Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04194 and RBAM_025780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_04194___abfA.1.9828.seq
# -bsequence dna-align/RBAM_025780___abfA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04194___abfA-RBAM_025780___abfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04194___abfA-RBAM_025780___abfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04194___abfA
# 2: RBAM_025780___abfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1520
# Identity: 1169/1520 (76.9%)
# Similarity: 1169/1520 (76.9%)
# Gaps: 37/1520 ( 2.4%)
# Score: 4428.0
#
#
#=======================================
BSNT_04194___ 1 ATGAAAAAAGCGCGAATGATTGTAGACAAAGAATATAAAATCGGTGAAGT 50
||||||||||||.|.||.|..|.|||.||||||||||..|||||||||||
RBAM_025780__ 1 ATGAAAAAAGCGGGGATTACAGCAGATAAAGAATATATCATCGGTGAAGT 50
BSNT_04194___ 51 AGATAAACGGATTTATGGCTCGTTTATCGAACATATGGGTCGTGCGGTAT 100
.||.||||||||.||.||.||.|||||.|||||||||||.||.|||||.|
RBAM_025780__ 51 GGACAAACGGATGTACGGATCATTTATAGAACATATGGGCCGGGCGGTGT 100
BSNT_04194___ 101 ATGAAGGCATATACGAGCCTGATCACCCTGAAGCGGATGAAGATGGATTT 150
||||||||||.||.|||||.|..|||||..||||.||..|.||.||.||.
RBAM_025780__ 101 ATGAAGGCATTTATGAGCCCGGACACCCGAAAGCCGACAAGGACGGCTTC 150
BSNT_04194___ 151 AGAAAAGATGTCCAGTCGCTGATCAAAGAATTACAGGTTCCCATCATCCG 200
||||.|||.||.|||..|.|.|||||.|||||.||.||.||..|||||||
RBAM_025780__ 151 AGAACAGACGTGCAGGAGTTAATCAAGGAATTGCAAGTGCCGTTCATCCG 200
BSNT_04194___ 201 CTATCCGGGCGGAAACTTTTTATCCGGATACAACTGGGAGGACGGTGTCG 250
|||||||||.||.||.|||.|.||.||.|||||.|||||.|||||.||||
RBAM_025780__ 201 CTATCCGGGAGGGAATTTTCTCTCGGGCTACAATTGGGAAGACGGCGTCG 250
BSNT_04194___ 251 GACCAGTCGAA-AACCGCCCGAGACGGCTTGACTTAGCATGGCAAACGAC 299
|.||.|| ||| .||||||||.|..|||||||.||.||||||||.|||||
RBAM_025780__ 251 GGCCGGT-GAAGGACCGCCCGCGGAGGCTTGATTTGGCATGGCAGACGAC 299
BSNT_04194___ 300 AGAAACCAATGAAGTGGGAACAAATGAATTTTTATCTTGGGCCAAAAAGG 349
||||||.||.|||||.||.||.||||||||||||.|.|||||.|||||.|
RBAM_025780__ 300 AGAAACGAACGAAGTAGGGACGAATGAATTTTTAACGTGGGCGAAAAAAG 349
BSNT_04194___ 350 TGAACACTGAGGTCAATATGGCCGTCAACCTCGGCACAAGAGGCATAGAT 399
|||||.|.||.||.||||||||.|||||.|||||.||.|||||.||.|||
RBAM_025780__ 350 TGAACGCCGAAGTGAATATGGCGGTCAATCTCGGGACGAGAGGGATCGAT 399
