Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04188 and RBAM_025750

See Amino acid alignment / Visit BSNT_04188 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:35
# Commandline: needle
#    -asequence dna-align/BSNT_04188___ysfC.1.9828.seq
#    -bsequence dna-align/RBAM_025750___ysfC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04188___ysfC-RBAM_025750___ysfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04188___ysfC-RBAM_025750___ysfC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04188___ysfC
# 2: RBAM_025750___ysfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1443
# Identity:    1070/1443 (74.2%)
# Similarity:  1070/1443 (74.2%)
# Gaps:          60/1443 ( 4.2%)
# Score: 3859.0
# 
#
#=======================================

BSNT_04188___      1 ATGA--TCACCAAGGATGTAAAGGAGCAGCTGATTCGGGTC-TCCGGAC-     46
                     ||||  ||||.|  ||.|.|||  ||.|||       |.|| ||||||| 
RBAM_025750__      1 ATGATTTCACGA--GAGGCAAA--AGAAGC-------GTTCATCCGGACG     39

BSNT_04188___     47 -------CAGAAAACTTTGATGACTCGAATGCCGGCCGTCTCGTCTATTC     89
                            ..||.||.|.||||||.||....||.||||||||.||.|||||
RBAM_025750__     40 GTCGGGAAGGAGAATTATGATGATTCAGCGGCGGGCCGTCTTGTGTATTC     89

BSNT_04188___     90 ATATGATGCGACGCCTCAGTATCAGTCTATGCCTGATGCCGTGATTGCTC    139
                     .||||||||..|.||||||...||..|.|||||.|||||.||.||.||.|
RBAM_025750__     90 TTATGATGCAGCTCCTCAGCTGCAAGCCATGCCGGATGCGGTCATCGCCC    139

BSNT_04188___    140 CGAGGAATACTGAAGAAGTATCACGCATTTTAACAATTTGCAGCGAACAT    189
                     |..|.|...|.||.||.||.||.||.||.|||||.|||||||||...|||
RBAM_025750__    140 CCCGCAGCGCGGATGACGTGTCCCGTATATTAACGATTTGCAGCAGGCAT    189

BSNT_04188___    190 CGA-GTGCCGATCGTTCCAAGAGGATCAGGGACAAACCTGTGCGGCGGCA    238
                      || .|.||||||||.|||||.||.|||||.||||||.|.||||||||||
RBAM_025750__    190 -GACATTCCGATCGTGCCAAGGGGTTCAGGCACAAACTTATGCGGCGGCA    238

BSNT_04188___    239 CGTGCCCGACTGAAGGCGGACTTGTGCTTCTCTTTAAGCACATGAACCAG    288
                     |.||.|||.||||||||||.|||||||||.|.||.||.||.|||||||..
RBAM_025750__    239 CATGTCCGTCTGAAGGCGGGCTTGTGCTTTTATTCAAACATATGAACCGC    288

BSNT_04188___    289 ATTCTTGAGATTGATGAAGAAAATTTAACTGCCACAGTTCAGCCGGGCGT    338
                     |||||.||.||.||||||||||||||.||.||.||.||.|||||||||||
RBAM_025750__    289 ATTCTAGAAATCGATGAAGAAAATTTGACGGCAACCGTCCAGCCGGGCGT    338

BSNT_04188___    339 CATTACGTTGGATATGATCCGGGCAGTTGAAAGCAAAGGTTTATTTTATC    388
                     .||||||...|||||||||||.||.||||||...||||||||||||||||
RBAM_025750__    339 GATTACGCAAGATATGATCCGTGCGGTTGAACAAAAAGGTTTATTTTATC    388

BSNT_04188___    389 CGCCTGACCCGAGTTCTATGAAAATATCAACTATCGGGGGCAACATCAAT    438
                     |||||||.|||||....|||||||||||.||.|||||.||.||.||.|||
RBAM_025750__    389 CGCCTGATCCGAGCAGCATGAAAATATCGACAATCGGCGGGAATATTAAT    438

BSNT_04188___    439 GAAAATTCCGGCGGGCTCCGCGGATTAAAATACGGCGTCACCCGCGACTA    488
                     |||||||||||||||||.|||||.||.||.||||||||||||||.||.||
RBAM_025750__    439 GAAAATTCCGGCGGGCTGCGCGGTTTGAAGTACGGCGTCACCCGGGATTA    488

BSNT_04188___    489 TGTTATTGGACTGGAGG-----TTGTGCTCGCAAATGGTGACATCATCCG    533
                     |||..|.||.||.||.|     ||| ||| .||   ||.||.||||||||
RBAM_025750__    489 TGTCCTCGGCCTTGAAGCCGTCTTG-GCT-TCA---GGCGATATCATCCG    533

BSNT_04188___    534 CACCGGCGGAAAACTCGCAAAGGATGTGGCCGGATACGACCTCACACGTC    583
                     |||.||.|||||.||..||||||||||.|||||.||.||.||.||.||.|
RBAM_025750__    534 CACAGGAGGAAAGCTGACAAAGGATGTCGCCGGTTATGATCTGACCCGGC    583

BSNT_04188___    584 TTTTTGTCGGCTCAGAAGGAACACTCGGCATTGTGACAGAGGCAATCGTC    633
                     ||||.|||||..|||||||.||.||||||.|||||||.||.||.|...|.
RBAM_025750__    584 TTTTCGTCGGAGCAGAAGGGACGCTCGGCGTTGTGACGGAAGCGACTTTA    633

BSNT_04188___    634 AAGCTCGTTCCAAAGCCTGAAACAAAAAAGACGCTGCTTGCCCTATATGA    683
                     |||||.|||||.|||||.|||||.|||||.|||||||||||.||.|||||
RBAM_025750__    634 AAGCTGGTTCCGAAGCCGGAAACGAAAAAAACGCTGCTTGCACTCTATGA    683

