGTAACAGATAAAACC 2178
||||.||.||||||||.||.||.||.|||||.|||||..|||||||||||
RBAM_025700__ 2129 CGAAGTACCCGTCTGTCACGCGCGACATTGCGCTTGTGGCAGATAAAACC 2178
BSNT_04179___ 2179 GTCACAAGCGGACAGCTCGAGAG-CGTCATTAAAGAGGCTGGCGGCAAGC 2227
||.||||||||||||||||| || |||.||.|||||.||.|||||...||
RBAM_025700__ 2179 GTTACAAGCGGACAGCTCGA-AGCCGTGATCAAAGAAGCCGGCGGTGCGC 2227
BSNT_04179___ 2228 TTCTGAAAGAGGTAACCGTCTTTGACGTATACGAAGGCGAACATATGGAG 2277
|.||||||||.||.|||||.|||||.||.||||||||.||.||||||||.
RBAM_025700__ 2228 TGCTGAAAGAAGTCACCGTATTTGATGTGTACGAAGGTGAGCATATGGAA 2277
BSNT_04179___ 2278 GAAGGCAAGAAGTCAGTCGCTTTCTCACTCCAGTATGTCAACCCTGAACA 2327
||||||||.||.||.|||||.|||||.|||||.|||||.|||||||||||
RBAM_025700__ 2278 GAAGGCAAAAAATCCGTCGCCTTCTCGCTCCAATATGTTAACCCTGAACA 2327
BSNT_04179___ 2328 AACACTGACTGAAGAAGAAGTGACAAAGGCGCACAGCAAA--GTGCTGAA 2375
||||.||||.||||||||||||||||| .|.|||..||| ||||||||
RBAM_025700__ 2328 AACATTGACAGAAGAAGAAGTGACAAA--AGTACATGAAAACGTGCTGAA 2375
BSNT_04179___ 2376 AGCGTTAGAAGACACATATCAAGCTGTTTTAAGAGGCTGA 2415
||||.|.|||||.||.|||||.||.||.||||||||.|.|
RBAM_025700__ 2376 AGCGCTGGAAGAAACGTATCAGGCCGTATTAAGAGGATAA 2415
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