BSNT_04194___ 400 GCCGCCCGTAATCTCGTTGAATACTGCAACCACCCGAAAGGCTCTTACTG 449
||||||||.||.|||||.||||||||||||||.||..||||.||.|||||
RBAM_025780__ 400 GCCGCCCGGAACCTCGTCGAATACTGCAACCATCCTGAAGGGTCGTACTG 449
BSNT_04194___ 450 GAGTGATTTAAGAAGATCGCATGGCTATGAACAGCCGTACGGCATCAAAA 499
|||.||.|||.|||.||||||.||.||||||.|.||.|||||||||||||
RBAM_025780__ 450 GAGCGACTTACGAAAATCGCACGGATATGAAAAACCTTACGGCATCAAAA 499
BSNT_04194___ 500 CATGGTGCTTAGGAAACGAAATGGATGGACCGTGGCAGATCGGCCACAAA 549
||||||||||||||||.||.|||||.||.||.|||||||||||.||.|||
RBAM_025780__ 500 CATGGTGCTTAGGAAATGAGATGGACGGCCCTTGGCAGATCGGTCATAAA 549
BSNT_04194___ 550 ACAGCTGATGAATACGGACGGCTTGCTGCAGAGACAGCAAAGGTCATGAA 599
||.||..||||||||||||||||.||.||.||.||.||||||||.|||||
RBAM_025780__ 550 ACGGCGCATGAATACGGACGGCTCGCAGCTGAAACGGCAAAGGTGATGAA 599
BSNT_04194___ 600 GTGGGTTGACCCATCAATTGAACTCGTTGCCTGCGGCAGCTCAAACAGCG 649
.|||...|||||..|.||.|||.|.||.||.|||||.|||||||||||||
RBAM_025780__ 600 ATGGACGGACCCGACGATCGAATTGGTGGCTTGCGGAAGCTCAAACAGCG 649
BSNT_04194___ 650 GTATGCCGACCTTTATCGATTGGGAAGCGAAGGTGCTGGAGCATACGTAT 699
|.||||||.||||.||.||.|||||.||..|||||||.|||||||||||.
RBAM_025780__ 650 GCATGCCGTCCTTCATTGAGTGGGAGGCCGAGGTGCTTGAGCATACGTAC 699
BSNT_04194___ 700 GAGCATGTCGACTATATCTCTCTTCACACTTACTACGGAAACCGGGATAA 749
||||||||.||.||.|||||.||.||.||.||.|||||.||||..||.||
RBAM_025780__ 700 GAGCATGTGGATTACATCTCACTGCATACGTATTACGGCAACCATGAAAA 749
BSNT_04194___ 750 CAATCTGCCAAACTACTTGGCCCGTTCCATGGATTTGGATCATTTTATCA 799
..||||....|||||.|||||....||.||||||||.||.||||||||.|
RBAM_025780__ 750 TGATCTTGAGAACTATTTGGCGAAGTCGATGGATTTAGACCATTTTATTA 799
BSNT_04194___ 800 AATCAGTCGCTGCGACCTGTGACTATGTAAAAGCAAAAACATGCAGCAAG 849
||||.|||.|.||....|||||.|||.|.|||||.||||.|.|||||||.
RBAM_025780__ 800 AATCCGTCACAGCCGTATGTGATTATATGAAAGCGAAAAAACGCAGCAAA 849
BSNT_04194___ 850 AAAACAATCAATCTTTCTCTGGATGAATGGAACGTCTGGTACCACTCAAA 899
|||||.||..|.||||||.|.|||||||||||.||.|||||.||||||||
RBAM_025780__ 850 AAAACGATTCACCTTTCTTTAGATGAATGGAATGTGTGGTATCACTCAAA 899
BSNT_04194___ 900 TGAGGCTGATAAAAAAGTCGAGCCGTGGATCACTGCGCGTCCGATTTTAG 949
|||.||.|||||||||||.|||||.|||||.||.||.||.||||||.|.|
RBAM_025780__ 900 TGAAGCGGATAAAAAAGTGGAGCCATGGATTACGGCCCGGCCGATTCTTG 949
BSNT_04194___ 950 AGGATATTTACAATTTTGAAGATGCCTTATTAGTCGGCTCTCTGCTCATT 999
|.||.||.|||||||||||||||||..|.||..||||.||.|||||.|||