BSNT_04188___    684 AAACATCGATGCCGCTGCTCAAACGGTATCAGACATCATTGCCGCAAAAA    733
                     |.|.||.||.||.|||||..||.||||.||.|.||||||.||.|.|||||
RBAM_025750__    684 ACATATTGAAGCGGCTGCGGAATCGGTTTCTGCCATCATCGCTGAAAAAA    733

BSNT_04188___    734 TCATACCCGCCACGCTTGAATTTCTCGACCAGCCTACACTTTTGGTGATT    783
                     ||||.||.||.||.||.||||||||.||.|||||.|||||...|||.|||
RBAM_025750__    734 TCATTCCGGCGACACTCGAATTTCTGGATCAGCCGACACTGCAGGTCATT    783

BSNT_04188___    784 GAGGATTATGCCAAAATCGGACTGCCAACAAACGCAAAGGCGGTTCTATT    833
                     ||.|||||.|||||.|||||.||.||.||..|||||||.|||||.||..|
RBAM_025750__    784 GAAGATTACGCCAAGATCGGGCTTCCGACCGACGCAAAAGCGGTGCTGCT    833

BSNT_04188___    834 AATTGAGCAAGACGGACCGCTTGAAATC------GTGGCACGGGATATGG    877
                     .||.||.||.|||||      |||.|||      ||...|||.|||||||
RBAM_025750__    834 GATCGAACAGGACGG------TGACATCGAAACGGTCAGACGAGATATGG    877

BSNT_04188___    878 AAAAGATTGAGGCCATTTGCAAAAAAGGCGACGCCGTTTCCGTTCAGACC    927
                     ||||.||.||.||.|||||.|||||.||.|.||||||.|||||.||.||.
RBAM_025750__    878 AAAAAATCGAAGCGATTTGTAAAAACGGAGCCGCCGTATCCGTCCAAACG    927

BSNT_04188___    928 GCACAAACAGAGGAGGAGGCATTCGCCCTGACTGAAGCACGGCGCTCTGC    977
                     ||..||||.|||||.|||||||||||.||.||.||.||..|.||.||.||
RBAM_025750__    928 GCTGAAACCGAGGAAGAGGCATTCGCGCTTACAGAGGCCAGACGGTCCGC    977

BSNT_04188___    978 ACTTTCTGCCCTAGCCCGCCTCAAGCCGACGACGATTTTAGAGGATGCGA   1027
                     |.|.||.|||||.|||||.||.||.|||||.||||||.|.||.|||||||
RBAM_025750__    978 ATTATCAGCCCTTGCCCGGCTGAAACCGACAACGATTCTGGAAGATGCGA   1027

BSNT_04188___   1028 CCGTTCCTCGCTCAGAAATCGCCAATATGGTTAAAGCGATTAATGATATT   1077
                     ||||.||..|.|||.||||.||||..|||||.|||||.|||||.||.|||
RBAM_025750__   1028 CCGTGCCGAGATCACAAATTGCCAGCATGGTCAAAGCCATTAACGAGATT   1077

BSNT_04188___   1078 GCTGCTAAATATGATATTTCCATCTGCACCTTTGGCCATGCGGGAGACGG   1127
                     ||.|..|.|||||...|.|||||||||||.||.||||||||.||||||||
RBAM_025750__   1078 GCAGAAACATATGGCCTGTCCATCTGCACATTCGGCCATGCCGGAGACGG   1127

BSNT_04188___   1128 GAACCTTCACCCGACATGCACGACAGACATAAGAAATGAGGATGAAATGG   1177
                     .|||||.||.|||||.|||||.||.||.||..|||||...||.||.||||
RBAM_025750__   1128 CAACCTCCATCCGACGTGCACCACCGATATCCGAAATACAGAGGAGATGG   1177

BSNT_04188___   1178 AGCGTGTCGAACAGGCCTTTGCCGAGATTTTTGAGAAAGCGATTGAACTT   1227
                     |.|||||||||.|.||.|||||||..||||||||.|||||||||||.||.
RBAM_025750__   1178 AACGTGTCGAAAAAGCTTTTGCCGCCATTTTTGAAAAAGCGATTGAGCTG   1227

BSNT_04188___   1228 GGCGGGACGATAACCGGAGAGCACGGAGTCGGGGCA--ATGAAAGCGCCT   1275
                     ||||||||||||||.||.||.|||||.|||  ||||  .|.||||||||.
RBAM_025750__   1228 GGCGGGACGATAACGGGTGAACACGGGGTC--GGCATCGTAAAAGCGCCG   1275

BSNT_04188___   1276 TACTTGGAGATGAAGTTGAAAAAAGAAGGCATTGATGCGATGAAAGCGTT   1325
                     ||.||.||.|||||..||||||.||||||||||...||.|||||||||.|
RBAM_025750__   1276 TATTTAGAAATGAAACTGAAAACAGAAGGCATTACCGCCATGAAAGCGAT   1325

BSNT_04188___   1326 GAAAGCGGCATTTGACCCCCGGAACATAT--TAAATCCGGGCAAAGTGTT   1373
                     .|||...||..||||.|||  .||.||.|  |.||||||||.|||.|.||
RBAM_025750__   1326 CAAACAAGCGCTTGATCCC--AAAAATCTGCTGAATCCGGGAAAAATATT   1373

BSNT_04188___   1374 TGCGAA-AGATGCCAGAAAACGTGTGGTGGCG--GAAAGATGA   1413
                     .||.|| ..|| |.||.|||||.|||||||.|  |||  ||||
RBAM_025750__   1374 CGCCAATTCAT-CAAGGAAACGCGTGGTGGTGATGAA--ATGA   1413


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