RBAM_025780__ 950 AAGACATCTACAATTTTGAAGATGCGCTGTTGATCGGTTCACTGCTGATT 999
BSNT_04194___ 1000 ACGATGCTGCAGCACGCAGACCGTGTGAAAATTGCGTGTCTTGCACAGCT 1049
||.|||||||||||.||.|||.|..|.||.||.||.|||||.||.|||||
RBAM_025780__ 1000 ACCATGCTGCAGCATGCGGACAGACTAAAGATCGCCTGTCTCGCCCAGCT 1049
BSNT_04194___ 1050 TGTCAATGTCATCGCGCCAATCATGACGGAAAAAGGCGGAGAAGCATGGA 1099
||||||.||.||.|||||.||||||||.|||||.||||||||||||||||
RBAM_025780__ 1050 TGTCAACGTAATTGCGCCTATCATGACCGAAAAGGGCGGAGAAGCATGGA 1099
BSNT_04194___ 1100 GACAGCCGATTTTCTATCCATACATGCATGCTTCTGTTTACGGAAGGGGC 1149
|.||||||||.||.||.||.||||||||.||.|||||.|||||.||.||
RBAM_025780__ 1100 GGCAGCCGATCTTTTACCCTTACATGCACGCCTCTGTCTACGGGAGAGG- 1148
BSNT_04194___ 1150 GA-GTCACTGAAACCGCTTATTTCTTCTCCTAAGTACGATTGTTCTGATT 1198
|| .|||.||||.|.|||..|..|.||.||.||.|||||.|...|.||||
RBAM_025780__ 1149 GACTTCAATGAAGCTGCTGGTCACCTCCCCGAAATACGACTCAGCGGATT 1198
BSNT_04194___ 1199 TCACTGATGTGCCATATGTTGATGCTGCTGTTGTGTACTCTGAAGAGGAA 1248
|.||.||||||||.|||||||||||.||.|..||.|||..|||||||||.
RBAM_025780__ 1199 TTACGGATGTGCCGTATGTTGATGCCGCGGCCGTTTACCATGAAGAGGAT 1248
BSNT_04194___ 1249 GAAACACTCACTATTTTTGCGGTAAAC-AAGGCTGAGGATCAGATGGAGA 1297
|||.||||.||.||||||||.||.||| ||.|| .||||.|.||||||.|
RBAM_025780__ 1249 GAAGCACTTACCATTTTTGCCGTCAACAAAAGC-AAGGAACTGATGGAAA 1297
BSNT_04194___ 1298 CGGAGATTTCGCTCAGAGGCTTTGAATCCTACCAAATCGCA-----GAGC 1342
|||||||...|||.|||||.||||||...||| |||| ||||
RBAM_025780__ 1298 CGGAGATCAAGCTGAGAGGGTTTGAAGATTAC-----CGCATTATTGAGC 1342
BSNT_04194___ 1343 ACATCGTACTTGAGCATCAGGATATCAAAGCGACAAACCAGCATAACAGA 1392
|.|||||.||.||||||||||||||.||||||||.||.||..|.||||||
RBAM_025780__ 1343 ATATCGTGCTGGAGCATCAGGATATGAAAGCGACCAATCAAAAAAACAGA 1392
BSNT_04194___ 1393 AAAAATGTCGTTCCGCATTCCAACGGATCATCGTCTGTCAGCGAAAATGG 1442
|||.|.|||...||.||.||.||||| |.||||| ||.|| |||| |
RBAM_025780__ 1393 AAAGAAGTCACGCCTCACTCAAACGG---AACGTCT-TCGGC--AAAT-G 1435
BSNT_04194___ 1443 CT-------TAACTGGTCATTTCACGCCGCTTTCCTGGAATGTGATCCGC 1485
|| ||||.|.||||||.||.|||||.|||||||||||.|||||.
RBAM_025780__ 1436 CTGAAGGGATAACGGCTCATTTTACTCCGCTGTCCTGGAATGTCATCCGT 1485
BSNT_04194___ 1486 CTGAAAAAACAGTC--ATAA 1503
.| |.|||.| ||||
RBAM_025780__ 1486 TT-----ATCAGGCAAATAA 1500
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